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Started by upstream project "BIOFORMATS-test-repo" build number 249 originally caused by: Started by upstream project "Trigger" build number 273 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins1212622826009108139.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39155_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:21:44,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:44,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:21:44,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:44,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:44,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:44,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:44,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:44,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:44,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:44,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:44,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:44,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:44,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:44,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:44,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:44,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:44,475 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:44,475 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:44,475 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:44,476 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:44,476 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:21:44,477 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:21:44,477 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-08 00:21:44,487] [main] java.version = 1.8.0_342 [testng] 00:21:44,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:44,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:44,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_00-21-44.log] [testng] 00:21:44,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-08 00:21:44,543] [main] testng.directory = /data [testng] [2024-11-08 00:21:44,543] [main] testng.configDirectory = /config [testng] [2024-11-08 00:21:44,556] [main] testng.multiplier = 1.0 [testng] [2024-11-08 00:21:44,556] [main] testng.in-memory = false [testng] [2024-11-08 00:21:44,556] [main] testng.allow-missing = false [testng] [2024-11-08 00:21:44,556] [main] user.language = en [testng] [2024-11-08 00:21:44,556] [main] user.country = ${user.country} [testng] [2024-11-08 00:21:44,557] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-08 00:21:52,392] [main] ---------------------------------------- [testng] [2024-11-08 00:21:52,393] [main] Total files: 103 [testng] [2024-11-08 00:21:52,393] [main] Scan time: 7.835 s (76 ms/file) [testng] [2024-11-08 00:21:52,393] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-08 00:22:12,164] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] 00:22:12,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:12,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:12,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_00-22-12.log] [testng] 00:22:12,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e6033d5 - End of configuration. [testng] [2024-11-08 00:22:12,250] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] 00:22:12,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:12,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:12,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_00-22-12.log] [testng] 00:22:12,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@177ba77c - End of configuration. [testng] [2024-11-08 00:22:12,316] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] 00:22:12,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:12,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:12,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_00-22-12.log] [testng] 00:22:12,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c5956b - End of configuration. [testng] [2024-11-08 00:22:12,403] [pool-1-thread-10] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] 00:22:12,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:12,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:12,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_00-22-12.log] [testng] 00:22:12,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b85d541 - End of configuration. [testng] [2024-11-08 00:22:12,770] [pool-1-thread-9] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] 00:22:12,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:12,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:12,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_00-22-12.log] [testng] 00:22:12,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@704545cd - End of configuration. [testng] [2024-11-08 00:22:12,853] [pool-1-thread-8] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] 00:22:12,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:12,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:12,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_00-22-12.log] [testng] 00:22:12,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@429b32ce - End of configuration. [testng] [2024-11-08 00:22:13,429] [pool-1-thread-7] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] 00:22:13,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:22:13,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:13,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_00-22-13.log] [testng] 00:22:13,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23c53687 - End of configuration. [testng] [2024-11-08 00:22:13,513] [pool-1-thread-6] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] 00:22:13,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:22:13,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:13,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_00-22-13.log] [testng] 00:22:13,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e84c03a - End of configuration. [testng] [2024-11-08 00:22:13,679] [pool-1-thread-5] Initializing /data/jay/Carbon.34.dm3: [testng] 00:22:13,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:22:13,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:13,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_00-22-13.log] [testng] 00:22:13,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f498a55 - End of configuration. [testng] [2024-11-08 00:22:13,846] [pool-1-thread-4] Initializing /data/jay/dnasample1.dm3: [testng] 00:22:13,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:22:13,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:13,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_00-22-13.log] [testng] 00:22:13,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b9d7e78 - End of configuration. [testng] [2024-11-08 00:22:14,090] [pool-1-thread-3] Initializing /data/jay/camtest1.dm3: [testng] 00:22:14,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:22:14,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:14,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_00-22-14.log] [testng] 00:22:14,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71814e7 - End of configuration. [testng] [2024-11-08 00:22:14,373] [pool-1-thread-2] Initializing /data/jay/ViewDMtest.dm3: [testng] 00:22:14,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:22:14,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:14,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_00-22-14.log] [testng] 00:22:14,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72596e21 - End of configuration. [testng] [2024-11-08 00:22:18,433] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-11-08 00:22:18,595] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-11-08 00:22:19,016] [pool-1-thread-7] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-11-08 00:22:19,519] [pool-1-thread-12] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-11-08 00:22:20,590] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-11-08 00:22:21,928] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-11-08 00:22:22,171] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-11-08 00:22:22,687] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-11-08 00:22:22,915] [pool-1-thread-9] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-11-08 00:22:23,191] [pool-1-thread-2] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-11-08 00:22:25,624] [pool-1-thread-6] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-11-08 00:22:27,597] [pool-1-thread-10] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-11-08 00:22:27,806] [pool-1-thread-8] Initializing /data/ofra/lowloss.dm3: [testng] [2024-11-08 00:22:28,114] [pool-1-thread-9] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-11-08 00:22:28,761] [pool-1-thread-11] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-11-08 00:22:29,822] [pool-1-thread-6] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-11-08 00:22:30,399] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-11-08 00:22:30,886] [pool-1-thread-8] Initializing /data/jay/DMtest2.dm3: [testng] [2024-11-08 00:22:31,630] [pool-1-thread-5] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-11-08 00:22:31,844] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2024-11-08 00:22:32,551] [pool-1-thread-11] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-11-08 00:22:34,021] [pool-1-thread-7] Initializing /data/qa-7642/8.dm4: [testng] [2024-11-08 00:22:34,239] [pool-1-thread-6] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-11-08 00:22:34,460] [pool-1-thread-12] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-11-08 00:22:36,131] [pool-1-thread-10] Initializing /data/melissa/annotation-test.tif: [testng] [2024-11-08 00:22:38,374] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-11-08 00:22:39,332] [pool-1-thread-8] Initializing /data/qa-21761/example.dm4: [testng] [2024-11-08 00:22:39,533] [pool-1-thread-11] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-11-08 00:22:39,974] [pool-1-thread-7] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-11-08 00:22:40,223] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-11-08 00:22:42,076] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-11-08 00:22:42,588] [pool-1-thread-1] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-11-08 00:22:43,254] [pool-1-thread-6] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-11-08 00:22:44,760] [pool-1-thread-8] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-11-08 00:22:45,716] [pool-1-thread-9] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-11-08 00:22:47,378] [pool-1-thread-4] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-11-08 00:22:49,222] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-11-08 00:22:49,578] [pool-1-thread-8] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-11-08 00:22:50,232] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-11-08 00:22:50,884] [pool-1-thread-12] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-11-08 00:22:52,209] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-11-08 00:22:52,558] [pool-1-thread-1] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-11-08 00:22:52,804] [pool-1-thread-4] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-11-08 00:22:53,587] [pool-1-thread-6] Initializing /data/jay/smallerfile.dm3: [testng] [2024-11-08 00:22:54,315] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-11-08 00:22:54,570] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-11-08 00:22:55,547] [pool-1-thread-7] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-11-08 00:22:57,300] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-11-08 00:22:58,595] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-11-08 00:23:00,005] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-11-08 00:23:00,263] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-11-08 00:23:02,031] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-11-08 00:23:03,745] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-11-08 00:23:04,009] [pool-1-thread-8] Initializing /data/samples/test-tiles.dm3: [testng] [2024-11-08 00:23:04,241] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-11-08 00:23:04,480] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-11-08 00:23:05,179] [pool-1-thread-1] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-11-08 00:23:07,633] [pool-1-thread-4] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-11-08 00:23:09,415] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-11-08 00:23:10,173] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-11-08 00:23:10,437] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-11-08 00:23:11,784] [pool-1-thread-2] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-11-08 00:23:14,548] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-11-08 00:23:14,985] [pool-1-thread-12] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-11-08 00:23:16,237] [pool-1-thread-6] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-11-08 00:23:17,486] [pool-1-thread-8] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-11-08 00:23:19,086] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-11-08 00:23:19,364] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-11-08 00:23:19,625] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-11-08 00:23:20,415] [pool-1-thread-11] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-11-08 00:23:22,236] [pool-1-thread-3] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-11-08 00:23:23,274] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-11-08 00:23:23,830] [pool-1-thread-4] Initializing /data/jay/DMtest.dm3: [testng] [2024-11-08 00:23:24,035] [pool-1-thread-5] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-11-08 00:23:24,959] [pool-1-thread-12] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-11-08 00:23:25,192] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-11-08 00:23:25,467] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-11-08 00:23:26,164] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-11-08 00:23:28,215] [pool-1-thread-6] Initializing /data/jay/dnasample.tif: [testng] [2024-11-08 00:23:29,663] [pool-1-thread-3] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-11-08 00:23:31,027] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-11-08 00:23:31,283] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-11-08 00:23:31,680] [pool-1-thread-5] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-11-08 00:23:33,058] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2024-11-08 00:23:34,490] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-11-08 00:23:34,676] [pool-1-thread-8] Initializing /data/jay/graphitedm3.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 11 seconds Finished: SUCCESS