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Started by upstream project "BIOFORMATS-test-repo" build number 249 originally caused by: Started by upstream project "Trigger" build number 273 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins3281892067185348146.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39190_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:43:30,453 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:43:30,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:43:30,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:30,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:30,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:43:30,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:43:30,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:43:30,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:30,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:30,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:43:30,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:43:30,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:43:30,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:43:30,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:43:30,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:43:30,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:43:30,709 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:43:30,709 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:43:30,709 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:43:30,709 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:43:30,709 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:43:30,710 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:43:30,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 253 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-08 00:43:30,720] [main] java.version = 1.8.0_342 [testng] 00:43:30,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:43:30,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:30,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_00-43-30.log] [testng] 00:43:30,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-08 00:43:30,776] [main] testng.directory = /data [testng] [2024-11-08 00:43:30,776] [main] testng.configDirectory = /config [testng] [2024-11-08 00:43:30,788] [main] testng.multiplier = 1.0 [testng] [2024-11-08 00:43:30,788] [main] testng.in-memory = false [testng] [2024-11-08 00:43:30,788] [main] testng.allow-missing = false [testng] [2024-11-08 00:43:30,788] [main] user.language = en [testng] [2024-11-08 00:43:30,788] [main] user.country = ${user.country} [testng] [2024-11-08 00:43:30,788] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-08 00:43:31,709] [main] ---------------------------------------- [testng] [2024-11-08 00:43:31,709] [main] Total files: 21 [testng] [2024-11-08 00:43:31,709] [main] Scan time: 0.921 s (43 ms/file) [testng] [2024-11-08 00:43:31,709] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-08 00:43:40,366] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA: [testng] 00:43:40,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:43:40,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:40,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_00-43-40.log] [testng] 00:43:40,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e85899 - End of configuration. [testng] [2024-11-08 00:43:40,865] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA: [testng] 00:43:40,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:43:40,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:40,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_00-43-40.log] [testng] 00:43:40,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2da0b9ac - End of configuration. [testng] [2024-11-08 00:43:41,243] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 00:43:41,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:43:41,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:41,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_00-43-41.log] [testng] 00:43:41,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@761869d1 - End of configuration. [testng] [2024-11-08 00:43:41,613] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 00:43:41,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:43:41,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:41,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_00-43-41.log] [testng] 00:43:41,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@791b6501 - End of configuration. [testng] [2024-11-08 00:43:41,905] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:43:41,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:43:41,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:41,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_00-43-41.log] [testng] 00:43:41,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d4acaa4 - End of configuration. [testng] [2024-11-08 00:43:42,210] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:43:42,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:43:42,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:42,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_00-43-42.log] [testng] 00:43:42,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@390d4af7 - End of configuration. [testng] [2024-11-08 00:43:42,526] [pool-1-thread-7] Initializing /data/samples/CTC16.TGA: [testng] 00:43:42,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:43:42,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:42,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_00-43-42.log] [testng] 00:43:42,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26f9cda2 - End of configuration. [testng] [2024-11-08 00:43:42,848] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] 00:43:42,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:43:42,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:42,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_00-43-42.log] [testng] 00:43:42,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e1ba1ff - End of configuration. [testng] [2024-11-08 00:43:43,151] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: [testng] 00:43:43,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:43:43,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:43,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_00-43-43.log] [testng] 00:43:43,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b752e4 - End of configuration. [testng] [2024-11-08 00:43:43,443] [pool-1-thread-4] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:43:43,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:43:43,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:43,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_00-43-43.log] [testng] 00:43:43,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@454507c4 - End of configuration. [testng] [2024-11-08 00:43:43,753] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] 00:43:43,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:43:43,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:43,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_00-43-43.log] [testng] 00:43:43,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d7e5e74 - End of configuration. [testng] [2024-11-08 00:43:44,053] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] 00:43:44,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:43:44,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:44,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_00-43-44.log] [testng] 00:43:44,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46fcde9d - End of configuration. [testng] [2024-11-08 00:43:49,893] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: [testng] [2024-11-08 00:43:50,395] [pool-1-thread-12] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-11-08 00:43:50,881] [pool-1-thread-9] Initializing /data/samples/CBW8.TGA: [testng] [2024-11-08 00:43:51,423] [pool-1-thread-4] Initializing /data/samples/XING_B32.TGA: [testng] [2024-11-08 00:43:52,149] [pool-1-thread-8] Initializing /data/samples/UTC24.TGA: [testng] [2024-11-08 00:43:52,502] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA: [testng] [2024-11-08 00:43:52,741] [pool-1-thread-5] Initializing /data/samples/UBW8.TGA: [testng] [2024-11-08 00:43:53,086] [pool-1-thread-1] Initializing /data/samples/XING_T32.TGA: [testng] [2024-11-08 00:43:53,567] [pool-1-thread-10] Initializing /data/samples/UTC16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 seconds Finished: SUCCESS