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Started by upstream project "BIOFORMATS-test-repo" build number 249 originally caused by: Started by upstream project "Trigger" build number 273 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins18294984950536689263.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39167_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:23:56,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:23:56,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:23:56,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:56,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:56,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:23:56,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:23:56,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:23:56,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:56,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:56,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:23:56,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:23:56,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:23:56,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:23:56,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:23:56,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:23:56,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:23:56,611 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:23:56,611 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:23:56,611 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:23:56,612 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:23:56,612 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:23:56,612 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:23:56,613 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 324 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-08 00:23:56,625] [main] java.version = 1.8.0_342 [testng] 00:23:56,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:23:56,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:56,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_00-23-56.log] [testng] 00:23:56,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-08 00:23:56,683] [main] testng.directory = /data [testng] [2024-11-08 00:23:56,684] [main] testng.configDirectory = /config [testng] [2024-11-08 00:23:56,701] [main] testng.multiplier = 1.0 [testng] [2024-11-08 00:23:56,701] [main] testng.in-memory = false [testng] [2024-11-08 00:23:56,701] [main] testng.allow-missing = false [testng] [2024-11-08 00:23:56,701] [main] user.language = en [testng] [2024-11-08 00:23:56,701] [main] user.country = ${user.country} [testng] [2024-11-08 00:23:56,702] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-08 00:23:58,043] [main] ---------------------------------------- [testng] [2024-11-08 00:23:58,043] [main] Total files: 21 [testng] [2024-11-08 00:23:58,043] [main] Scan time: 1.341 s (63 ms/file) [testng] [2024-11-08 00:23:58,044] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-08 00:24:04,878] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:24:04,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:24:04,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:04,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_00-24-04.log] [testng] 00:24:04,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79124399 - End of configuration. [testng] [2024-11-08 00:24:05,204] [pool-1-thread-12] Initializing /data/venu/Kontrolle0016.lim: [testng] 00:24:05,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:24:05,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:05,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_00-24-05.log] [testng] 00:24:05,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e885835 - End of configuration. [testng] [2024-11-08 00:24:05,478] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:24:05,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:24:05,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:05,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_00-24-05.log] [testng] 00:24:05,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@559492d1 - End of configuration. [testng] [2024-11-08 00:24:05,767] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim: [testng] 00:24:05,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:24:05,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:05,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_00-24-05.log] [testng] 00:24:05,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c634d8 - End of configuration. [testng] [2024-11-08 00:24:06,064] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim: [testng] 00:24:06,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:24:06,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:06,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_00-24-06.log] [testng] 00:24:06,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6db5885e - End of configuration. [testng] [2024-11-08 00:24:06,341] [pool-1-thread-8] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:24:06,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:24:06,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:06,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_00-24-06.log] [testng] 00:24:06,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1098245 - End of configuration. [testng] [2024-11-08 00:24:06,612] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:24:06,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:24:06,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:06,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_00-24-06.log] [testng] 00:24:06,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d06228 - End of configuration. [testng] [2024-11-08 00:24:06,896] [pool-1-thread-6] Initializing /data/venu/Kontrolle0008.lim: [testng] 00:24:06,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:24:06,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:06,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_00-24-06.log] [testng] 00:24:06,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45b9f091 - End of configuration. [testng] [2024-11-08 00:24:07,193] [pool-1-thread-5] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:24:07,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:24:07,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:07,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_00-24-07.log] [testng] 00:24:07,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@264aa803 - End of configuration. [testng] [2024-11-08 00:24:07,475] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim: [testng] 00:24:07,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:24:07,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:07,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_00-24-07.log] [testng] 00:24:07,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e77647 - End of configuration. [testng] [2024-11-08 00:24:07,755] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:24:07,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:24:07,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:07,756 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_00-24-07.log] [testng] 00:24:07,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11cf9802 - End of configuration. [testng] [2024-11-08 00:24:08,159] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:24:08,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:24:08,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:08,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_00-24-08.log] [testng] 00:24:08,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cf887b7 - End of configuration. [testng] [2024-11-08 00:24:14,737] [pool-1-thread-1] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-11-08 00:24:15,035] [pool-1-thread-9] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-11-08 00:24:15,404] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-11-08 00:24:15,677] [pool-1-thread-11] Initializing /data/venu/Kontrolle0021.lim: [testng] [2024-11-08 00:24:15,954] [pool-1-thread-2] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-11-08 00:24:16,233] [pool-1-thread-4] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-11-08 00:24:16,514] [pool-1-thread-5] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-11-08 00:24:16,812] [pool-1-thread-3] Initializing /data/venu/Kontrolle0012.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 27 seconds Finished: SUCCESS