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Started by upstream project "BIOFORMATS-test-repo" build number 247 originally caused by: Started by upstream project "Trigger" build number 271 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins15019530106908762821.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38953_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:58:55,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:58:55,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 03:58:55,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:58:55,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:58:55,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:58:55,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:58:55,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:58:55,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:58:55,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:58:55,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:58:55,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:58:55,916 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:58:56,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:58:56,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:58:56,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:58:56,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:58:56,106 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:58:56,106 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:58:56,106 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:58:56,106 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:58:56,106 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 03:58:56,107 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 03:58:56,108 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-06 03:58:56,116] [main] java.version = 17.0.2 [testng] 03:58:56,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:58:56,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:58:56,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-06_03-58-56.log] [testng] 03:58:56,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-06 03:58:56,163] [main] testng.directory = /data [testng] [2024-11-06 03:58:56,163] [main] testng.configDirectory = /config [testng] [2024-11-06 03:58:56,171] [main] testng.multiplier = 1.0 [testng] [2024-11-06 03:58:56,172] [main] testng.in-memory = false [testng] [2024-11-06 03:58:56,172] [main] testng.allow-missing = false [testng] [2024-11-06 03:58:56,172] [main] user.language = en [testng] [2024-11-06 03:58:56,172] [main] user.country = ${user.country} [testng] [2024-11-06 03:58:56,172] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-06 04:01:50,686] [main] ---------------------------------------- [testng] [2024-11-06 04:01:50,687] [main] Total files: 15735 [testng] [2024-11-06 04:01:50,687] [main] Scan time: 174.514 s (11 ms/file) [testng] [2024-11-06 04:01:50,687] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-06 04:04:46,563] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 04:04:46,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:04:46,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:46,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-06_04-04-46.log] [testng] 04:04:46,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eece70e - End of configuration. [testng] [2024-11-06 04:04:47,336] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 04:04:47,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:04:47,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:47,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-06_04-04-47.log] [testng] 04:04:47,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f1a324c - End of configuration. [testng] [2024-11-06 04:04:48,666] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 04:04:48,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:04:48,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:48,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-06_04-04-48.log] [testng] 04:04:48,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@181a0978 - End of configuration. [testng] [2024-11-06 04:04:49,394] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 04:04:49,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:04:49,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:49,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-06_04-04-49.log] [testng] 04:04:49,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14d1d5bf - End of configuration. [testng] [2024-11-06 04:04:52,170] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 04:04:52,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:04:52,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:52,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-06_04-04-52.log] [testng] 04:04:52,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fb8523a - End of configuration. [testng] [2024-11-06 04:04:53,766] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 04:04:53,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:04:53,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:53,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-06_04-04-53.log] [testng] 04:04:53,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58c2a7a0 - End of configuration. [testng] [2024-11-06 04:04:54,878] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 04:04:54,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:04:54,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:54,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-06_04-04-54.log] [testng] 04:04:54,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2499dda5 - End of configuration. [testng] [2024-11-06 04:04:55,808] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 04:04:55,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:04:55,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:55,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-06_04-04-55.log] [testng] 04:04:55,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ec81fc6 - End of configuration. [testng] [2024-11-06 04:04:56,630] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 04:04:56,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:04:56,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:56,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-06_04-04-56.log] [testng] 04:04:56,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c266dbc - End of configuration. [testng] [2024-11-06 04:04:57,396] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 04:04:57,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:04:57,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:57,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-06_04-04-57.log] [testng] 04:04:57,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43f76850 - End of configuration. [testng] [2024-11-06 04:04:58,049] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 04:04:58,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:04:58,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:58,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-06_04-04-58.log] [testng] 04:04:58,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19a32b73 - End of configuration. [testng] [2024-11-06 04:04:58,657] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 04:04:58,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:04:58,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:04:58,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-06_04-04-58.log] [testng] 04:04:58,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ca29762 - End of configuration. [testng] [2024-11-06 04:05:15,645] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-11-06 04:05:22,737] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-11-06 04:05:24,142] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-11-06 04:05:51,430] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-11-06 04:08:16,415] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-11-06 04:08:21,525] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-11-06 04:08:33,367] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-11-06 04:08:55,385] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-11-06 04:09:40,775] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-11-06 04:10:11,583] [pool-1-thread-4] Initializing /data/converted/michel/a.tif: [testng] [2024-11-06 04:10:17,743] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-11-06 04:10:32,693] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-11-06 04:10:46,635] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-11-06 04:11:18,911] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-11-06 04:11:31,832] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-11-06 04:11:56,934] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-11-06 04:12:07,439] [pool-1-thread-12] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-11-06 04:12:08,806] [pool-1-thread-2] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-11-06 04:12:30,274] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-11-06 04:12:33,028] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-11-06 04:13:06,459] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-11-06 04:13:34,216] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-11-06 04:13:37,460] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-11-06 04:14:02,421] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-11-06 04:14:25,946] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-11-06 04:14:34,411] [pool-1-thread-7] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-11-06 04:14:47,254] [pool-1-thread-8] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-11-06 04:14:58,411] [pool-1-thread-12] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-11-06 04:15:07,926] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-11-06 04:15:39,604] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-11-06 04:16:07,049] [pool-1-thread-2] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-11-06 04:17:13,684] [pool-1-thread-2] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-11-06 04:18:09,467] [pool-1-thread-2] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-11-06 04:18:56,880] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-11-06 04:19:01,185] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-11-06 04:24:14,125] [pool-1-thread-6] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-11-06 04:25:38,318] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-11-06 04:26:43,961] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif: [testng] [2024-11-06 04:27:21,257] [pool-1-thread-1] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-11-06 04:27:23,627] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-11-06 04:28:10,395] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-11-06 04:28:28,146] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-11-06 04:28:55,116] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-11-06 04:29:04,792] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-11-06 04:29:28,844] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-11-06 04:31:30,039] [pool-1-thread-2] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-11-06 04:33:50,481] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-11-06 04:36:43,130] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-11-06 04:37:52,479] [pool-1-thread-12] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-11-06 04:38:58,052] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-11-06 04:40:11,877] [pool-1-thread-1] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-11-06 04:40:39,342] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-11-06 04:46:18,858] [pool-1-thread-10] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-11-06 04:47:01,603] [pool-1-thread-10] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-11-06 04:47:22,952] [pool-1-thread-3] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-11-06 04:47:35,710] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-11-06 04:48:26,031] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-11-06 04:51:16,120] [pool-1-thread-4] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-11-06 04:51:50,792] [pool-1-thread-12] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-11-06 04:52:00,481] [pool-1-thread-4] Initializing /data/scott/Slide133-04.tif: [testng] [2024-11-06 04:52:50,729] [pool-1-thread-4] Initializing /data/converted/converted/2chz.tif: [testng] [2024-11-06 04:53:01,844] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-11-06 04:55:48,495] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-11-06 04:58:37,741] [pool-1-thread-12] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-11-06 04:58:43,257] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-11-06 04:58:52,350] [pool-1-thread-4] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-11-06 04:59:42,763] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-11-06 04:59:52,029] [pool-1-thread-6] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-11-06 05:00:01,812] [pool-1-thread-5] Initializing /data/converted/michel/c.tif: [testng] [2024-11-06 05:00:39,431] [pool-1-thread-6] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-11-06 05:01:10,117] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-11-06 05:01:18,308] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-11-06 05:01:23,282] [pool-1-thread-4] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-11-06 05:02:21,096] [pool-1-thread-6] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-11-06 05:04:32,715] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-11-06 05:06:09,030] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-11-06 05:06:18,291] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-11-06 05:07:22,585] [pool-1-thread-3] Initializing /data/converted/dietmar/138.tif: [testng] [2024-11-06 05:08:46,039] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-11-06 05:10:48,319] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-11-06 05:13:35,693] [pool-1-thread-12] Initializing /data/converted/dietmar/137.tif: [testng] [2024-11-06 05:14:12,274] [pool-1-thread-10] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-11-06 05:14:29,000] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-11-06 05:15:34,484] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-11-06 05:17:02,789] [pool-1-thread-4] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-11-06 05:17:17,331] [pool-1-thread-10] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-11-06 05:17:42,482] [pool-1-thread-6] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-11-06 05:17:45,068] [pool-1-thread-1] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-11-06 05:17:56,500] [pool-1-thread-4] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-11-06 05:18:24,101] [pool-1-thread-1] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-11-06 05:18:29,484] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-11-06 05:18:43,885] [pool-1-thread-4] Initializing /data/scott/Slide133-11.tif: [testng] [2024-11-06 05:19:14,628] [pool-1-thread-1] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-11-06 05:19:20,021] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-11-06 05:19:22,529] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-11-06 05:20:29,151] [pool-1-thread-3] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-11-06 05:21:13,371] [pool-1-thread-3] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-11-06 05:21:30,816] [pool-1-thread-2] Initializing /data/converted/michel/d.tif: [testng] [2024-11-06 05:21:35,866] [pool-1-thread-7] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-11-06 05:22:25,395] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-11-06 05:22:27,962] [pool-1-thread-7] Initializing /data/scott/Slide133-01.tif: [testng] [2024-11-06 05:23:05,642] [pool-1-thread-2] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-11-06 05:23:10,933] [pool-1-thread-7] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-11-06 05:23:23,760] [pool-1-thread-6] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-11-06 05:24:01,406] [pool-1-thread-6] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-11-06 05:24:18,361] [pool-1-thread-7] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-11-06 05:24:49,699] [pool-1-thread-6] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-11-06 05:24:57,430] [pool-1-thread-12] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-11-06 05:25:32,510] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-11-06 05:25:44,565] [pool-1-thread-12] Initializing /data/converted/nicolas/image.tif: [testng] [2024-11-06 05:26:03,556] [pool-1-thread-9] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-11-06 05:26:22,294] [pool-1-thread-9] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-11-06 05:26:27,323] [pool-1-thread-12] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 06:15:51,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:15:51,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:15:51,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-06_06-15-51.log] [testng] 06:15:51,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44e0b54f - End of configuration. [testng] 06:21:25,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:21:25,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:21:25,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-06_06-21-25.log] [testng] 06:21:25,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5039de18 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 142 minutes 35 seconds Finished: SUCCESS