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Started by upstream project "BIOFORMATS-test-repo" build number 246 originally caused by: Started by upstream project "Trigger" build number 270 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7244856661175246441.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38702_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:41:07,243 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:41:07,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:41:07,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:41:07,246 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:41:07,246 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:41:07,247 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:41:07,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:41:07,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:41:07,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:41:07,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:41:07,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:41:07,249 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:41:07,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:41:07,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:41:07,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:41:07,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:41:07,467 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:41:07,467 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:41:07,467 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:41:07,468 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:41:07,468 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:41:07,468 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:41:07,469 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 222 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-05 00:41:07,478] [main] java.version = 11.0.16 [testng] 00:41:07,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:41:07,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:07,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-05_00-41-07.log] [testng] 00:41:07,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-05 00:41:07,529] [main] testng.directory = /data [testng] [2024-11-05 00:41:07,530] [main] testng.configDirectory = /config [testng] [2024-11-05 00:41:07,540] [main] testng.multiplier = 1.0 [testng] [2024-11-05 00:41:07,542] [main] testng.in-memory = false [testng] [2024-11-05 00:41:07,542] [main] testng.allow-missing = false [testng] [2024-11-05 00:41:07,542] [main] user.language = en [testng] [2024-11-05 00:41:07,542] [main] user.country = ${user.country} [testng] [2024-11-05 00:41:07,542] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-05 00:41:21,102] [main] ---------------------------------------- [testng] [2024-11-05 00:41:21,102] [main] Total files: 259 [testng] [2024-11-05 00:41:21,102] [main] Scan time: 13.56 s (52 ms/file) [testng] [2024-11-05 00:41:21,102] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-05 00:47:43,915] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] 00:47:43,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:47:43,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:43,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-05_00-47-43.log] [testng] 00:47:43,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46c7e8ce - End of configuration. [testng] [2024-11-05 00:47:44,141] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib: [testng] 00:47:44,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:47:44,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:44,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-05_00-47-44.log] [testng] 00:47:44,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f304872 - End of configuration. [testng] [2024-11-05 00:47:44,408] [pool-1-thread-11] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 00:47:44,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:47:44,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:44,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-05_00-47-44.log] [testng] 00:47:44,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60658ab2 - End of configuration. [testng] [2024-11-05 00:47:44,862] [pool-1-thread-10] Initializing /data/marc/V0606J.oib: [testng] 00:47:44,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:47:44,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:44,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-05_00-47-44.log] [testng] 00:47:44,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76462e98 - End of configuration. [testng] [2024-11-05 00:47:46,425] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] 00:47:46,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:47:46,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:46,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-05_00-47-46.log] [testng] 00:47:46,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2913867e - End of configuration. [testng] [2024-11-05 00:47:46,450] [pool-1-thread-8] Initializing /data/karl/Image0009.oib: [testng] 00:47:46,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:47:46,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:46,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-05_00-47-46.log] [testng] 00:47:46,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1da61f9d - End of configuration. [testng] [2024-11-05 00:47:46,591] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] 00:47:46,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:47:46,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:46,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-05_00-47-46.log] [testng] 00:47:46,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c191a0d - End of configuration. [testng] [2024-11-05 00:47:47,000] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] 00:47:47,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:47:47,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:47,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-05_00-47-47.log] [testng] 00:47:47,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@234963cb - End of configuration. [testng] [2024-11-05 00:47:47,374] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF: [testng] 00:47:47,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:47:47,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:47,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-05_00-47-47.log] [testng] 00:47:47,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57d039cb - End of configuration. [testng] [2024-11-05 00:47:51,256] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] 00:47:51,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:47:51,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:51,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-05_00-47-51.log] [testng] 00:47:51,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11b5136d - End of configuration. [testng] [2024-11-05 00:47:51,415] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] 00:47:51,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:47:51,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:51,415 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-05_00-47-51.log] [testng] 00:47:51,416 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b3a83fe - End of configuration. [testng] [2024-11-05 00:47:51,610] [pool-1-thread-2] Initializing /data/brian/Lambda10nm.oib: [testng] 00:47:51,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:47:51,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:51,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-05_00-47-51.log] [testng] 00:47:51,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ebbf4a6 - End of configuration. [testng] [2024-11-05 00:47:54,164] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-05 00:47:54,357] [pool-1-thread-8] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-05 00:47:57,172] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] [2024-11-05 00:47:58,014] [pool-1-thread-3] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-05 00:47:58,322] [pool-1-thread-12] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-05 00:47:58,483] [pool-1-thread-1] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-05 00:48:00,459] [pool-1-thread-12] Initializing /data/glen/simulstack.oib: [testng] [2024-11-05 00:48:00,956] [pool-1-thread-9] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-05 00:48:01,515] [pool-1-thread-11] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-05 00:48:03,240] [pool-1-thread-7] Initializing /data/david/Image0016.oif: [testng] [2024-11-05 00:48:03,553] [pool-1-thread-6] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-05 00:48:04,197] [pool-1-thread-3] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-05 00:48:06,903] [pool-1-thread-4] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-05 00:48:07,483] [pool-1-thread-1] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-05 00:48:08,852] [pool-1-thread-12] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-05 00:48:09,107] [pool-1-thread-6] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-05 00:48:10,016] [pool-1-thread-1] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-05 00:48:11,076] [pool-1-thread-9] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-05 00:48:12,171] [pool-1-thread-6] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-05 00:48:12,227] [pool-1-thread-12] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-05 00:48:12,714] [pool-1-thread-4] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-05 00:48:17,718] [pool-1-thread-10] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-05 00:48:26,124] [pool-1-thread-6] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-05 00:48:27,342] [pool-1-thread-1] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-05 00:48:28,472] [pool-1-thread-3] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-05 00:48:29,400] [pool-1-thread-9] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-05 00:48:31,961] [pool-1-thread-1] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-05 00:48:35,692] [pool-1-thread-1] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-05 00:49:07,911] [pool-1-thread-3] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-05 00:49:16,589] [pool-1-thread-7] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-05 00:50:08,174] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-05 00:50:09,236] [pool-1-thread-12] Initializing /data/allan/62909#1.oib: [testng] [2024-11-05 00:50:10,259] [pool-1-thread-9] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-05 00:50:13,869] [pool-1-thread-12] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-05 00:50:26,351] [pool-1-thread-6] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-05 00:50:30,630] [pool-1-thread-6] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-05 00:52:03,871] [pool-1-thread-7] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-05 00:52:07,279] [pool-1-thread-7] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-05 00:53:03,325] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-05 00:53:12,781] [pool-1-thread-7] Initializing /data/jae/Image0001.oib: [testng] [2024-11-05 00:53:21,459] [pool-1-thread-7] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-05 00:54:00,131] [pool-1-thread-7] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-05 00:54:08,394] [pool-1-thread-7] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-05 00:55:00,294] [pool-1-thread-7] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-05 00:55:05,897] [pool-1-thread-7] Initializing /data/michael/CELL3.oib: [testng] [2024-11-05 00:55:10,924] [pool-1-thread-7] Initializing /data/simon/never_worked.oib: [testng] [2024-11-05 00:55:16,440] [pool-1-thread-7] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-05 00:55:51,593] [pool-1-thread-7] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-05 00:55:57,078] [pool-1-thread-7] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-05 00:56:02,766] [pool-1-thread-7] Initializing /data/johannes/step1.bmp: [testng] [2024-11-05 00:56:05,093] [pool-1-thread-7] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-05 00:56:11,074] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-05 00:56:16,602] [pool-1-thread-7] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-05 00:56:36,717] [pool-1-thread-7] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-05 00:56:42,843] [pool-1-thread-7] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-05 00:58:31,477] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] [2024-11-05 01:01:40,747] [pool-1-thread-8] Initializing /data/brian/FLIP.oib: [testng] [2024-11-05 01:01:48,663] [pool-1-thread-8] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-05 01:01:57,771] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-05 01:02:02,805] [pool-1-thread-8] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-05 01:02:07,751] [pool-1-thread-8] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-05 01:02:19,778] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-05 01:02:26,072] [pool-1-thread-9] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-05 01:02:40,681] [pool-1-thread-8] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-05 01:02:45,125] [pool-1-thread-8] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-05 01:02:49,884] [pool-1-thread-8] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-05 01:03:56,324] [pool-1-thread-7] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-05 01:03:59,413] [pool-1-thread-7] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-05 01:04:07,946] [pool-1-thread-3] Initializing /data/christian/20min.oif: [testng] [2024-11-05 01:04:26,585] [pool-1-thread-3] Initializing /data/marc/V0606L.oib: [testng] [2024-11-05 01:04:41,582] [pool-1-thread-7] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-05 01:04:53,797] [pool-1-thread-3] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-05 01:05:38,191] [pool-1-thread-3] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-05 01:05:41,397] [pool-1-thread-3] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-05 01:05:47,534] [pool-1-thread-3] Initializing /data/aryeh/1h.oib: [testng] [2024-11-05 01:05:59,097] [pool-1-thread-3] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-05 01:06:07,819] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-05 01:06:34,096] [pool-1-thread-11] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-05 01:06:36,326] [pool-1-thread-11] Initializing /data/david/Image0016.oib: [testng] [2024-11-05 01:06:46,043] [pool-1-thread-11] Initializing /data/monica/Image0056.oif: [testng] [2024-11-05 01:07:01,022] [pool-1-thread-12] Initializing /data/glen/Image0002.oif: [testng] [2024-11-05 01:07:49,073] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-05 01:08:01,290] [pool-1-thread-11] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-05 01:08:08,746] [pool-1-thread-11] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-05 01:08:44,514] [pool-1-thread-11] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-05 01:08:53,141] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-05 01:09:02,765] [pool-1-thread-11] Initializing /data/johannes/step3.bmp: [testng] [2024-11-05 01:09:05,494] [pool-1-thread-11] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-05 01:11:52,264] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-05 01:11:57,958] [pool-1-thread-2] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-05 01:12:04,969] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-05 01:12:13,306] [pool-1-thread-2] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-05 01:12:14,746] [pool-1-thread-4] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-05 01:12:20,382] [pool-1-thread-2] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-05 01:12:31,980] [pool-1-thread-4] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-05 01:12:53,943] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-05 01:13:01,586] [pool-1-thread-11] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-05 01:14:27,035] [pool-1-thread-7] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-05 01:14:33,282] [pool-1-thread-7] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-05 01:14:38,082] [pool-1-thread-7] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-05 01:14:43,340] [pool-1-thread-7] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-05 01:14:47,997] [pool-1-thread-7] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-05 01:18:11,043] [pool-1-thread-3] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-05 01:19:41,700] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-05 01:19:47,224] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-05 01:19:51,861] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-05 01:19:56,697] [pool-1-thread-5] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-05 01:20:06,942] [pool-1-thread-5] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-05 01:20:12,420] [pool-1-thread-5] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-05 01:20:19,850] [pool-1-thread-5] Initializing /data/sten/01.oib: [testng] [2024-11-05 01:20:24,979] [pool-1-thread-5] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-05 01:20:32,118] [pool-1-thread-5] Initializing /data/johannes/step2.bmp: [testng] [2024-11-05 01:20:34,760] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-05 01:23:20,473] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-05 01:23:28,497] [pool-1-thread-10] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-05 01:23:35,767] [pool-1-thread-10] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-11-05 01:24:14,104] [pool-1-thread-10] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-05 01:24:18,954] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-05 01:24:24,371] [pool-1-thread-9] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-05 01:24:25,394] [pool-1-thread-10] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-05 01:24:28,277] [pool-1-thread-9] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-05 01:24:29,871] [pool-1-thread-10] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-05 01:24:33,433] [pool-1-thread-9] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-05 01:24:49,411] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-05 01:24:55,734] [pool-1-thread-12] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-05 01:25:15,928] [pool-1-thread-10] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-05 01:25:22,336] [pool-1-thread-10] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-05 01:25:31,011] [pool-1-thread-10] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-05 01:25:37,562] [pool-1-thread-9] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-05 01:25:43,109] [pool-1-thread-9] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-05 01:25:44,633] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-05 01:25:51,638] [pool-1-thread-9] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 01:57:07,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:57:07,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:07,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-05_01-57-07.log] [testng] 01:57:07,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bd70ec5 - End of configuration. [testng] 02:35:18,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:35:18,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:35:18,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-05_02-35-18.log] [testng] 02:35:18,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f116270 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 114 minutes 14 seconds Finished: SUCCESS