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Started by upstream project "BIOFORMATS-test-repo" build number 249 originally caused by: Started by upstream project "Trigger" build number 273 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins13711709429308976562.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39153_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:21:33,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:33,333 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:21:33,333 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:33,334 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:33,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:33,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:33,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:33,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:33,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:33,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:33,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:33,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:33,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:33,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:33,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:33,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:33,601 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:33,602 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:33,602 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:33,602 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:33,602 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:21:33,603 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:21:33,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-08 00:21:33,613] [main] java.version = 1.8.0_342 [testng] 00:21:33,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:33,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:33,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_00-21-33.log] [testng] 00:21:33,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-08 00:21:33,664] [main] testng.directory = /data [testng] [2024-11-08 00:21:33,664] [main] testng.configDirectory = /config [testng] [2024-11-08 00:21:33,676] [main] testng.multiplier = 1.0 [testng] [2024-11-08 00:21:33,676] [main] testng.in-memory = false [testng] [2024-11-08 00:21:33,676] [main] testng.allow-missing = false [testng] [2024-11-08 00:21:33,676] [main] user.language = en [testng] [2024-11-08 00:21:33,676] [main] user.country = ${user.country} [testng] [2024-11-08 00:21:33,676] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-08 00:21:34,444] [main] ---------------------------------------- [testng] [2024-11-08 00:21:34,444] [main] Total files: 36 [testng] [2024-11-08 00:21:34,444] [main] Scan time: 0.768 s (21 ms/file) [testng] [2024-11-08 00:21:34,444] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-08 00:21:36,566] [pool-1-thread-1] Initializing /data/generated/mri-stack12.pcx: [testng] 00:21:36,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:21:36,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_00-21-36.log] [testng] 00:21:36,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d838507 - End of configuration. [testng] [2024-11-08 00:21:36,641] [pool-1-thread-12] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] 00:21:36,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:21:36,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_00-21-36.log] [testng] 00:21:36,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56548515 - End of configuration. [testng] [2024-11-08 00:21:36,662] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx: [testng] 00:21:36,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:21:36,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_00-21-36.log] [testng] 00:21:36,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10f2d91d - End of configuration. [testng] [2024-11-08 00:21:36,677] [pool-1-thread-10] Initializing /data/generated/mri-stack4.pcx: [testng] 00:21:36,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:21:36,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_00-21-36.log] [testng] 00:21:36,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5382370 - End of configuration. [testng] [2024-11-08 00:21:36,694] [pool-1-thread-9] Initializing /data/generated/mri-stack6.pcx: [testng] 00:21:36,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:21:36,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_00-21-36.log] [testng] 00:21:36,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38c494a9 - End of configuration. [testng] [2024-11-08 00:21:36,711] [pool-1-thread-8] Initializing /data/generated/mri-stack10.pcx: [testng] 00:21:36,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:21:36,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_00-21-36.log] [testng] 00:21:36,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37954796 - End of configuration. [testng] [2024-11-08 00:21:36,725] [pool-1-thread-7] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 00:21:36,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:21:36,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_00-21-36.log] [testng] 00:21:36,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66983719 - End of configuration. [testng] [2024-11-08 00:21:36,743] [pool-1-thread-6] Initializing /data/generated/mri-stack3.pcx: [testng] 00:21:36,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:21:36,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_00-21-36.log] [testng] 00:21:36,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@330e82a4 - End of configuration. [testng] [2024-11-08 00:21:36,756] [pool-1-thread-5] Initializing /data/generated/mri-stack14.pcx: [testng] 00:21:36,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:21:36,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_00-21-36.log] [testng] 00:21:36,757 |-INFO in ch.qos.logback.core.sift.SiftProcessor@877dac4 - End of configuration. [testng] [2024-11-08 00:21:36,771] [pool-1-thread-4] Initializing /data/generated/mri-stack19.pcx: [testng] 00:21:36,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:21:36,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_00-21-36.log] [testng] 00:21:36,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8baa8a - End of configuration. [testng] [2024-11-08 00:21:36,780] [pool-1-thread-3] Initializing /data/generated/mri-stack17.pcx: [testng] 00:21:36,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:21:36,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_00-21-36.log] [testng] 00:21:36,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d58301 - End of configuration. [testng] [2024-11-08 00:21:36,789] [pool-1-thread-2] Initializing /data/generated/mri-stack7.pcx: [testng] 00:21:36,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:21:36,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_00-21-36.log] [testng] 00:21:36,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56f78f24 - End of configuration. [testng] [2024-11-08 00:21:39,954] [pool-1-thread-8] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-11-08 00:21:39,963] [pool-1-thread-11] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-11-08 00:21:39,981] [pool-1-thread-6] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-11-08 00:21:39,999] [pool-1-thread-4] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-11-08 00:21:40,026] [pool-1-thread-3] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-11-08 00:21:40,034] [pool-1-thread-10] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-11-08 00:21:40,045] [pool-1-thread-12] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-11-08 00:21:40,054] [pool-1-thread-7] Initializing /data/generated/mri-stack23.pcx: [testng] [2024-11-08 00:21:40,063] [pool-1-thread-5] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-11-08 00:21:40,077] [pool-1-thread-1] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-11-08 00:21:40,092] [pool-1-thread-9] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-11-08 00:21:40,102] [pool-1-thread-2] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-11-08 00:21:41,097] [pool-1-thread-8] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-11-08 00:21:41,119] [pool-1-thread-9] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-11-08 00:21:41,159] [pool-1-thread-11] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-11-08 00:21:41,217] [pool-1-thread-2] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-11-08 00:21:41,247] [pool-1-thread-6] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-11-08 00:21:41,272] [pool-1-thread-12] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-11-08 00:21:41,302] [pool-1-thread-5] Initializing /data/generated/mri-stack5.pcx: [testng] [2024-11-08 00:21:41,329] [pool-1-thread-7] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-11-08 00:21:41,346] [pool-1-thread-3] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-11-08 00:21:41,734] [pool-1-thread-4] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-11-08 00:21:41,775] [pool-1-thread-11] Initializing /data/generated/mri-stack1.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS