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Started by upstream project "BIOFORMATS-test-repo" build number 248 originally caused by: Started by upstream project "Trigger" build number 272 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3148704516208872300.sh + '[' fluoview = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39087_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:20:31,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:20:31,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 03:20:31,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:20:31,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:20:31,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:20:31,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:20:31,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:20:31,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:20:31,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:20:31,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:20:31,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:20:31,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:20:31,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:20:31,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:20:31,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:20:31,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:20:31,836 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:20:31,836 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:20:31,836 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:20:31,836 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:20:31,836 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 03:20:31,837 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 03:20:31,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-07 03:20:31,847] [main] java.version = 21 [testng] 03:20:31,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:20:31,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:31,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-07_03-20-31.log] [testng] 03:20:31,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-07 03:20:31,897] [main] testng.directory = /data [testng] [2024-11-07 03:20:31,897] [main] testng.configDirectory = /config [testng] [2024-11-07 03:20:31,906] [main] testng.multiplier = 1.0 [testng] [2024-11-07 03:20:31,907] [main] testng.in-memory = false [testng] [2024-11-07 03:20:31,907] [main] testng.allow-missing = false [testng] [2024-11-07 03:20:31,907] [main] user.language = en [testng] [2024-11-07 03:20:31,907] [main] user.country = ${user.country} [testng] [2024-11-07 03:20:31,907] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-07 03:20:34,165] [main] ---------------------------------------- [testng] [2024-11-07 03:20:34,165] [main] Total files: 14 [testng] [2024-11-07 03:20:34,165] [main] Scan time: 2.258 s (161 ms/file) [testng] [2024-11-07 03:20:34,166] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-07 03:20:48,710] [pool-1-thread-1] Initializing /data/timg/LiveOne.tif: [testng] 03:20:48,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:20:48,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:48,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-07_03-20-48.log] [testng] 03:20:48,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76e89004 - End of configuration. [testng] [2024-11-07 03:20:49,410] [pool-1-thread-12] Initializing /data/timg/eric-three.tif: [testng] 03:20:49,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:20:49,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:49,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-07_03-20-49.log] [testng] 03:20:49,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cb61c6c - End of configuration. [testng] [2024-11-07 03:20:50,091] [pool-1-thread-11] Initializing /data/timg/eric-one.tif: [testng] 03:20:50,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:20:50,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:50,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-07_03-20-50.log] [testng] 03:20:50,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44913642 - End of configuration. [testng] [2024-11-07 03:20:50,824] [pool-1-thread-10] Initializing /data/timg/LiveThree-xyzt.tif: [testng] 03:20:50,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:20:50,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:50,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-07_03-20-50.log] [testng] 03:20:50,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@168413f9 - End of configuration. [testng] [2024-11-07 03:20:51,509] [pool-1-thread-9] Initializing /data/timg/eric-three-projection.tif: [testng] 03:20:51,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:20:51,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:51,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-07_03-20-51.log] [testng] 03:20:51,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13a85bd5 - End of configuration. [testng] [2024-11-07 03:20:52,226] [pool-1-thread-8] Initializing /data/timg/E1-v2(11 som).tif: [testng] 03:20:52,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:20:52,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:52,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-07_03-20-52.log] [testng] 03:20:52,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@80175f3 - End of configuration. [testng] [2024-11-07 03:20:52,934] [pool-1-thread-7] Initializing /data/timg/eric-one-3d.tif: [testng] 03:20:52,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:20:52,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:52,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-07_03-20-52.log] [testng] 03:20:52,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79d2f36a - End of configuration. [testng] [2024-11-07 03:20:53,618] [pool-1-thread-6] Initializing /data/timg/LiveTwo.tif: [testng] 03:20:53,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:20:53,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:53,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-07_03-20-53.log] [testng] 03:20:53,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f553e27 - End of configuration. [testng] [2024-11-07 03:20:54,333] [pool-1-thread-5] Initializing /data/aaron/olympus_fv500.tif: [testng] 03:20:54,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:20:54,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:54,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-07_03-20-54.log] [testng] 03:20:54,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ab030c2 - End of configuration. [testng] [2024-11-07 03:20:55,070] [pool-1-thread-4] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif: [testng] 03:20:55,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:20:55,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:55,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-07_03-20-55.log] [testng] 03:20:55,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@978790d - End of configuration. [testng] [2024-11-07 03:20:55,729] [pool-1-thread-3] Initializing /data/brian/DBTRG 2X 1a-1.tif: [testng] 03:20:55,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:20:55,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:55,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-07_03-20-55.log] [testng] 03:20:55,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e4f8cc8 - End of configuration. [testng] [2024-11-07 03:20:56,438] [pool-1-thread-2] Initializing /data/shalin/40xNA0.6-512x512.tif: [testng] 03:20:56,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:20:56,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:56,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-07_03-20-56.log] [testng] 03:20:56,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ead2695 - End of configuration. [testng] [2024-11-07 03:21:04,239] [pool-1-thread-1] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 41 seconds Finished: SUCCESS