![[Jenkins]](/jenkins/static/695419c3/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 247 originally caused by: Started by upstream project "Trigger" build number 271 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins8893189297605906159.sh + '[' targa = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38862_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:40:33,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:40:33,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:40:33,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:40:33,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:40:33,906 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:40:33,907 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:40:33,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:40:33,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:40:33,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:40:33,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:40:33,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:40:33,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:40:34,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:40:34,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:40:34,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:40:34,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:40:34,151 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:40:34,151 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:40:34,151 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:40:34,152 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:40:34,152 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:40:34,153 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:40:34,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 245 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-06 00:40:34,162] [main] java.version = 17.0.2 [testng] 00:40:34,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:40:34,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:34,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-06_00-40-34.log] [testng] 00:40:34,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-06 00:40:34,209] [main] testng.directory = /data [testng] [2024-11-06 00:40:34,209] [main] testng.configDirectory = /config [testng] [2024-11-06 00:40:34,217] [main] testng.multiplier = 1.0 [testng] [2024-11-06 00:40:34,218] [main] testng.in-memory = false [testng] [2024-11-06 00:40:34,218] [main] testng.allow-missing = false [testng] [2024-11-06 00:40:34,218] [main] user.language = en [testng] [2024-11-06 00:40:34,218] [main] user.country = ${user.country} [testng] [2024-11-06 00:40:34,218] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-06 00:40:34,957] [main] ---------------------------------------- [testng] [2024-11-06 00:40:34,957] [main] Total files: 21 [testng] [2024-11-06 00:40:34,957] [main] Scan time: 0.739 s (35 ms/file) [testng] [2024-11-06 00:40:34,957] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-06 00:40:41,214] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA: [testng] 00:40:41,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:40:41,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:41,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-06_00-40-41.log] [testng] 00:40:41,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f7923b8 - End of configuration. [testng] [2024-11-06 00:40:41,507] [pool-1-thread-12] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:40:41,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:40:41,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:41,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-06_00-40-41.log] [testng] 00:40:41,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@573e7e7b - End of configuration. [testng] [2024-11-06 00:40:41,800] [pool-1-thread-11] Initializing /data/samples/CTC24.TGA: [testng] 00:40:41,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:40:41,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:41,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-06_00-40-41.log] [testng] 00:40:41,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2081a2fc - End of configuration. [testng] [2024-11-06 00:40:42,027] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 00:40:42,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:40:42,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:42,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-06_00-40-42.log] [testng] 00:40:42,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72d88b07 - End of configuration. [testng] [2024-11-06 00:40:42,284] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA: [testng] 00:40:42,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:40:42,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:42,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-06_00-40-42.log] [testng] 00:40:42,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ef384dd - End of configuration. [testng] [2024-11-06 00:40:42,506] [pool-1-thread-8] Initializing /data/samples/XING_B32.TGA: [testng] 00:40:42,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:40:42,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:42,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-06_00-40-42.log] [testng] 00:40:42,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7655bcc9 - End of configuration. [testng] [2024-11-06 00:40:42,747] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA: [testng] 00:40:42,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:40:42,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:42,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-06_00-40-42.log] [testng] 00:40:42,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5420d44b - End of configuration. [testng] [2024-11-06 00:40:42,946] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA: [testng] 00:40:42,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:40:42,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:42,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-06_00-40-42.log] [testng] 00:40:42,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289eed7 - End of configuration. [testng] [2024-11-06 00:40:43,106] [pool-1-thread-5] Initializing /data/samples/UBW8.TGA: [testng] 00:40:43,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:40:43,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:43,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-06_00-40-43.log] [testng] 00:40:43,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a38dfd9 - End of configuration. [testng] [2024-11-06 00:40:43,295] [pool-1-thread-4] Initializing /data/samples/XING_T24.TGA: [testng] 00:40:43,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:40:43,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:43,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-06_00-40-43.log] [testng] 00:40:43,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c316fe - End of configuration. [testng] [2024-11-06 00:40:43,484] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:40:43,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:40:43,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:43,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-06_00-40-43.log] [testng] 00:40:43,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69683f83 - End of configuration. [testng] [2024-11-06 00:40:43,667] [pool-1-thread-2] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:40:43,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:40:43,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:43,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-06_00-40-43.log] [testng] 00:40:43,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@616c7f82 - End of configuration. [testng] [2024-11-06 00:40:47,788] [pool-1-thread-5] Initializing /data/samples/CBW8.TGA: [testng] [2024-11-06 00:40:47,940] [pool-1-thread-1] Initializing /data/samples/CTC16.TGA: [testng] [2024-11-06 00:40:48,103] [pool-1-thread-6] Initializing /data/samples/FLAG_B24.TGA: [testng] [2024-11-06 00:40:48,265] [pool-1-thread-2] Initializing /data/samples/FLAG_B16.TGA: [testng] [2024-11-06 00:40:48,421] [pool-1-thread-3] Initializing /data/samples/UTC16.TGA: [testng] [2024-11-06 00:40:48,595] [pool-1-thread-11] Initializing /data/samples/XING_B24.TGA: [testng] [2024-11-06 00:40:48,744] [pool-1-thread-7] Initializing /data/samples/MARBLES.TGA: [testng] [2024-11-06 00:40:48,921] [pool-1-thread-9] Initializing /data/samples/XING_T32.TGA: [testng] [2024-11-06 00:40:49,096] [pool-1-thread-12] Initializing /data/samples/XING_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS