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Started by upstream project "BIOFORMATS-test-repo" build number 247 originally caused by: Started by upstream project "Trigger" build number 271 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins13358754805450495867.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38866_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:49:26,738 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:49:26,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:49:26,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:26,740 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:26,741 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:49:26,741 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:49:26,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:49:26,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:26,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:26,742 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:49:26,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:49:26,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:49:26,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:49:26,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:49:26,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:49:26,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:49:26,933 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:49:26,933 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:49:26,933 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:49:26,933 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:49:26,933 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:49:26,934 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:49:26,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-06 00:49:26,943] [main] java.version = 17.0.2 [testng] 00:49:26,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:49:26,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:26,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-06_00-49-26.log] [testng] 00:49:26,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-06 00:49:26,992] [main] testng.directory = /data [testng] [2024-11-06 00:49:26,993] [main] testng.configDirectory = /config [testng] [2024-11-06 00:49:27,002] [main] testng.multiplier = 1.0 [testng] [2024-11-06 00:49:27,003] [main] testng.in-memory = false [testng] [2024-11-06 00:49:27,003] [main] testng.allow-missing = false [testng] [2024-11-06 00:49:27,003] [main] user.language = en [testng] [2024-11-06 00:49:27,003] [main] user.country = ${user.country} [testng] [2024-11-06 00:49:27,003] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-06 00:50:02,999] [main] ---------------------------------------- [testng] [2024-11-06 00:50:02,999] [main] Total files: 259 [testng] [2024-11-06 00:50:02,999] [main] Scan time: 35.996 s (138 ms/file) [testng] [2024-11-06 00:50:02,999] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-06 00:58:15,284] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 00:58:15,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:58:15,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:15,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-06_00-58-15.log] [testng] 00:58:15,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19b09a97 - End of configuration. [testng] [2024-11-06 00:58:22,721] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] 00:58:22,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:58:22,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:22,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-06_00-58-22.log] [testng] 00:58:22,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66b107cd - End of configuration. [testng] [2024-11-06 00:58:23,038] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] 00:58:23,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:58:23,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:23,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-06_00-58-23.log] [testng] 00:58:23,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f886058 - End of configuration. [testng] [2024-11-06 00:58:23,257] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] 00:58:23,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:58:23,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:23,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-06_00-58-23.log] [testng] 00:58:23,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aa4b958 - End of configuration. [testng] [2024-11-06 00:58:23,645] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] 00:58:23,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:58:23,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:23,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-06_00-58-23.log] [testng] 00:58:23,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a002f1 - End of configuration. [testng] [2024-11-06 00:58:23,817] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] 00:58:23,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:58:23,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:23,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-06_00-58-23.log] [testng] 00:58:23,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fcb720b - End of configuration. [testng] [2024-11-06 00:58:24,111] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] 00:58:24,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:58:24,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:24,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-06_00-58-24.log] [testng] 00:58:24,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32f860d - End of configuration. [testng] [2024-11-06 00:58:24,536] [pool-1-thread-6] Initializing /data/stefan/cytosol_03e.oib: [testng] 00:58:24,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:58:24,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:24,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-06_00-58-24.log] [testng] 00:58:24,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b40e4ec - End of configuration. [testng] [2024-11-06 00:58:25,226] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 00:58:25,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:58:25,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:25,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-06_00-58-25.log] [testng] 00:58:25,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65af82f8 - End of configuration. [testng] [2024-11-06 00:58:25,574] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] 00:58:25,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:58:25,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:25,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-06_00-58-25.log] [testng] 00:58:25,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a87b0b0 - End of configuration. [testng] [2024-11-06 00:58:26,035] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] 00:58:26,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:58:26,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:26,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-06_00-58-26.log] [testng] 00:58:26,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47b92663 - End of configuration. [testng] [2024-11-06 00:58:27,659] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] 00:58:27,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:58:27,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:27,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-06_00-58-27.log] [testng] 00:58:27,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10033bd5 - End of configuration. [testng] [2024-11-06 00:58:31,597] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-06 00:58:32,149] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-06 00:58:32,776] [pool-1-thread-4] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-06 00:58:39,208] [pool-1-thread-7] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-06 00:58:40,701] [pool-1-thread-12] Initializing /data/marc/V0606L.oib: [testng] [2024-11-06 00:58:43,074] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-06 00:58:45,044] [pool-1-thread-11] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-06 00:58:46,440] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-11-06 00:58:48,299] [pool-1-thread-6] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-06 00:58:49,995] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-06 00:58:52,059] [pool-1-thread-9] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-06 00:58:53,011] [pool-1-thread-2] Initializing /data/marc/V0606J.oib: [testng] [2024-11-06 00:58:54,655] [pool-1-thread-7] Initializing /data/glen/simulstack.oif: [testng] [2024-11-06 00:58:57,343] [pool-1-thread-11] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-11-06 00:58:58,357] [pool-1-thread-12] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-06 00:58:59,440] [pool-1-thread-9] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-06 00:59:03,194] [pool-1-thread-12] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-06 00:59:09,696] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-06 00:59:14,511] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-06 00:59:14,974] [pool-1-thread-2] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-06 00:59:17,583] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-06 00:59:20,001] [pool-1-thread-2] Initializing /data/allan/62909#1.oib: [testng] [2024-11-06 00:59:21,205] [pool-1-thread-8] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-06 00:59:23,363] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-06 00:59:24,562] [pool-1-thread-11] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-06 00:59:26,909] [pool-1-thread-8] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-06 00:59:29,242] [pool-1-thread-2] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-06 00:59:36,224] [pool-1-thread-8] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-06 00:59:37,426] [pool-1-thread-12] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-06 00:59:38,061] [pool-1-thread-11] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-06 00:59:41,511] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-06 00:59:42,765] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-06 00:59:43,318] [pool-1-thread-11] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-06 00:59:46,430] [pool-1-thread-8] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-06 00:59:47,803] [pool-1-thread-12] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-06 01:00:07,269] [pool-1-thread-8] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-06 01:00:08,050] [pool-1-thread-11] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-06 01:00:29,429] [pool-1-thread-8] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-06 01:00:30,557] [pool-1-thread-5] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-06 01:01:01,156] [pool-1-thread-10] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-06 01:01:50,849] [pool-1-thread-8] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-06 01:01:58,274] [pool-1-thread-8] Initializing /data/david/Image0016.oib: [testng] [2024-11-06 01:02:04,459] [pool-1-thread-8] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-06 01:03:03,605] [pool-1-thread-8] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-06 01:03:10,462] [pool-1-thread-8] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-06 01:03:40,045] [pool-1-thread-8] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-06 01:03:47,825] [pool-1-thread-8] Initializing /data/jae/Image0001.oib: [testng] [2024-11-06 01:03:55,102] [pool-1-thread-8] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-06 01:04:14,839] [pool-1-thread-8] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-06 01:05:00,733] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-06 01:05:06,626] [pool-1-thread-8] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-06 01:05:08,779] [pool-1-thread-8] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-06 01:05:14,490] [pool-1-thread-8] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-06 01:05:17,309] [pool-1-thread-8] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-06 01:08:29,798] [pool-1-thread-6] Initializing /data/johannes/step4.bmp: [testng] [2024-11-06 01:08:33,364] [pool-1-thread-6] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-06 01:08:40,744] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-06 01:08:50,154] [pool-1-thread-6] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-06 01:08:55,495] [pool-1-thread-6] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-06 01:09:31,971] [pool-1-thread-6] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-06 01:09:39,062] [pool-1-thread-6] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-06 01:16:46,156] [pool-1-thread-7] Initializing /data/sten/01.oib: [testng] [2024-11-06 01:16:50,890] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-06 01:16:55,799] [pool-1-thread-7] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-06 01:18:01,521] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-06 01:18:05,710] [pool-1-thread-9] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-06 01:19:00,647] [pool-1-thread-9] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-06 01:19:06,708] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-06 01:19:10,969] [pool-1-thread-9] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-06 01:19:16,903] [pool-1-thread-9] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-06 01:19:25,083] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-11-06 01:19:34,383] [pool-1-thread-9] Initializing /data/glen/111407.oif: [testng] [2024-11-06 01:20:35,605] [pool-1-thread-4] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-06 01:20:39,884] [pool-1-thread-4] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-06 01:20:44,039] [pool-1-thread-4] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-06 01:26:49,869] [pool-1-thread-5] Initializing /data/monica/Image0056.oif: [testng] [2024-11-06 01:28:03,328] [pool-1-thread-5] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-06 01:28:11,841] [pool-1-thread-5] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-06 01:28:22,406] [pool-1-thread-5] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-06 01:28:28,847] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-06 01:28:35,307] [pool-1-thread-5] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-06 01:30:31,263] [pool-1-thread-10] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-06 01:30:59,505] [pool-1-thread-3] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-06 01:31:21,152] [pool-1-thread-11] Initializing /data/christian/20min.oif: [testng] [2024-11-06 01:31:29,378] [pool-1-thread-3] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-06 01:31:56,072] [pool-1-thread-11] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-06 01:32:03,416] [pool-1-thread-11] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-06 01:32:21,604] [pool-1-thread-3] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-06 01:32:23,555] [pool-1-thread-2] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-06 01:32:30,290] [pool-1-thread-3] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-06 01:32:38,393] [pool-1-thread-3] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-06 01:33:11,592] [pool-1-thread-2] Initializing /data/glen/Image0002.oif: [testng] [2024-11-06 01:34:06,985] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-06 01:34:09,395] [pool-1-thread-5] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-06 01:34:16,086] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-06 01:34:24,551] [pool-1-thread-5] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-06 01:34:31,219] [pool-1-thread-5] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-06 01:34:38,557] [pool-1-thread-5] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-06 01:34:45,469] [pool-1-thread-5] Initializing /data/michael/CELL3.oib: [testng] [2024-11-06 01:34:51,474] [pool-1-thread-5] Initializing /data/brian/FLIP.oib: [testng] [2024-11-06 01:34:59,597] [pool-1-thread-5] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-06 01:35:06,821] [pool-1-thread-5] Initializing /data/johannes/step1.bmp: [testng] [2024-11-06 01:35:10,110] [pool-1-thread-5] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-06 01:35:39,261] [pool-1-thread-11] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-06 01:35:46,056] [pool-1-thread-11] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-06 01:36:17,565] [pool-1-thread-3] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-06 01:36:25,021] [pool-1-thread-3] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-06 01:36:30,727] [pool-1-thread-3] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-06 01:36:38,933] [pool-1-thread-3] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-06 01:36:51,188] [pool-1-thread-4] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-06 01:36:53,999] [pool-1-thread-4] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-06 01:38:06,239] [pool-1-thread-12] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-06 01:38:16,744] [pool-1-thread-4] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-06 01:39:01,722] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-06 01:39:13,898] [pool-1-thread-12] Initializing /data/karl/Image0009.oib: [testng] [2024-11-06 01:39:23,614] [pool-1-thread-12] Initializing /data/molly/11OCT2.OIF: [testng] [2024-11-06 01:42:10,397] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-06 01:42:19,546] [pool-1-thread-9] Initializing /data/johannes/step3.bmp: [testng] [2024-11-06 01:42:23,142] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-06 01:42:33,390] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-06 01:42:43,490] [pool-1-thread-9] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-06 01:42:53,856] [pool-1-thread-9] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-06 01:45:39,058] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-06 01:45:49,569] [pool-1-thread-6] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-06 01:46:26,005] [pool-1-thread-10] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-06 01:46:32,907] [pool-1-thread-10] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-06 01:47:09,392] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-06 01:47:16,346] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-06 01:54:35,416] [pool-1-thread-6] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-06 01:54:41,189] [pool-1-thread-6] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-06 01:54:49,717] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-06 01:54:57,986] [pool-1-thread-6] Initializing /data/johannes/step2.bmp: [testng] 02:12:15,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:12:15,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:15,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-06_02-12-15.log] [testng] 02:12:15,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d721527 - End of configuration. [testng] 02:45:40,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:45:40,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:40,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-06_02-45-40.log] [testng] 02:45:40,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eb1b2d5 - End of configuration. [testng] 03:18:44,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:18:44,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:44,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-06_03-18-44.log] [testng] 03:18:44,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13b15955 - End of configuration. [testng] 03:24:42,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:24:42,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:24:42,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-06_03-24-42.log] [testng] 03:24:42,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f467bb9 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 155 minutes 21 seconds Finished: SUCCESS