![[Jenkins]](/jenkins/static/8dc2a4ee/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 246 originally caused by: Started by upstream project "Trigger" build number 270 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins9837219665558746219.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38671_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:20:07,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:20:07,423 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:20:07,423 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:07,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:07,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:20:07,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:20:07,425 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:20:07,425 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:07,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:07,426 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:20:07,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:20:07,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:20:07,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:20:07,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:20:07,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:20:07,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:20:07,629 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:20:07,629 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:20:07,629 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:20:07,630 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:20:07,630 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:20:07,631 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:20:07,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-05 00:20:07,640] [main] java.version = 11.0.16 [testng] 00:20:07,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:20:07,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:20:07,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-05_00-20-07.log] [testng] 00:20:07,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-05 00:20:07,690] [main] testng.directory = /data [testng] [2024-11-05 00:20:07,690] [main] testng.configDirectory = /config [testng] [2024-11-05 00:20:07,700] [main] testng.multiplier = 1.0 [testng] [2024-11-05 00:20:07,701] [main] testng.in-memory = false [testng] [2024-11-05 00:20:07,702] [main] testng.allow-missing = false [testng] [2024-11-05 00:20:07,702] [main] user.language = en [testng] [2024-11-05 00:20:07,702] [main] user.country = ${user.country} [testng] [2024-11-05 00:20:07,702] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-05 00:20:29,045] [main] ---------------------------------------- [testng] [2024-11-05 00:20:29,045] [main] Total files: 315 [testng] [2024-11-05 00:20:29,045] [main] Scan time: 21.343 s (67 ms/file) [testng] [2024-11-05 00:20:29,045] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-05 00:30:54,599] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] 00:30:54,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:30:54,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:54,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-05_00-30-54.log] [testng] 00:30:54,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@696c7b66 - End of configuration. [testng] [2024-11-05 00:30:55,230] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] 00:30:55,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:30:55,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:55,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-05_00-30-55.log] [testng] 00:30:55,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32ab7ef - End of configuration. [testng] [2024-11-05 00:30:55,410] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] 00:30:55,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:30:55,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:55,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-05_00-30-55.log] [testng] 00:30:55,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d8d1800 - End of configuration. [testng] [2024-11-05 00:30:55,551] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] 00:30:55,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:30:55,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:55,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-05_00-30-55.log] [testng] 00:30:55,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50f93395 - End of configuration. [testng] [2024-11-05 00:30:55,743] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] 00:30:55,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:30:55,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:55,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-05_00-30-55.log] [testng] 00:30:55,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@396d0350 - End of configuration. [testng] [2024-11-05 00:30:55,824] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif: [testng] 00:30:55,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:30:55,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:55,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-05_00-30-55.log] [testng] 00:30:55,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b568cf0 - End of configuration. [testng] [2024-11-05 00:30:56,023] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] 00:30:56,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:30:56,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:56,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-05_00-30-56.log] [testng] 00:30:56,025 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5673a145 - End of configuration. [testng] [2024-11-05 00:30:56,227] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] 00:30:56,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:30:56,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:56,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-05_00-30-56.log] [testng] 00:30:56,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39c1b3c6 - End of configuration. [testng] [2024-11-05 00:30:56,453] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] 00:30:56,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:30:56,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:56,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-05_00-30-56.log] [testng] 00:30:56,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@464bbea4 - End of configuration. [testng] [2024-11-05 00:30:56,600] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] 00:30:56,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:30:56,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:56,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-05_00-30-56.log] [testng] 00:30:56,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41e7ead9 - End of configuration. [testng] [2024-11-05 00:30:56,735] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] 00:30:56,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:30:56,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:56,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-05_00-30-56.log] [testng] 00:30:56,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bedd52c - End of configuration. [testng] [2024-11-05 00:30:57,062] [pool-1-thread-2] Initializing /data/qa-17270/image1.oir: [testng] 00:30:57,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:30:57,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:57,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-05_00-30-57.log] [testng] 00:30:57,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fcc9ef2 - End of configuration. [testng] [2024-11-05 00:31:00,880] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-11-05 00:31:01,757] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-11-05 00:31:02,084] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-11-05 00:31:05,538] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-11-05 00:31:06,268] [pool-1-thread-6] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-11-05 00:31:06,666] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-11-05 00:31:07,075] [pool-1-thread-8] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-11-05 00:31:07,088] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-11-05 00:31:08,091] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-11-05 00:31:09,868] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-11-05 00:31:12,872] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-11-05 00:31:15,774] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-11-05 00:31:17,012] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-11-05 00:31:17,736] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-05 00:31:18,331] [pool-1-thread-3] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-11-05 00:31:18,980] [pool-1-thread-4] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-11-05 00:31:20,936] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-11-05 00:31:22,339] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-11-05 00:31:24,012] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-11-05 00:31:25,334] [pool-1-thread-4] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-11-05 00:31:26,309] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-11-05 00:31:26,792] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-11-05 00:31:27,534] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-11-05 00:31:29,972] [pool-1-thread-7] Initializing /data/olympus/XYZt.oir: [testng] [2024-11-05 00:31:31,987] [pool-1-thread-4] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-11-05 00:31:33,028] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-11-05 00:31:33,467] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-11-05 00:31:33,756] [pool-1-thread-11] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-11-05 00:31:36,077] [pool-1-thread-6] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-11-05 00:31:37,553] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-11-05 00:31:37,923] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-11-05 00:31:40,714] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-11-05 00:31:41,423] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-11-05 00:31:41,772] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-11-05 00:31:44,297] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-11-05 00:31:44,712] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-11-05 00:31:47,155] [pool-1-thread-6] Initializing /data/olympus/XYZt.vsi: [testng] [2024-11-05 00:31:47,355] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-11-05 00:31:47,711] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-11-05 00:31:48,509] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-11-05 00:31:49,382] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-11-05 00:31:50,208] [pool-1-thread-5] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-11-05 00:32:11,888] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-11-05 00:32:12,911] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-11-05 00:32:13,795] [pool-1-thread-6] Initializing /data/qa-17917/f10010.oir: [testng] [2024-11-05 00:32:42,850] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-11-05 00:32:47,625] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-11-05 00:32:48,745] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-11-05 00:32:49,404] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-11-05 00:32:50,048] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-11-05 00:32:53,665] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-11-05 00:32:55,608] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-11-05 00:32:56,365] [pool-1-thread-10] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-11-05 00:32:57,658] [pool-1-thread-4] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-11-05 00:32:58,265] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-11-05 00:32:59,167] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-11-05 00:33:00,579] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-05 00:33:05,939] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-11-05 00:33:09,261] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-11-05 00:33:10,709] [pool-1-thread-4] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-11-05 00:33:12,301] [pool-1-thread-9] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-11-05 00:33:13,728] [pool-1-thread-11] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-11-05 00:33:18,753] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-11-05 00:33:21,197] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-11-05 00:33:22,235] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-11-05 00:33:23,862] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-11-05 00:33:25,334] [pool-1-thread-11] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-11-05 00:33:28,403] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-11-05 00:33:30,522] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-11-05 00:33:33,256] [pool-1-thread-3] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-11-05 00:33:33,953] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-11-05 00:33:35,708] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-11-05 00:33:37,171] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-11-05 00:33:38,330] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-11-05 00:33:39,018] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-11-05 00:33:40,608] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-11-05 00:33:42,387] [pool-1-thread-4] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-11-05 00:33:43,496] [pool-1-thread-9] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-11-05 00:33:44,108] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-11-05 00:33:45,752] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-11-05 00:33:47,054] [pool-1-thread-8] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-11-05 00:33:50,017] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-05 00:33:51,793] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-11-05 00:33:52,791] [pool-1-thread-9] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-11-05 00:33:53,748] [pool-1-thread-7] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-11-05 00:33:57,034] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-11-05 00:33:59,867] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-11-05 00:34:00,770] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-11-05 00:34:04,814] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-11-05 00:34:05,643] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-11-05 00:34:07,855] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-11-05 00:34:09,802] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-11-05 00:34:10,812] [pool-1-thread-3] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-11-05 00:35:04,297] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-11-05 00:35:06,494] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-11-05 00:35:08,029] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-11-05 00:35:09,745] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-11-05 00:35:10,406] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-11-05 00:35:15,564] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-11-05 00:35:16,031] [pool-1-thread-4] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-11-05 00:35:16,868] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-11-05 00:35:17,702] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-11-05 00:35:21,099] [pool-1-thread-8] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-11-05 00:35:21,783] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-11-05 00:35:25,948] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-11-05 00:35:26,419] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-11-05 00:35:27,438] [pool-1-thread-4] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-11-05 00:35:30,703] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-11-05 00:35:31,570] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-11-05 00:35:32,266] [pool-1-thread-8] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-11-05 00:35:32,696] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-11-05 00:35:33,264] [pool-1-thread-4] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-11-05 00:35:36,869] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-11-05 00:35:37,465] [pool-1-thread-8] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-11-05 00:35:38,635] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-11-05 00:35:39,298] [pool-1-thread-11] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-11-05 00:35:42,381] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-11-05 00:35:43,112] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-11-05 00:35:43,522] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-11-05 00:35:43,895] [pool-1-thread-11] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-11-05 00:35:44,439] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-11-05 00:35:49,103] [pool-1-thread-10] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-11-05 00:35:50,039] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-11-05 00:35:50,923] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-11-05 00:35:51,612] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-11-05 00:35:52,155] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-11-05 00:35:56,656] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-11-05 00:35:57,098] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-11-05 00:35:57,463] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-11-05 00:35:57,922] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-11-05 00:36:02,235] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-11-05 00:36:02,799] [pool-1-thread-8] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-11-05 00:36:03,637] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-11-05 00:36:04,220] [pool-1-thread-10] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-11-05 00:36:05,341] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-11-05 00:36:08,337] [pool-1-thread-8] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-11-05 00:36:09,498] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-11-05 00:36:12,744] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-11-05 00:36:14,930] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-11-05 00:36:15,847] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-11-05 00:36:17,287] [pool-1-thread-7] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-11-05 00:36:20,060] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-11-05 00:36:22,924] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-11-05 00:36:28,707] [pool-1-thread-8] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-11-05 00:36:29,194] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-11-05 00:36:29,529] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-11-05 00:36:31,491] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-11-05 00:36:34,548] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-11-05 00:36:38,698] [pool-1-thread-2] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-11-05 00:36:39,439] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-11-05 00:36:40,629] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-11-05 00:36:41,566] [pool-1-thread-7] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-11-05 00:36:42,613] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-11-05 00:36:46,893] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-11-05 00:36:47,902] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-11-05 00:36:50,713] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-11-05 00:36:51,756] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-11-05 00:37:00,442] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-11-05 00:37:01,853] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-11-05 00:37:07,165] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-11-05 00:37:07,845] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-11-05 00:37:09,938] [pool-1-thread-5] Initializing /data/qa-17270/stack1.oir: [testng] [2024-11-05 00:37:13,535] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-11-05 00:37:15,486] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-11-05 00:37:16,177] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-11-05 00:37:19,966] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-11-05 00:37:22,259] [pool-1-thread-6] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-11-05 00:37:27,766] [pool-1-thread-11] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-11-05 00:37:29,834] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-11-05 00:37:32,345] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-11-05 00:37:33,851] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-11-05 00:37:35,666] [pool-1-thread-11] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-11-05 00:37:36,547] [pool-1-thread-2] Initializing /data/qa-17335/1.oir: [testng] [2024-11-05 00:37:37,109] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-11-05 00:37:40,191] [pool-1-thread-7] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-11-05 00:37:40,875] [pool-1-thread-8] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-11-05 00:37:42,348] [pool-1-thread-2] Initializing /data/qa-17919/f10187.oir: [testng] [2024-11-05 00:38:03,028] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-11-05 00:38:04,106] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-11-05 00:38:04,552] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 53 minutes 4 seconds Finished: SUCCESS