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Started by upstream project "BIOFORMATS-test-repo" build number 30 originally caused by: Started by upstream project "Trigger" build number 33 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins9480097721443479542.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_3920_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:20:18,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:18,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:20:18,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:18,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:18,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:18,857 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:18,857 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:18,857 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:18,858 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:18,858 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:18,858 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:18,859 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:19,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:19,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:19,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:19,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:19,118 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:19,119 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:19,119 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:19,119 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:19,120 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:20:19,121 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:20:19,121 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-11 01:20:19,133] [main] java.version = 21 [testng] 01:20:19,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:19,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:19,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-11_01-20-19.log] [testng] 01:20:19,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-04-11 01:20:19,184] [main] testng.directory = /data [testng] [2024-04-11 01:20:19,184] [main] testng.configDirectory = /config [testng] [2024-04-11 01:20:19,193] [main] testng.multiplier = 1.0 [testng] [2024-04-11 01:20:19,194] [main] testng.in-memory = false [testng] [2024-04-11 01:20:19,194] [main] testng.allow-missing = false [testng] [2024-04-11 01:20:19,194] [main] user.language = en [testng] [2024-04-11 01:20:19,194] [main] user.country = ${user.country} [testng] [2024-04-11 01:20:19,194] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-11 01:20:33,531] [main] ---------------------------------------- [testng] [2024-04-11 01:20:33,531] [main] Total files: 4424 [testng] [2024-04-11 01:20:33,531] [main] Scan time: 14.337 s (3 ms/file) [testng] [2024-04-11 01:20:33,532] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-11 01:22:25,485] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] 01:22:25,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:25,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-11_01-22-25.log] [testng] 01:22:25,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5990df76 - End of configuration. [testng] [2024-04-11 01:22:25,517] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] 01:22:25,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:25,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-11_01-22-25.log] [testng] 01:22:25,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@126e8b02 - End of configuration. [testng] [2024-04-11 01:22:25,552] [pool-1-thread-11] Initializing /data/public/libtiff/quad-jpeg.tif: [testng] 01:22:25,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:25,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-11_01-22-25.log] [testng] 01:22:25,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e5733a1 - End of configuration. [testng] [2024-04-11 01:22:25,581] [pool-1-thread-10] Initializing /data/ascb/CYT-55_HowellGolgiRibbonOutlined_4800.tif: [testng] 01:22:25,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:25,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-11_01-22-25.log] [testng] 01:22:25,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62b3f11a - End of configuration. [testng] [2024-04-11 01:22:25,656] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] 01:22:25,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:25,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-11_01-22-25.log] [testng] 01:22:25,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24088d66 - End of configuration. [testng] [2024-04-11 01:22:25,680] [pool-1-thread-8] Initializing /data/misc/mri.eps: [testng] 01:22:25,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:25,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-11_01-22-25.log] [testng] 01:22:25,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@301ed043 - End of configuration. [testng] [2024-04-11 01:22:25,695] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] 01:22:25,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:25,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-11_01-22-25.log] [testng] 01:22:25,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c16dba9 - End of configuration. [testng] [2024-04-11 01:22:25,726] [pool-1-thread-6] Initializing /data/josiah/cell-Z27.C1.tiff: [testng] 01:22:25,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:25,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,727 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-11_01-22-25.log] [testng] 01:22:25,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a13239d - End of configuration. [testng] [2024-04-11 01:22:25,765] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z023.tif: [testng] 01:22:25,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:25,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-11_01-22-25.log] [testng] 01:22:25,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bc37038 - End of configuration. [testng] [2024-04-11 01:22:25,792] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] 01:22:25,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:25,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-11_01-22-25.log] [testng] 01:22:25,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@437f807a - End of configuration. [testng] [2024-04-11 01:22:25,818] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z036.tif: [testng] 01:22:25,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:25,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-11_01-22-25.log] [testng] 01:22:25,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@334ca40c - End of configuration. [testng] [2024-04-11 01:22:25,846] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z059.tif: [testng] 01:22:25,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:25,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:25,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-11_01-22-25.log] [testng] 01:22:25,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@382a10d5 - End of configuration. [testng] [2024-04-11 01:22:27,584] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0222.TIF: [testng] [2024-04-11 01:22:27,634] [pool-1-thread-5] Initializing /data/curtis/map/jumps-over: [testng] [2024-04-11 01:22:27,655] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z062.tif: [testng] [2024-04-11 01:22:27,675] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z015.tif: [testng] [2024-04-11 01:22:27,696] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-04-11 01:22:27,716] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP7.tiff: [testng] [2024-04-11 01:22:27,791] [pool-1-thread-11] Initializing /data/samples/melissa/strike-uncompressed.tiff: [testng] [2024-04-11 01:22:27,817] [pool-1-thread-8] Initializing /data/josiah/cell-Z16.C0.tiff: [testng] [2024-04-11 01:22:27,847] [pool-1-thread-2] Initializing /data/ascb/FND-28a_PaladeHepatocyteLabeled_4800.tif: [testng] [2024-04-11 01:22:28,997] [pool-1-thread-6] Initializing /data/imagesc-82872/SG11410002_253174651388_S001.tif: [testng] [2024-04-11 01:22:29,189] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0253.TIF: [testng] [2024-04-11 01:22:29,952] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-04-11 01:22:30,005] [pool-1-thread-5] Initializing /data/damian/06m.tiff: [testng] [2024-04-11 01:22:30,065] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0211.TIF: [testng] [2024-04-11 01:22:30,152] [pool-1-thread-7] Initializing /data/lee/r03c03f01p01rc2-ch1sk1fk1fl1.tiff: [testng] [2024-04-11 01:22:30,327] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-04-11 01:22:30,574] [pool-1-thread-8] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-04-11 01:22:30,726] [pool-1-thread-3] Initializing /data/damian/21m.tiff: [testng] [2024-04-11 01:22:30,757] [pool-1-thread-12] Initializing /data/samples/cielab/Ski_TC8-03_sRGB.tif: [testng] [2024-04-11 01:22:30,806] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z031.tif: [testng] [2024-04-11 01:22:31,004] [pool-1-thread-1] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-04-11 01:22:31,151] [pool-1-thread-5] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-04-11 01:22:31,625] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0202.TIF: [testng] [2024-04-11 01:22:31,926] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-04-11 01:22:32,117] [pool-1-thread-8] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-04-11 01:22:32,218] [pool-1-thread-3] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-04-11 01:22:32,367] [pool-1-thread-4] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-04-11 01:22:32,622] [pool-1-thread-1] Initializing /data/damian/33m.tiff: [testng] [2024-04-11 01:22:33,093] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z052.tif: [testng] [2024-04-11 01:22:33,126] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z059.tif: [testng] [2024-04-11 01:22:33,276] [pool-1-thread-1] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] [2024-04-11 01:22:33,407] [pool-1-thread-10] Initializing /data/brian/CurrentSystems.tiff: [testng] [2024-04-11 01:22:33,470] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z014.tif: [testng] [2024-04-11 01:22:33,491] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-04-11 01:22:33,787] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs007.TIF: [testng] [2024-04-11 01:22:33,829] [pool-1-thread-7] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-04-11 01:22:33,884] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [2024-04-11 01:22:33,930] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z030.tif: [testng] [2024-04-11 01:22:34,164] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z007.tif: [testng] [2024-04-11 01:22:34,547] [pool-1-thread-4] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-04-11 01:22:34,590] [pool-1-thread-9] Initializing /data/public/libtiff/dscf0013.tif: [testng] [2024-04-11 01:22:35,115] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-04-11 01:22:35,185] [pool-1-thread-3] Initializing /data/julien/baldindq-OVA.TIF: [testng] [2024-04-11 01:22:35,234] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z025.tif: [testng] [2024-04-11 01:22:35,554] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0227.TIF: [testng] [2024-04-11 01:22:35,890] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z029.tif: [testng] [2024-04-11 01:22:35,969] [pool-1-thread-9] Initializing /data/kevino/_BF_00000.tif: [testng] [2024-04-11 01:22:36,198] 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[testng] [2024-04-11 01:23:59,982] [pool-1-thread-2] Initializing /data/misc/mri-new.mov: [testng] [2024-04-11 01:24:00,129] [pool-1-thread-7] Initializing /data/damian/24m.tiff: [testng] [2024-04-11 01:24:00,282] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-04-11 01:24:00,444] [pool-1-thread-12] Initializing /data/carolyn/tumor_1.tif: [testng] [2024-04-11 01:24:00,523] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z039.tif: [testng] [2024-04-11 01:24:00,569] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0235.TIF: [testng] [2024-04-11 01:24:00,647] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z024.tif: [testng] [2024-04-11 01:24:00,947] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z008.tif: [testng] [2024-04-11 01:24:01,051] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] [2024-04-11 01:24:01,077] [pool-1-thread-9] Initializing 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[pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z011.tif: [testng] [2024-04-11 01:24:25,472] [pool-1-thread-1] Initializing /data/public/libtiff/quad-tile.tif: [testng] [2024-04-11 01:24:25,692] [pool-1-thread-7] Initializing /data/josiah/cell-Z13.C1.tiff: [testng] [2024-04-11 01:24:25,924] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z032.tif: [testng] [2024-04-11 01:24:25,999] [pool-1-thread-5] Initializing /data/lzw/test.tif: [testng] [2024-04-11 01:24:26,266] [pool-1-thread-1] Initializing /data/josiah/cell-Z31.C1.tiff: [testng] [2024-04-11 01:24:26,388] [pool-1-thread-6] Initializing /data/ascb/CYT-31_FriendOsmium_4800.tif: [testng] [2024-04-11 01:24:26,557] [pool-1-thread-7] Initializing /data/julien/AVECCHRO.TIF: [testng] [2024-04-11 01:24:26,754] [pool-1-thread-8] Initializing /data/jae/25Jan10_MDCK_2R_3Dstack_60x_1.tif: [testng] [2024-04-11 01:24:26,921] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0249.TIF: [testng] [2024-04-11 01:24:27,363] [pool-1-thread-1] Initializing /data/qa-5004/ID4118_21_uncuff_10x_HE.tif: [testng] [2024-04-11 01:24:27,574] [pool-1-thread-7] Initializing /data/carolyn/tumor_3.tif: [testng] [2024-04-11 01:24:28,717] [pool-1-thread-5] Initializing /data/ascb/FND-12_PorterFranziniSarcoplasmic_4800.tif: [testng] [2024-04-11 01:24:28,834] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z015.tif: [testng] [2024-04-11 01:24:29,235] [pool-1-thread-7] Initializing /data/julien/Genevievevanille.TIF: [testng] [2024-04-11 01:24:29,636] [pool-1-thread-8] Initializing /data/bgriffen/Image_XY01_00557_Z001_CH1.tif: [testng] [2024-04-11 01:24:29,745] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] [2024-04-11 01:24:30,413] [pool-1-thread-7] Initializing /data/matt/CR20070824-002_6202483715-06 003_0_P23_0Green.tif: [testng] [2024-04-11 01:24:31,468] [pool-1-thread-12] Initializing /data/ascb/CYT-50_FriendSecretoryPairA_4800.tif: [testng] [2024-04-11 01:24:32,196] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z008.tif: [testng] [2024-04-11 01:24:32,392] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0223.TIF: [testng] [2024-04-11 01:24:32,637] [pool-1-thread-7] Initializing /data/ascb/FND-26a_PaladeGlycogenLabeled_4800.tif: [testng] [2024-04-11 01:24:34,321] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z001.tif: [testng] [2024-04-11 01:24:34,496] [pool-1-thread-6] Initializing /data/chris-wood/15ms full low light.tif: [testng] [2024-04-11 01:24:34,576] [pool-1-thread-3] Initializing /data/wayne/Rockies-grayscale.tif: [testng] [2024-04-11 01:24:34,624] [pool-1-thread-4] Initializing /data/michael/MFISH.tiff: [testng] [2024-04-11 01:24:34,909] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z063.tif: [testng] [2024-04-11 01:24:35,106] [pool-1-thread-11] Initializing /data/ascb/CYT-49_FriendSecretoryPair_4800.tif: [testng] [2024-04-11 01:24:35,331] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z063.tif: [testng] [2024-04-11 01:24:35,448] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z057.tif: [testng] [2024-04-11 01:24:35,579] [pool-1-thread-8] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2024-04-11 01:24:35,705] [pool-1-thread-4] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-04-11 01:24:36,046] [pool-1-thread-3] Initializing /data/josh/stack.tif: [testng] [2024-04-11 01:24:36,182] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z004.tif: [testng] [2024-04-11 01:24:36,446] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0251.TIF: [testng] [2024-04-11 01:24:36,761] [pool-1-thread-2] Initializing /data/curtis/map/the-quick: [testng] [2024-04-11 01:24:36,779] [pool-1-thread-4] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-04-11 01:24:37,353] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z010.tif: [testng] [2024-04-11 01:24:37,393] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs002.TIF: [testng] [2024-04-11 01:24:37,759] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-04-11 01:24:37,970] [pool-1-thread-3] Initializing /data/lzw/DendriteForks.tif: [testng] [2024-04-11 01:24:38,037] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z037.tif: [testng] [2024-04-11 01:24:38,058] [pool-1-thread-2] Initializing /data/qa-7589/CalGrid2.tif: [testng] [2024-04-11 01:24:38,097] [pool-1-thread-6] Initializing /data/tamjid/Image_843.tif: [testng] [2024-04-11 01:24:38,253] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z016.tif: [testng] [2024-04-11 01:24:38,307] [pool-1-thread-10] Initializing /data/curtis/images24.tiff: [testng] [2024-04-11 01:24:38,445] [pool-1-thread-8] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-04-11 01:24:38,703] [pool-1-thread-2] Initializing 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01:24:40,528] [pool-1-thread-2] Initializing /data/jeff/erdas_spnad83.tif: [testng] [2024-04-11 01:24:40,956] [pool-1-thread-3] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-04-11 01:24:41,207] [pool-1-thread-2] Initializing /data/curtis/test2.tiff: [testng] [2024-04-11 01:24:41,416] [pool-1-thread-1] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-04-11 01:24:41,493] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-04-11 01:24:41,753] [pool-1-thread-2] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-04-11 01:24:41,842] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2024-04-11 01:24:41,864] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-04-11 01:24:42,202] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-04-11 01:24:42,401] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z011.tif: [testng] [2024-04-11 01:24:42,460] [pool-1-thread-3] Initializing /data/ascb/bad/CYT-76_PasolliMouse1_4800.tif: [testng] [2024-04-11 01:24:42,681] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-04-11 01:24:42,807] [pool-1-thread-5] Initializing /data/josiah/cell-Z37.C1.tiff: [testng] [2024-04-11 01:24:42,875] [pool-1-thread-1] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-04-11 01:24:42,968] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x48.tiff: [testng] [2024-04-11 01:24:43,212] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-04-11 01:24:43,454] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z028.tif: [testng] [2024-04-11 01:24:43,514] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z019.tif: [testng] [2024-04-11 01:24:43,537] [pool-1-thread-5] Initializing /data/martin/head.tif: [testng] [2024-04-11 01:24:43,995] [pool-1-thread-10] Initializing /data/ascb/CYT-2_BaintonBoylesPhagocytosisYeastB_4800.tif: [testng] [2024-04-11 01:24:44,163] [pool-1-thread-1] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-04-11 01:24:44,442] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-64.tiff: [testng] [2024-04-11 01:24:44,758] [pool-1-thread-5] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] [2024-04-11 01:24:44,915] [pool-1-thread-2] Initializing /data/josiah/cell-Z3.C1.tiff: [testng] [2024-04-11 01:24:45,279] [pool-1-thread-5] Initializing /data/josiah/cell-Z32.C0.tiff: [testng] [2024-04-11 01:24:45,334] [pool-1-thread-11] Initializing /data/jerome/e346_plt1(m)_F1-6.tif: [testng] [2024-04-11 01:24:45,396] [pool-1-thread-1] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-04-11 01:24:45,519] [pool-1-thread-2] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-04-11 01:24:46,914] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0233.TIF: [testng] [2024-04-11 01:24:47,160] [pool-1-thread-5] Initializing /data/josiah/cell-Z7.C0.tiff: [testng] [2024-04-11 01:24:47,772] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-04-11 01:24:47,786] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z053.tif: [testng] [2024-04-11 01:24:47,862] [pool-1-thread-5] Initializing /data/wayne/m51-16bit.tif: [testng] [2024-04-11 01:24:47,972] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z012.tif: [testng] [2024-04-11 01:24:48,033] [pool-1-thread-12] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-04-11 01:24:48,227] [pool-1-thread-11] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-04-11 01:24:48,295] [pool-1-thread-4] Initializing /data/bene/3d-example-stack.tif: [testng] [2024-04-11 01:24:48,538] [pool-1-thread-8] Initializing /data/damian/12m.tiff: [testng] [2024-04-11 01:24:48,687] [pool-1-thread-5] Initializing /data/public/condensation/A6.pattern2.tif: [testng] [2024-04-11 01:24:48,830] [pool-1-thread-12] Initializing /data/paulh/quickpollen4_w1_t1.tif: [testng] [2024-04-11 01:24:48,942] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z023.tif: [testng] [2024-04-11 01:24:49,207] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0256.TIF: [testng] [2024-04-11 01:24:49,291] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z005.tif: [testng] [2024-04-11 01:24:49,315] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z035.tif: [testng] [2024-04-11 01:24:49,368] [pool-1-thread-6] Initializing /data/josiah/cell-Z9.C1.tiff: [testng] [2024-04-11 01:24:49,667] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z058.tif: [testng] [2024-04-11 01:24:49,703] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2024-04-11 01:24:49,727] [pool-1-thread-8] Initializing /data/public/libtiff/caspian.tif: [testng] [2024-04-11 01:24:49,769] [pool-1-thread-12] Initializing /data/josiah/cell-Z15.C1.tiff: [testng] [2024-04-11 01:24:49,812] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z003.tif: [testng] [2024-04-11 01:24:49,892] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z058.tif: [testng] [2024-04-11 01:24:50,048] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-64.tiff: [testng] [2024-04-11 01:24:50,117] [pool-1-thread-4] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-04-11 01:24:50,723] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0213.TIF: [testng] [2024-04-11 01:24:50,924] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0206.TIF: [testng] [2024-04-11 01:24:51,009] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] [2024-04-11 01:24:51,067] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z005.tif: [testng] [2024-04-11 01:24:51,142] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-04-11 01:24:51,234] [pool-1-thread-5] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-04-11 01:24:51,474] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-04-11 01:24:51,583] [pool-1-thread-1] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-04-11 01:24:51,613] [pool-1-thread-12] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2024-04-11 01:24:51,710] [pool-1-thread-10] Initializing /data/big-images/4kx4k.tif: [testng] [2024-04-11 01:24:51,849] [pool-1-thread-11] Initializing /data/ascb/bad/FND-21_FawcettPhillipsTransverse_4800.tif: [testng] [2024-04-11 01:24:51,951] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z014.tif: [testng] [2024-04-11 01:24:51,997] [pool-1-thread-8] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-04-11 01:24:52,372] [pool-1-thread-12] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-04-11 01:24:52,466] [pool-1-thread-1] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-04-11 01:24:52,531] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z002.tif: [testng] [2024-04-11 01:24:52,603] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0224.TIF: [testng] [2024-04-11 01:24:52,992] [pool-1-thread-8] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-04-11 01:24:53,310] [pool-1-thread-1] Initializing /data/qa-4968/twocars2.tif: [testng] [2024-04-11 01:24:53,490] [pool-1-thread-5] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-04-11 01:24:53,813] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z012.tif: [testng] [2024-04-11 01:24:53,960] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z039.tif: [testng] [2024-04-11 01:24:54,002] [pool-1-thread-8] Initializing /data/josiah/cell-Z9.C0.tiff: [testng] [2024-04-11 01:24:54,111] [pool-1-thread-12] Initializing /data/chris-wood/ticket-10050/cjw_stowers.tif: [testng] [2024-04-11 01:24:54,346] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z004.tif: [testng] [2024-04-11 01:24:54,439] [pool-1-thread-5] Initializing /data/misc/mri-old.mov: [testng] [2024-04-11 01:24:54,702] [pool-1-thread-8] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-04-11 01:24:54,825] [pool-1-thread-5] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-04-11 01:24:54,867] [pool-1-thread-6] Initializing /data/josiah/cell-Z29.C1.tiff: [testng] [2024-04-11 01:24:55,471] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-04-11 01:24:55,507] [pool-1-thread-6] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2024-04-11 01:24:55,535] [pool-1-thread-8] Initializing /data/misc/wtembryo.tiff: [testng] [2024-04-11 01:24:55,580] [pool-1-thread-1] Initializing /data/julien/MarjorieCoisy1.TIF: [testng] [2024-04-11 01:24:55,792] [pool-1-thread-5] Initializing /data/wayne/northern-8bit.tif: [testng] [2024-04-11 01:24:55,961] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-04-11 01:24:56,065] [pool-1-thread-5] Initializing /data/jcb/SuppFig5D.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 1, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 5 minutes 3 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE