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Started by upstream project "BIOFORMATS-test-repo" build number 250 originally caused by: Started by upstream project "Trigger" build number 274 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins17639464837580479900.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39317_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:21:47,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:47,905 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:21:47,905 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:47,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:47,907 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:47,907 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:47,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:47,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:47,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:47,908 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:47,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:47,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:48,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:48,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:48,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:48,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:48,112 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:48,112 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:48,112 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:48,112 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:48,112 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:21:48,113 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:21:48,113 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-09 00:21:48,122] [main] java.version = 11.0.16 [testng] 00:21:48,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:48,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:48,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-09_00-21-48.log] [testng] 00:21:48,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-09 00:21:48,172] [main] testng.directory = /data [testng] [2024-11-09 00:21:48,172] [main] testng.configDirectory = /config [testng] [2024-11-09 00:21:48,181] [main] testng.multiplier = 1.0 [testng] [2024-11-09 00:21:48,183] [main] testng.in-memory = false [testng] [2024-11-09 00:21:48,183] [main] testng.allow-missing = false [testng] [2024-11-09 00:21:48,183] [main] user.language = en [testng] [2024-11-09 00:21:48,183] [main] user.country = ${user.country} [testng] [2024-11-09 00:21:48,183] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-09 00:21:49,051] [main] ---------------------------------------- [testng] [2024-11-09 00:21:49,051] [main] Total files: 36 [testng] [2024-11-09 00:21:49,051] [main] Scan time: 0.868 s (24 ms/file) [testng] [2024-11-09 00:21:49,051] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-09 00:21:50,757] [pool-1-thread-1] Initializing /data/generated/mri-stack25.pcx: [testng] 00:21:50,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:21:50,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-09_00-21-50.log] [testng] 00:21:50,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@587aaac5 - End of configuration. [testng] [2024-11-09 00:21:50,821] [pool-1-thread-12] Initializing /data/generated/mri-stack26.pcx: [testng] 00:21:50,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:21:50,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-09_00-21-50.log] [testng] 00:21:50,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45ee778e - End of configuration. [testng] [2024-11-09 00:21:50,840] [pool-1-thread-11] Initializing /data/generated/mri-stack19.pcx: [testng] 00:21:50,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:21:50,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-09_00-21-50.log] [testng] 00:21:50,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77e686a2 - End of configuration. [testng] [2024-11-09 00:21:50,862] [pool-1-thread-10] Initializing /data/generated/mri-stack6.pcx: [testng] 00:21:50,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:21:50,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-09_00-21-50.log] [testng] 00:21:50,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f805497 - End of configuration. [testng] [2024-11-09 00:21:50,878] [pool-1-thread-9] Initializing /data/generated/mri-stack9.pcx: [testng] 00:21:50,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:21:50,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-09_00-21-50.log] [testng] 00:21:50,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cc6ead1 - End of configuration. [testng] [2024-11-09 00:21:50,896] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 00:21:50,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:21:50,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-09_00-21-50.log] [testng] 00:21:50,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4afb02bd - End of configuration. [testng] [2024-11-09 00:21:50,912] [pool-1-thread-7] Initializing /data/generated/mri-stack16.pcx: [testng] 00:21:50,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:21:50,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-09_00-21-50.log] [testng] 00:21:50,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4426443 - End of configuration. [testng] [2024-11-09 00:21:50,931] [pool-1-thread-6] Initializing /data/generated/mri-stack20.pcx: [testng] 00:21:50,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:21:50,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-09_00-21-50.log] [testng] 00:21:50,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dfa1e9e - End of configuration. [testng] [2024-11-09 00:21:50,948] [pool-1-thread-5] Initializing /data/generated/mri-stack17.pcx: [testng] 00:21:50,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:21:50,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-09_00-21-50.log] [testng] 00:21:50,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fd01605 - End of configuration. [testng] [2024-11-09 00:21:50,962] [pool-1-thread-4] Initializing /data/generated/mri-stack5.pcx: [testng] 00:21:50,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:21:50,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-09_00-21-50.log] [testng] 00:21:50,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6db50563 - End of configuration. [testng] [2024-11-09 00:21:50,979] [pool-1-thread-3] Initializing /data/generated/mri-stack11.pcx: [testng] 00:21:50,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:21:50,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-09_00-21-50.log] [testng] 00:21:50,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51912cee - End of configuration. [testng] [2024-11-09 00:21:50,993] [pool-1-thread-2] Initializing /data/generated/mri-stack13.pcx: [testng] 00:21:50,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:21:50,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:50,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-09_00-21-50.log] [testng] 00:21:50,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d24778b - End of configuration. [testng] [2024-11-09 00:21:53,833] [pool-1-thread-5] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-11-09 00:21:53,848] [pool-1-thread-12] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-11-09 00:21:53,865] [pool-1-thread-6] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-11-09 00:21:53,879] [pool-1-thread-10] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-11-09 00:21:53,893] [pool-1-thread-3] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-11-09 00:21:53,903] [pool-1-thread-9] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-11-09 00:21:53,912] [pool-1-thread-7] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-11-09 00:21:53,925] [pool-1-thread-8] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-11-09 00:21:53,937] [pool-1-thread-2] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-11-09 00:21:53,946] [pool-1-thread-4] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-11-09 00:21:53,956] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-11-09 00:21:53,973] [pool-1-thread-1] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-11-09 00:21:55,080] [pool-1-thread-3] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-11-09 00:21:55,101] [pool-1-thread-2] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-11-09 00:21:55,114] [pool-1-thread-4] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-11-09 00:21:55,127] [pool-1-thread-5] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-11-09 00:21:55,145] [pool-1-thread-9] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-11-09 00:21:55,169] [pool-1-thread-12] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-11-09 00:21:55,181] [pool-1-thread-6] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-11-09 00:21:55,748] [pool-1-thread-8] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-11-09 00:21:55,825] [pool-1-thread-10] Initializing /data/generated/mri-stack4.pcx: [testng] [2024-11-09 00:21:55,877] [pool-1-thread-11] Initializing /data/generated/mri-stack23.pcx: [testng] [2024-11-09 00:21:55,919] [pool-1-thread-7] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS