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Started by upstream project "BIOFORMATS-test-repo" build number 249 originally caused by: Started by upstream project "Trigger" build number 273 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9535249655919216175.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39194_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:50:35,616 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:50:35,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:50:35,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:50:35,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:50:35,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:50:35,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:50:35,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:50:35,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:50:35,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:50:35,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:50:35,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:50:35,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:50:35,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:50:35,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:50:35,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:50:35,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:50:35,913 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:50:35,914 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:50:35,914 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:50:35,915 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:50:35,915 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:50:35,916 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:50:35,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 295 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-08 00:50:35,927] [main] java.version = 1.8.0_342 [testng] 00:50:35,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:50:35,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:35,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_00-50-35.log] [testng] 00:50:35,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-08 00:50:35,982] [main] testng.directory = /data [testng] [2024-11-08 00:50:35,982] [main] testng.configDirectory = /config [testng] [2024-11-08 00:50:35,995] [main] testng.multiplier = 1.0 [testng] [2024-11-08 00:50:35,995] [main] testng.in-memory = false [testng] [2024-11-08 00:50:35,995] [main] testng.allow-missing = false [testng] [2024-11-08 00:50:35,995] [main] user.language = en [testng] [2024-11-08 00:50:35,995] [main] user.country = ${user.country} [testng] [2024-11-08 00:50:35,995] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-08 00:51:06,269] [main] ---------------------------------------- [testng] [2024-11-08 00:51:06,269] [main] Total files: 259 [testng] [2024-11-08 00:51:06,269] [main] Scan time: 30.274 s (116 ms/file) [testng] [2024-11-08 00:51:06,269] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-08 01:00:40,064] [pool-1-thread-1] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 01:00:40,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:00:40,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:40,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_01-00-40.log] [testng] 01:00:40,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9727f5d - End of configuration. [testng] [2024-11-08 01:00:40,521] [pool-1-thread-12] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] 01:00:40,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:00:40,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:40,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_01-00-40.log] [testng] 01:00:40,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22298285 - End of configuration. [testng] [2024-11-08 01:00:40,649] [pool-1-thread-11] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] 01:00:40,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:00:40,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:40,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_01-00-40.log] [testng] 01:00:40,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23c2b972 - End of configuration. [testng] [2024-11-08 01:00:41,807] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] 01:00:41,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:00:41,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:41,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_01-00-41.log] [testng] 01:00:41,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41c60d3a - End of configuration. [testng] [2024-11-08 01:00:42,107] [pool-1-thread-9] Initializing /data/pedro/plv-test.oib: [testng] 01:00:42,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:00:42,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:42,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_01-00-42.log] [testng] 01:00:42,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1353d686 - End of configuration. [testng] [2024-11-08 01:00:42,220] [pool-1-thread-8] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] 01:00:42,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:00:42,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:42,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_01-00-42.log] [testng] 01:00:42,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2615d504 - End of configuration. [testng] [2024-11-08 01:00:42,383] [pool-1-thread-7] Initializing /data/molly/11OCT4.OIF: [testng] 01:00:42,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:00:42,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:42,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_01-00-42.log] [testng] 01:00:42,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46f87f2c - End of configuration. [testng] [2024-11-08 01:00:44,283] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] 01:00:44,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:00:44,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:44,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_01-00-44.log] [testng] 01:00:44,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7547c4d1 - End of configuration. [testng] [2024-11-08 01:00:44,488] [pool-1-thread-5] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 01:00:44,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:00:44,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:44,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_01-00-44.log] [testng] 01:00:44,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5db67bcf - End of configuration. [testng] [2024-11-08 01:00:44,604] [pool-1-thread-4] Initializing /data/molly/11OCT5.OIF: [testng] 01:00:44,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:00:44,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:44,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_01-00-44.log] [testng] 01:00:44,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30815058 - End of configuration. [testng] [2024-11-08 01:00:46,548] [pool-1-thread-3] Initializing /data/glen/Null file/test no change.oif: [testng] 01:00:46,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:00:46,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:46,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_01-00-46.log] [testng] 01:00:46,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@300afe11 - End of configuration. [testng] [2024-11-08 01:00:46,734] [pool-1-thread-2] Initializing /data/sten/01.oib: [testng] 01:00:46,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:00:46,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:46,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_01-00-46.log] [testng] 01:00:46,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16758561 - End of configuration. [testng] [2024-11-08 01:00:50,776] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-08 01:00:50,895] [pool-1-thread-8] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-08 01:00:51,302] [pool-1-thread-2] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-08 01:00:52,666] [pool-1-thread-9] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-08 01:00:55,882] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-08 01:00:56,380] [pool-1-thread-10] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-08 01:00:57,367] [pool-1-thread-12] Initializing /data/michael/CELL3.oib: [testng] [2024-11-08 01:00:58,743] [pool-1-thread-10] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-08 01:01:00,089] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-08 01:01:01,184] [pool-1-thread-12] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-08 01:01:02,909] [pool-1-thread-10] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-08 01:01:36,929] [pool-1-thread-6] Initializing /data/glen/simulstack.oib: [testng] [2024-11-08 01:01:37,632] [pool-1-thread-3] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-08 01:01:48,182] [pool-1-thread-5] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-08 01:01:48,766] [pool-1-thread-12] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-08 01:01:52,894] [pool-1-thread-6] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-08 01:01:53,337] [pool-1-thread-8] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-08 01:01:54,248] [pool-1-thread-12] Initializing /data/monica/Image0056.oif: [testng] [2024-11-08 01:01:54,985] [pool-1-thread-5] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-08 01:01:57,511] [pool-1-thread-6] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-08 01:01:59,116] [pool-1-thread-5] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-08 01:02:04,523] [pool-1-thread-8] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-08 01:02:07,424] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-08 01:02:21,404] [pool-1-thread-8] Initializing /data/glen/111407.oif: [testng] [2024-11-08 01:02:24,923] [pool-1-thread-6] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-08 01:02:38,958] [pool-1-thread-5] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-08 01:02:46,373] [pool-1-thread-12] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-08 01:03:32,923] [pool-1-thread-5] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-08 01:03:38,570] [pool-1-thread-5] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-08 01:03:43,600] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-08 01:03:53,240] [pool-1-thread-5] Initializing /data/glen/Image0002.oif: [testng] [2024-11-08 01:09:51,677] [pool-1-thread-2] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-08 01:09:58,643] [pool-1-thread-2] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-08 01:10:07,122] [pool-1-thread-2] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-08 01:12:48,647] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-08 01:12:56,963] [pool-1-thread-1] Initializing /data/marc/V0606J.oib: [testng] [2024-11-08 01:13:16,416] [pool-1-thread-1] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-11-08 01:14:13,300] [pool-1-thread-12] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-08 01:14:15,744] [pool-1-thread-12] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-08 01:14:25,608] [pool-1-thread-12] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-08 01:14:34,811] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-08 01:14:41,806] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-08 01:14:44,440] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-08 01:14:52,699] [pool-1-thread-1] Initializing /data/johannes/step2.bmp: [testng] [2024-11-08 01:14:54,286] [pool-1-thread-12] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-08 01:14:56,328] [pool-1-thread-1] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-08 01:15:02,746] [pool-1-thread-12] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-08 01:15:09,426] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-08 01:16:51,560] [pool-1-thread-2] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-08 01:16:58,036] [pool-1-thread-2] Initializing /data/david/Image0016.oif: [testng] [2024-11-08 01:18:58,130] [pool-1-thread-2] Initializing /data/molly/11OCT2.OIF: [testng] [2024-11-08 01:19:40,681] [pool-1-thread-1] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-08 01:19:56,024] [pool-1-thread-12] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-08 01:20:21,138] [pool-1-thread-12] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-08 01:20:56,251] [pool-1-thread-12] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-08 01:21:03,187] [pool-1-thread-12] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-08 01:21:10,967] [pool-1-thread-12] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-08 01:21:19,426] [pool-1-thread-12] Initializing /data/karl/Image0009.oib: [testng] [2024-11-08 01:21:25,981] [pool-1-thread-12] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-08 01:21:33,439] [pool-1-thread-12] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-08 01:22:06,998] [pool-1-thread-8] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-08 01:22:12,735] [pool-1-thread-8] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-08 01:22:20,080] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-08 01:22:25,556] [pool-1-thread-8] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-08 01:22:59,914] [pool-1-thread-1] Initializing /data/aryeh/1h.oib: [testng] [2024-11-08 01:23:10,073] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-08 01:23:16,204] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-08 01:23:22,646] [pool-1-thread-1] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-08 01:23:29,223] [pool-1-thread-1] Initializing /data/brian/FLIP.oib: [testng] [2024-11-08 01:23:39,383] [pool-1-thread-1] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-08 01:23:46,419] [pool-1-thread-1] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-08 01:23:52,356] [pool-1-thread-1] Initializing /data/simon/never_worked.oib: [testng] [2024-11-08 01:23:58,728] [pool-1-thread-1] Initializing /data/johannes/step1.bmp: [testng] [2024-11-08 01:24:02,149] [pool-1-thread-1] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-08 01:24:10,977] [pool-1-thread-1] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-08 01:24:18,503] [pool-1-thread-1] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-08 01:24:28,498] [pool-1-thread-1] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-08 01:25:27,033] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-08 01:25:28,262] [pool-1-thread-7] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-08 01:25:34,385] [pool-1-thread-4] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-08 01:25:37,591] [pool-1-thread-7] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-08 01:25:45,127] [pool-1-thread-4] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-08 01:25:47,180] [pool-1-thread-7] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-08 01:25:55,956] [pool-1-thread-7] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-08 01:26:04,591] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-08 01:26:14,028] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-08 01:26:23,889] [pool-1-thread-7] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-08 01:27:11,839] [pool-1-thread-7] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-08 01:30:04,993] [pool-1-thread-4] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-08 01:30:17,257] [pool-1-thread-4] Initializing /data/david/Image0016.oib: [testng] [2024-11-08 01:30:26,343] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-08 01:30:38,301] [pool-1-thread-4] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-08 01:31:16,222] [pool-1-thread-5] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-08 01:31:28,020] [pool-1-thread-5] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-08 01:32:15,045] [pool-1-thread-6] Initializing /data/allan/62909#1.oib: [testng] [2024-11-08 01:32:22,494] [pool-1-thread-6] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-08 01:35:10,949] [pool-1-thread-3] Initializing /data/glen/simulstack.oif: [testng] [2024-11-08 01:36:11,946] [pool-1-thread-9] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-08 01:36:22,441] [pool-1-thread-9] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-08 01:39:55,306] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-08 01:40:02,073] [pool-1-thread-11] Initializing /data/christian/20min.oif: [testng] [2024-11-08 01:40:26,482] [pool-1-thread-11] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-08 01:40:33,460] [pool-1-thread-11] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-08 01:40:59,762] [pool-1-thread-11] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-08 01:42:24,918] [pool-1-thread-11] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-08 01:46:12,465] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-08 01:46:19,193] [pool-1-thread-5] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-08 01:46:24,380] [pool-1-thread-5] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-08 01:46:30,343] [pool-1-thread-5] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-08 01:46:34,353] [pool-1-thread-5] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-08 01:46:42,593] [pool-1-thread-5] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-08 01:46:50,038] [pool-1-thread-5] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-08 01:54:11,090] [pool-1-thread-3] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-08 01:55:03,405] [pool-1-thread-3] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-08 01:55:09,625] [pool-1-thread-3] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-08 01:55:49,457] [pool-1-thread-1] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-08 01:55:56,559] [pool-1-thread-1] Initializing /data/johannes/step4.bmp: [testng] [2024-11-08 01:55:59,660] [pool-1-thread-1] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-08 01:56:02,641] [pool-1-thread-1] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-08 01:56:10,586] [pool-1-thread-1] Initializing /data/johannes/step3.bmp: [testng] [2024-11-08 01:56:13,449] [pool-1-thread-1] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-08 01:56:19,403] [pool-1-thread-1] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-08 01:56:33,857] [pool-1-thread-1] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-08 01:56:41,974] [pool-1-thread-12] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-08 01:56:43,059] [pool-1-thread-4] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-08 01:57:24,012] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-08 01:57:29,604] [pool-1-thread-12] Initializing /data/jae/Image0001.oib: [testng] [2024-11-08 01:57:32,293] [pool-1-thread-1] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-08 01:57:40,448] [pool-1-thread-12] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-08 01:58:48,239] [pool-1-thread-1] Initializing /data/marc/V0606L.oib: [testng] [2024-11-08 01:59:06,614] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-08 01:59:15,127] [pool-1-thread-1] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] 02:38:34,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:38:34,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:34,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_02-38-34.log] [testng] 02:38:34,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7acbfd9d - End of configuration. [testng] 03:21:42,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:21:42,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:21:42,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_03-21-42.log] [testng] 03:21:42,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65f553b0 - End of configuration. [testng] 03:30:30,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:30:30,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:30:30,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_03-30-30.log] [testng] 03:30:30,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ececd11 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 159 minutes 59 seconds Finished: SUCCESS