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Started by upstream project "BIOFORMATS-test-repo" build number 249 originally caused by: Started by upstream project "Trigger" build number 273 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins10243506025403520669.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39281_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:08:54,547 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:08:54,548 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:08:54,548 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:08:54,549 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:08:54,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:08:54,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:08:54,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:08:54,550 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:08:54,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:08:54,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:08:54,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:08:54,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:08:54,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:08:54,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:08:54,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:08:54,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:08:54,805 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:08:54,806 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:08:54,806 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:08:54,806 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:08:54,806 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:08:54,807 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:08:54,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-08 04:08:54,816] [main] java.version = 1.8.0_342 [testng] 04:08:54,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:08:54,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:54,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_04-08-54.log] [testng] 04:08:54,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-08 04:08:54,864] [main] testng.directory = /data [testng] [2024-11-08 04:08:54,864] [main] testng.configDirectory = /config [testng] [2024-11-08 04:08:54,875] [main] testng.multiplier = 1.0 [testng] [2024-11-08 04:08:54,875] [main] testng.in-memory = false [testng] [2024-11-08 04:08:54,876] [main] testng.allow-missing = false [testng] [2024-11-08 04:08:54,876] [main] user.language = en [testng] [2024-11-08 04:08:54,876] [main] user.country = ${user.country} [testng] [2024-11-08 04:08:54,876] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-08 04:11:40,114] [main] ---------------------------------------- [testng] [2024-11-08 04:11:40,114] [main] Total files: 15735 [testng] [2024-11-08 04:11:40,115] [main] Scan time: 165.238 s (10 ms/file) [testng] [2024-11-08 04:11:40,115] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-08 04:14:37,534] [pool-1-thread-1] Initializing /data/converted/converted/mri-stack.tif: [testng] 04:14:37,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:14:37,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:37,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_04-14-37.log] [testng] 04:14:37,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bf7fb6b - End of configuration. [testng] [2024-11-08 04:14:38,949] [pool-1-thread-12] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] 04:14:38,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:14:38,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:38,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_04-14-38.log] [testng] 04:14:38,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59b86111 - End of configuration. [testng] [2024-11-08 04:14:39,845] [pool-1-thread-11] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] 04:14:39,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:14:39,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:39,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_04-14-39.log] [testng] 04:14:39,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e3e1ade - End of configuration. [testng] [2024-11-08 04:14:40,871] [pool-1-thread-10] Initializing /data/converted/kelsey/432x342BW.tif: [testng] 04:14:40,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:14:40,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:40,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_04-14-40.log] [testng] 04:14:40,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15a36030 - End of configuration. [testng] [2024-11-08 04:14:42,101] [pool-1-thread-9] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] 04:14:42,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:14:42,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:42,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_04-14-42.log] [testng] 04:14:42,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ffd4b7a - End of configuration. [testng] [2024-11-08 04:14:43,322] [pool-1-thread-8] Initializing /data/converted/converted/2chz.tif: [testng] 04:14:43,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:14:43,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:43,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_04-14-43.log] [testng] 04:14:43,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7658b545 - End of configuration. [testng] [2024-11-08 04:14:44,407] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] 04:14:44,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:14:44,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:44,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_04-14-44.log] [testng] 04:14:44,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@775a0a4f - End of configuration. [testng] [2024-11-08 04:14:45,624] [pool-1-thread-6] Initializing /data/converted/dietmar/138.tif: [testng] 04:14:45,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:14:45,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:45,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_04-14-45.log] [testng] 04:14:45,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2598dff4 - End of configuration. [testng] [2024-11-08 04:14:46,906] [pool-1-thread-5] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 04:14:46,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:14:46,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:46,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_04-14-46.log] [testng] 04:14:46,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@488005b7 - End of configuration. [testng] [2024-11-08 04:14:49,946] [pool-1-thread-4] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] 04:14:49,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:14:49,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:49,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_04-14-49.log] [testng] 04:14:49,947 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1194e1eb - End of configuration. [testng] [2024-11-08 04:14:51,113] [pool-1-thread-3] Initializing /data/converted/kelsey/650x514BW.tif: [testng] 04:14:51,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:14:51,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:51,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_04-14-51.log] [testng] 04:14:51,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13e42047 - End of configuration. [testng] [2024-11-08 04:14:52,051] [pool-1-thread-2] Initializing /data/converted/converted/damian.tif: [testng] 04:14:52,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:14:52,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:52,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_04-14-52.log] [testng] 04:14:52,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b15d458 - End of configuration. [testng] [2024-11-08 04:15:16,183] [pool-1-thread-1] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-11-08 04:15:18,105] [pool-1-thread-10] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-11-08 04:15:19,652] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-11-08 04:15:21,531] [pool-1-thread-3] Initializing /data/scott/Slide133-04.tif: [testng] [2024-11-08 04:15:46,486] [pool-1-thread-1] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-11-08 04:15:52,534] [pool-1-thread-3] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-11-08 04:16:13,085] [pool-1-thread-12] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-11-08 04:16:25,889] [pool-1-thread-1] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-11-08 04:16:29,398] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-11-08 04:18:03,953] [pool-1-thread-8] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-11-08 04:18:34,050] [pool-1-thread-11] Initializing /data/scott/Slide133-11.tif: [testng] [2024-11-08 04:18:40,372] [pool-1-thread-4] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-11-08 04:18:45,363] [pool-1-thread-8] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-11-08 04:19:05,016] [pool-1-thread-11] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-11-08 04:19:10,824] [pool-1-thread-4] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-11-08 04:19:30,617] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-11-08 04:19:39,258] [pool-1-thread-8] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-11-08 04:19:49,342] [pool-1-thread-10] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-11-08 04:20:02,848] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-11-08 04:21:21,614] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-11-08 04:21:46,849] [pool-1-thread-9] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-11-08 04:21:55,528] [pool-1-thread-7] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-11-08 04:22:11,546] [pool-1-thread-9] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-11-08 04:22:21,967] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-11-08 04:22:25,345] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-11-08 04:23:13,308] [pool-1-thread-2] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-11-08 04:24:30,337] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] [2024-11-08 04:25:38,809] [pool-1-thread-9] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-11-08 04:26:44,565] [pool-1-thread-3] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-11-08 04:27:00,672] [pool-1-thread-11] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-11-08 04:27:57,568] [pool-1-thread-4] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-11-08 04:28:21,339] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-11-08 04:28:29,309] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-11-08 04:28:53,930] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-11-08 04:29:26,959] [pool-1-thread-6] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-11-08 04:29:56,987] [pool-1-thread-11] Initializing /data/scott/Slide133-01.tif: [testng] [2024-11-08 04:30:20,292] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-11-08 04:30:23,799] [pool-1-thread-6] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-11-08 04:30:26,034] [pool-1-thread-11] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-11-08 04:30:53,957] [pool-1-thread-6] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-11-08 04:35:52,035] [pool-1-thread-6] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-11-08 04:36:49,725] [pool-1-thread-6] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-11-08 04:40:33,802] [pool-1-thread-7] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-11-08 04:41:02,709] [pool-1-thread-5] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-11-08 04:41:26,679] [pool-1-thread-2] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-11-08 04:41:47,156] [pool-1-thread-8] Initializing /data/converted/dietmar/137.tif: [testng] [2024-11-08 04:42:01,906] [pool-1-thread-5] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-11-08 04:42:05,246] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-11-08 04:45:37,631] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-11-08 04:50:26,729] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-11-08 04:51:09,819] [pool-1-thread-9] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-11-08 04:52:28,247] [pool-1-thread-4] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-11-08 04:54:13,876] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-11-08 04:54:35,865] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-11-08 04:55:27,054] [pool-1-thread-9] Initializing /data/converted/sebastien/test.tif: [testng] [2024-11-08 04:57:49,440] [pool-1-thread-3] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-11-08 04:59:17,337] [pool-1-thread-2] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-11-08 04:59:41,932] [pool-1-thread-1] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-11-08 05:00:58,469] [pool-1-thread-3] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-11-08 05:03:13,149] [pool-1-thread-1] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-11-08 05:05:49,648] [pool-1-thread-10] Initializing /data/converted/michel/c.tif: [testng] [2024-11-08 05:05:56,644] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-11-08 05:06:46,268] [pool-1-thread-10] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-11-08 05:07:13,914] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-11-08 05:07:26,238] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-11-08 05:07:31,458] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-11-08 05:08:17,326] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-11-08 05:08:33,215] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-11-08 05:09:28,158] [pool-1-thread-2] Initializing /data/converted/michel/e.tif: [testng] [2024-11-08 05:09:36,572] [pool-1-thread-9] Initializing /data/converted/nicolas/image.tif: [testng] [2024-11-08 05:10:13,527] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-11-08 05:10:54,930] [pool-1-thread-2] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-11-08 05:11:51,194] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-11-08 05:12:13,707] [pool-1-thread-3] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-11-08 05:15:45,481] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-11-08 05:16:28,013] [pool-1-thread-3] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-11-08 05:17:50,927] [pool-1-thread-3] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-11-08 05:17:54,385] [pool-1-thread-1] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-11-08 05:17:57,037] [pool-1-thread-6] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-11-08 05:18:19,428] [pool-1-thread-4] Initializing /data/converted/michel/a.tif: [testng] [2024-11-08 05:18:35,495] [pool-1-thread-3] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-11-08 05:18:56,268] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-11-08 05:19:01,523] [pool-1-thread-1] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-11-08 05:19:06,729] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-11-08 05:19:20,729] [pool-1-thread-10] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-11-08 05:19:28,369] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-11-08 05:19:36,051] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-11-08 05:19:58,382] [pool-1-thread-7] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-11-08 05:20:11,627] [pool-1-thread-10] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-11-08 05:20:45,619] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-11-08 05:20:52,977] [pool-1-thread-10] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-11-08 05:21:27,373] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-11-08 05:22:33,620] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-11-08 05:23:30,852] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-11-08 05:29:10,184] [pool-1-thread-10] Initializing /data/converted/michel/b.tif: [testng] [2024-11-08 05:29:27,170] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-11-08 05:29:56,209] [pool-1-thread-10] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] 05:30:27,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:30:27,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:30:27,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_05-30-27.log] [testng] 05:30:27,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bf7af46 - End of configuration. [testng] [2024-11-08 05:30:31,430] [pool-1-thread-1] Initializing /data/converted/michel/d.tif: [testng] [2024-11-08 05:30:42,893] [pool-1-thread-6] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-11-08 05:30:53,042] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-11-08 05:31:18,242] [pool-1-thread-1] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-11-08 05:31:29,872] [pool-1-thread-6] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-11-08 05:31:43,271] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-11-08 05:32:01,969] [pool-1-thread-9] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-11-08 05:32:09,137] [pool-1-thread-5] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-11-08 05:32:16,428] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-11-08 05:32:28,401] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-11-08 05:32:53,461] [pool-1-thread-8] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-11-08 05:33:02,950] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif: [testng] [2024-11-08 05:33:27,173] [pool-1-thread-8] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-11-08 05:33:43,004] [pool-1-thread-4] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-11-08 05:34:19,116] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-11-08 05:34:29,091] [pool-1-thread-4] Initializing /data/converted/lior/live+cf5b.tif: [testng] 06:18:47,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:18:47,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:18:47,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_06-18-47.log] [testng] 06:18:47,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7df95a17 - End of configuration. [testng] 06:21:58,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:21:58,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:21:58,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_06-21-58.log] [testng] 06:21:58,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79059313 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 133 minutes 9 seconds Finished: SUCCESS