![[Jenkins]](/jenkins/static/03a0bb70/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 247 originally caused by: Started by upstream project "Trigger" build number 271 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins11142475234183622555.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38980_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:23:57,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:23:57,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 05:23:57,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:23:57,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:23:57,414 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:23:57,415 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:23:57,415 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:23:57,415 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:23:57,415 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:23:57,416 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:23:57,416 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:23:57,416 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:23:57,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:23:57,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:23:57,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:23:57,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:23:57,603 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:23:57,603 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:23:57,603 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:23:57,603 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:23:57,603 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 05:23:57,604 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 05:23:57,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-06 05:23:57,613] [main] java.version = 17.0.2 [testng] 05:23:57,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:23:57,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:57,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-06_05-23-57.log] [testng] 05:23:57,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-06 05:23:57,658] [main] testng.directory = /data [testng] [2024-11-06 05:23:57,658] [main] testng.configDirectory = /config [testng] [2024-11-06 05:23:57,667] [main] testng.multiplier = 1.0 [testng] [2024-11-06 05:23:57,667] [main] testng.in-memory = false [testng] [2024-11-06 05:23:57,667] [main] testng.allow-missing = false [testng] [2024-11-06 05:23:57,667] [main] user.language = en [testng] [2024-11-06 05:23:57,668] [main] user.country = ${user.country} [testng] [2024-11-06 05:23:57,668] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-06 05:24:39,277] [main] ---------------------------------------- [testng] [2024-11-06 05:24:39,277] [main] Total files: 31 [testng] [2024-11-06 05:24:39,278] [main] Scan time: 41.609 s (1342 ms/file) [testng] [2024-11-06 05:24:39,278] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-06 05:25:26,564] [pool-1-thread-1] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 05:25:26,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:25:26,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:26,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-06_05-25-26.log] [testng] 05:25:26,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43a15e50 - End of configuration. [testng] [2024-11-06 05:25:32,037] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2: [testng] 05:25:32,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:25:32,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:32,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-06_05-25-32.log] [testng] 05:25:32,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ccc56f1 - End of configuration. [testng] [2024-11-06 05:25:32,937] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2: [testng] 05:25:32,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:25:32,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:32,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-06_05-25-32.log] [testng] 05:25:32,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d573ad7 - End of configuration. [testng] [2024-11-06 05:25:33,946] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 05:25:33,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:25:33,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:33,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-06_05-25-33.log] [testng] 05:25:33,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4762f9be - End of configuration. [testng] [2024-11-06 05:25:34,861] [pool-1-thread-9] Initializing /data/vikram/Captured 3.jp2: [testng] 05:25:34,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:25:34,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:34,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-06_05-25-34.log] [testng] 05:25:34,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@653ff1c0 - End of configuration. [testng] [2024-11-06 05:25:35,887] [pool-1-thread-8] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 05:25:35,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:25:35,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:35,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-06_05-25-35.log] [testng] 05:25:35,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a52d55d - End of configuration. [testng] [2024-11-06 05:25:36,808] [pool-1-thread-7] Initializing /data/david/cy5-tph.jp2: [testng] 05:25:36,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:25:36,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:36,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-06_05-25-36.log] [testng] 05:25:36,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@520dad48 - End of configuration. [testng] [2024-11-06 05:25:37,723] [pool-1-thread-6] Initializing /data/big-images/2kx2k.jpf: [testng] 05:25:37,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:25:37,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:37,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-06_05-25-37.log] [testng] 05:25:37,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e6a04d - End of configuration. [testng] [2024-11-06 05:25:38,602] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] 05:25:38,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:25:38,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:38,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-06_05-25-38.log] [testng] 05:25:38,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44a7d508 - End of configuration. [testng] [2024-11-06 05:25:39,909] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 05:25:39,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:25:39,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:39,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-06_05-25-39.log] [testng] 05:25:39,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54b6a6a0 - End of configuration. [testng] [2024-11-06 05:25:42,136] [pool-1-thread-3] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 05:25:42,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:25:42,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:42,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-06_05-25-42.log] [testng] 05:25:42,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@324eee32 - End of configuration. [testng] [2024-11-06 05:25:43,138] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 05:25:43,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:25:43,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:25:43,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-06_05-25-43.log] [testng] 05:25:43,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ed63b38 - End of configuration. [testng] [2024-11-06 05:25:53,702] [pool-1-thread-12] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-11-06 05:25:54,976] [pool-1-thread-9] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-11-06 05:25:59,967] [pool-1-thread-8] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-11-06 05:26:01,129] [pool-1-thread-6] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-11-06 05:26:02,177] [pool-1-thread-10] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-11-06 05:26:03,187] [pool-1-thread-1] Initializing /data/kraig/head.jp2: [testng] [2024-11-06 05:26:04,447] [pool-1-thread-4] Initializing /data/frans/flower.jp2: [testng] [2024-11-06 05:26:06,613] [pool-1-thread-3] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-11-06 05:26:07,698] [pool-1-thread-5] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2024-11-06 05:26:08,018] [pool-1-thread-11] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-11-06 05:26:10,497] [pool-1-thread-2] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-11-06 05:26:11,716] [pool-1-thread-12] Initializing /data/david/000000_000001.jpx: [testng] [2024-11-06 05:26:18,318] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-11-06 05:26:19,977] [pool-1-thread-8] Initializing /data/vikram/Captured 4.jp2: [testng] [2024-11-06 05:26:22,431] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-11-06 05:26:25,427] [pool-1-thread-3] Initializing /data/vikram/Captured 5.jp2: [testng] [2024-11-06 05:26:31,816] [pool-1-thread-12] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-11-06 05:26:32,779] [pool-1-thread-8] Initializing /data/misc/clown-rgb.jpc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 minutes 18 seconds Finished: SUCCESS