Started by upstream project "BIOFORMATS-test-repo" build number 249 originally caused by: Started by upstream project "Trigger" build number 273 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins11206711589135937970.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39237_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:01:58,739 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:01:58,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 02:01:58,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:01:58,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:01:58,742 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:01:58,742 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:01:58,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:01:58,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:01:58,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:01:58,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:01:58,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:01:58,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:01:58,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:01:58,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:01:58,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:01:58,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:01:59,004 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:01:59,005 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:01:59,005 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:01:59,005 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:01:59,005 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 02:01:59,006 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 02:01:59,006 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-08 02:01:59,016] [main] java.version = 1.8.0_342 [testng] 02:01:59,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:01:59,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:59,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_02-01-59.log] [testng] 02:01:59,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-08 02:01:59,071] [main] testng.directory = /data [testng] [2024-11-08 02:01:59,071] [main] testng.configDirectory = /config [testng] [2024-11-08 02:01:59,083] [main] testng.multiplier = 1.0 [testng] [2024-11-08 02:01:59,084] [main] testng.in-memory = false [testng] [2024-11-08 02:01:59,084] [main] testng.allow-missing = false [testng] [2024-11-08 02:01:59,084] [main] user.language = en [testng] [2024-11-08 02:01:59,084] [main] user.country = ${user.country} [testng] [2024-11-08 02:01:59,084] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-08 02:15:06,603] [main] ---------------------------------------- [testng] [2024-11-08 02:15:06,604] [main] Total files: 7329 [testng] [2024-11-08 02:15:06,604] [main] Scan time: 787.519 s (107 ms/file) [testng] [2024-11-08 02:15:06,604] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-08 02:29:22,824] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 02:29:22,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:29:22,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:22,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_02-29-22.log] [testng] 02:29:22,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@447bd33e - End of configuration. [testng] [2024-11-08 02:29:24,693] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 02:29:24,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:29:24,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:24,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_02-29-24.log] [testng] 02:29:24,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d86c70 - End of configuration. [testng] [2024-11-08 02:29:26,468] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 02:29:26,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:29:26,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:26,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_02-29-26.log] [testng] 02:29:26,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dab114a - End of configuration. [testng] [2024-11-08 02:29:26,740] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 02:29:26,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:29:26,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:26,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_02-29-26.log] [testng] 02:29:26,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e478003 - End of configuration. [testng] [2024-11-08 02:29:28,572] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 02:29:28,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:29:28,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:28,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_02-29-28.log] [testng] 02:29:28,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2404fb0b - End of configuration. [testng] [2024-11-08 02:29:30,215] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 02:29:30,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:29:30,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:30,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_02-29-30.log] [testng] 02:29:30,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@510e2d43 - End of configuration. [testng] [2024-11-08 02:29:32,300] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 02:29:32,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:29:32,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:32,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_02-29-32.log] [testng] 02:29:32,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66fe6c83 - End of configuration. [testng] [2024-11-08 02:29:34,320] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 02:29:34,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:29:34,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:34,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_02-29-34.log] [testng] 02:29:34,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3546e2a3 - End of configuration. [testng] [2024-11-08 02:29:36,304] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 02:29:36,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:29:36,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:36,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_02-29-36.log] [testng] 02:29:36,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d28044c - End of configuration. [testng] [2024-11-08 02:29:38,293] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 02:29:38,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:29:38,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:38,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_02-29-38.log] [testng] 02:29:38,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15a89724 - End of configuration. [testng] [2024-11-08 02:29:40,093] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 02:29:40,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:29:40,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:40,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_02-29-40.log] [testng] 02:29:40,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7182e5ea - End of configuration. [testng] [2024-11-08 02:29:49,827] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 02:29:49,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:29:49,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:49,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_02-29-49.log] [testng] 02:29:49,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62bc63f7 - End of configuration. [testng] [2024-11-08 02:29:59,244] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-11-08 02:30:23,169] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-11-08 02:30:25,308] [pool-1-thread-1] Initializing /data/josh/2101to600astk.stk: [testng] [2024-11-08 02:31:18,879] [pool-1-thread-6] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-11-08 02:31:21,307] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-08 02:31:23,501] [pool-1-thread-4] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-11-08 02:31:26,333] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-11-08 02:31:28,780] [pool-1-thread-2] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-11-08 02:31:31,089] [pool-1-thread-9] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-11-08 02:31:40,784] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-11-08 02:31:50,459] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-11-08 02:31:53,274] [pool-1-thread-12] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-11-08 02:31:56,523] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-11-08 02:31:58,909] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-11-08 02:32:03,285] [pool-1-thread-9] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-11-08 02:32:05,862] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-11-08 02:32:20,915] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-11-08 02:32:23,369] [pool-1-thread-2] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-11-08 02:32:32,442] [pool-1-thread-5] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-11-08 02:32:35,119] [pool-1-thread-7] Initializing /data/steve/Experiment2.stk: [testng] [2024-11-08 02:32:41,267] [pool-1-thread-3] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-11-08 02:32:45,233] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-11-08 02:32:48,556] [pool-1-thread-10] Used files list does not include base file [testng] [2024-11-08 02:32:52,805] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-11-08 02:32:55,381] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-11-08 02:32:57,819] [pool-1-thread-7] Used files list does not include base file [testng] [2024-11-08 02:32:57,820] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-11-08 02:33:00,961] [pool-1-thread-9] Initializing /data/cumol-test-series/23.001: [testng] [2024-11-08 02:33:06,957] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-08 02:33:14,131] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-11-08 02:33:17,715] [pool-1-thread-4] Used files list does not include base file [testng] [2024-11-08 02:33:23,745] [pool-1-thread-2] Initializing /data/thomas/test.tif: [testng] [2024-11-08 02:33:26,560] [pool-1-thread-12] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-11-08 02:33:29,157] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-11-08 02:33:32,736] [pool-1-thread-8] Used files list does not include base file [testng] [2024-11-08 02:33:39,614] [pool-1-thread-7] Initializing /data/qa-16915/m-04.tif: [testng] [2024-11-08 02:33:45,847] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-11-08 02:33:49,940] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-08 02:33:53,122] [pool-1-thread-5] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-11-08 02:34:07,365] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-11-08 02:34:10,273] [pool-1-thread-3] Used files list does not include base file [testng] [2024-11-08 02:34:10,330] [pool-1-thread-7] Initializing /data/josh/2101to400astk.stk: [testng] [2024-11-08 02:34:33,435] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-11-08 02:34:36,605] [pool-1-thread-11] Used files list does not include base file [testng] [2024-11-08 02:34:42,919] [pool-1-thread-2] Initializing /data/ascb/mt aim.tif: [testng] [2024-11-08 02:34:47,344] [pool-1-thread-9] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-11-08 02:34:57,500] [pool-1-thread-10] Initializing /data/qa-16915/m-02.tif: [testng] [2024-11-08 02:35:00,368] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] [2024-11-08 02:35:02,636] [pool-1-thread-3] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-11-08 02:35:05,113] [pool-1-thread-2] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-11-08 02:35:21,012] [pool-1-thread-9] Initializing /data/josh/2101to600f.stk: [testng] [2024-11-08 02:35:55,013] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-11-08 02:35:59,706] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-11-08 02:36:03,697] [pool-1-thread-8] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-11-08 02:36:06,346] [pool-1-thread-4] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-11-08 02:36:18,486] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-08 02:36:25,415] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-11-08 02:36:27,901] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-11-08 02:36:42,512] [pool-1-thread-10] Initializing /data/dave/Z Series.stk: [testng] [2024-11-08 02:36:49,330] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-11-08 02:36:54,583] [pool-1-thread-11] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-11-08 02:37:04,469] [pool-1-thread-10] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-11-08 02:37:07,447] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-11-08 02:37:10,770] [pool-1-thread-12] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-11-08 02:37:19,009] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-11-08 02:37:25,038] [pool-1-thread-6] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-11-08 02:37:31,267] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-11-08 02:37:37,992] [pool-1-thread-3] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-11-08 02:38:30,792] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-11-08 02:38:33,238] [pool-1-thread-3] Used files list does not include base file [testng] [2024-11-08 02:38:36,277] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-08 02:38:40,170] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-08 02:38:42,789] [pool-1-thread-12] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-11-08 02:38:45,124] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-11-08 02:38:48,284] [pool-1-thread-1] Used files list does not include base file [testng] [2024-11-08 02:38:49,835] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-11-08 02:38:55,102] [pool-1-thread-10] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-11-08 02:39:06,782] [pool-1-thread-4] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-11-08 02:39:09,162] [pool-1-thread-11] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-11-08 02:39:11,172] [pool-1-thread-10] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-11-08 02:39:14,511] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-11-08 02:39:37,399] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-08 02:39:46,455] [pool-1-thread-8] Initializing /data/josh/2101to600e.stk: [testng] [2024-11-08 02:39:56,807] [pool-1-thread-6] Initializing /data/samples/zseries.stk: [testng] [2024-11-08 02:39:59,641] [pool-1-thread-11] Initializing /data/grant/X.STK: [testng] [2024-11-08 02:40:05,320] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-11-08 02:40:07,361] [pool-1-thread-12] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-11-08 02:40:16,169] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-11-08 02:40:25,230] [pool-1-thread-9] Initializing /data/samples/10xcalib.tif: [testng] [2024-11-08 02:40:30,685] [pool-1-thread-11] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-11-08 02:40:35,293] [pool-1-thread-4] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-11-08 02:40:42,591] [pool-1-thread-9] Initializing /data/samples/diatoms3d.stk: [testng] [2024-11-08 02:40:48,329] [pool-1-thread-11] Initializing /data/david/tl4.tif: [testng] [2024-11-08 02:40:51,743] [pool-1-thread-1] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-11-08 02:40:55,560] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-11-08 02:40:58,813] [pool-1-thread-6] Initializing /data/qa-16915/m-01.tif: [testng] [2024-11-08 02:41:02,520] [pool-1-thread-9] Initializing /data/alex/Selected FITC.stk: [testng] [2024-11-08 02:41:07,405] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-11-08 02:41:09,570] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-11-08 02:41:13,222] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-11-08 02:41:15,394] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-08 02:41:19,592] [pool-1-thread-11] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-11-08 02:41:24,162] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-11-08 02:41:32,235] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-08 02:41:34,333] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-11-08 02:41:36,155] [pool-1-thread-9] Initializing /data/ascb/golgi marker.tif: [testng] [2024-11-08 02:41:43,066] [pool-1-thread-12] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-11-08 02:41:45,337] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-11-08 02:41:52,825] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-11-08 02:41:55,911] [pool-1-thread-9] Used files list does not include base file [testng] [2024-11-08 02:41:55,965] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-11-08 02:41:58,181] [pool-1-thread-5] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-11-08 02:42:01,724] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-11-08 02:42:06,382] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-11-08 02:42:12,512] [pool-1-thread-8] Initializing /data/aaron/metamorph.stk: [testng] [2024-11-08 02:42:16,862] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-11-08 02:42:18,864] [pool-1-thread-5] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-11-08 02:42:21,042] [pool-1-thread-12] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-11-08 02:42:22,941] [pool-1-thread-4] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-11-08 02:42:25,476] [pool-1-thread-3] Initializing 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Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-11-08 02:45:04,431] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-08 02:45:07,675] [pool-1-thread-5] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-11-08 02:45:28,248] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-08 02:45:40,951] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2024-11-08 02:45:56,573] [pool-1-thread-9] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-11-08 02:46:13,235] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-11-08 02:46:19,467] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-11-08 02:46:22,791] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-11-08 02:46:24,565] [pool-1-thread-11] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-11-08 02:46:33,193] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-11-08 02:46:37,122] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-11-08 02:46:39,801] [pool-1-thread-4] Used files list does not include base file [testng] [2024-11-08 02:46:43,973] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-11-08 02:46:48,899] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-11-08 02:47:01,808] [pool-1-thread-11] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-11-08 02:47:34,184] [pool-1-thread-5] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-11-08 02:47:36,399] [pool-1-thread-3] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-11-08 02:47:41,290] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-11-08 02:47:43,288] [pool-1-thread-11] Used files list does not include base file [testng] [2024-11-08 02:47:43,291] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-11-08 02:47:45,761] [pool-1-thread-6] Used files list does not include base file [testng] [2024-11-08 02:47:45,762] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-11-08 02:47:48,120] [pool-1-thread-10] Used files list does not include base file [testng] [2024-11-08 02:48:03,179] [pool-1-thread-4] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-11-08 02:48:10,504] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-11-08 02:48:18,370] [pool-1-thread-4] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-11-08 02:48:23,503] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-11-08 02:48:31,262] [pool-1-thread-4] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-11-08 02:48:42,461] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-11-08 02:48:44,528] [pool-1-thread-11] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-11-08 02:48:51,481] [pool-1-thread-8] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-11-08 02:48:57,649] [pool-1-thread-5] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-11-08 02:48:59,429] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-11-08 02:49:01,857] [pool-1-thread-11] Used files list does not include base file [testng] [2024-11-08 02:49:06,050] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-11-08 02:49:07,868] [pool-1-thread-4] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-11-08 02:49:16,853] [pool-1-thread-5] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-11-08 02:49:41,480] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-11-08 02:49:43,062] [pool-1-thread-6] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-11-08 02:49:46,048] [pool-1-thread-8] Initializing /data/jerome/deconv.STK: [testng] [2024-11-08 02:49:50,101] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-11-08 02:49:56,905] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-11-08 02:50:00,430] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-11-08 02:50:05,373] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-11-08 02:50:14,292] [pool-1-thread-8] Initializing /data/jae/RGB_s34.tif: [testng] [2024-11-08 02:50:21,526] [pool-1-thread-10] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-11-08 02:50:26,007] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-11-08 02:50:28,223] [pool-1-thread-6] Used files list does not include base file [testng] [2024-11-08 02:50:31,892] [pool-1-thread-11] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-11-08 02:50:35,202] [pool-1-thread-8] Initializing /data/steve/Experiment2.tif: [testng] [2024-11-08 02:50:46,754] [pool-1-thread-8] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-11-08 02:50:55,001] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-08 02:51:04,771] [pool-1-thread-8] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-11-08 02:51:16,014] [pool-1-thread-8] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-11-08 02:51:24,119] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-11-08 02:51:50,920] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-11-08 02:52:01,841] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-08 02:52:30,780] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-08 02:52:32,484] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-11-08 02:52:43,301] [pool-1-thread-8] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-11-08 02:52:44,954] [pool-1-thread-6] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-11-08 02:52:48,545] [pool-1-thread-11] Initializing /data/thomas/t_test2001.tif: [testng] [2024-11-08 02:52:54,833] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-11-08 02:52:57,350] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-11-08 02:53:01,816] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-11-08 02:53:08,095] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-11-08 02:53:10,529] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-11-08 02:53:13,151] [pool-1-thread-11] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-11-08 02:53:20,772] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-11-08 02:53:22,748] [pool-1-thread-8] Used files list does not include base file [testng] 05:54:26,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:54:26,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:54:26,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_05-54-26.log] [testng] 05:54:26,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66d96549 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 232 minutes 34 seconds Finished: SUCCESS