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Started by upstream project "BIOFORMATS-test-repo" build number 250 originally caused by: Started by upstream project "Trigger" build number 274 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17836678159881890096.sh + '[' targa = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39354_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:44:13,092 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:44:13,094 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:44:13,094 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:44:13,095 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:44:13,096 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:44:13,096 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:44:13,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:44:13,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:44:13,097 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:44:13,097 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:44:13,098 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:44:13,098 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:44:13,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:44:13,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:44:13,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:44:13,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:44:13,292 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:44:13,293 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:44:13,293 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:44:13,293 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:44:13,293 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:44:13,294 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:44:13,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-09 00:44:13,303] [main] java.version = 11.0.16 [testng] 00:44:13,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:44:13,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:13,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-09_00-44-13.log] [testng] 00:44:13,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-09 00:44:13,361] [main] testng.directory = /data [testng] [2024-11-09 00:44:13,361] [main] testng.configDirectory = /config [testng] [2024-11-09 00:44:13,371] [main] testng.multiplier = 1.0 [testng] [2024-11-09 00:44:13,372] [main] testng.in-memory = false [testng] [2024-11-09 00:44:13,372] [main] testng.allow-missing = false [testng] [2024-11-09 00:44:13,372] [main] user.language = en [testng] [2024-11-09 00:44:13,373] [main] user.country = ${user.country} [testng] [2024-11-09 00:44:13,373] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-09 00:44:14,340] [main] ---------------------------------------- [testng] [2024-11-09 00:44:14,340] [main] Total files: 21 [testng] [2024-11-09 00:44:14,340] [main] Scan time: 0.967 s (46 ms/file) [testng] [2024-11-09 00:44:14,340] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-09 00:44:19,341] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA: [testng] 00:44:19,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:44:19,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:19,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-09_00-44-19.log] [testng] 00:44:19,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@744c94c7 - End of configuration. [testng] [2024-11-09 00:44:19,776] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:44:19,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:44:19,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:19,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-09_00-44-19.log] [testng] 00:44:19,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3639cf74 - End of configuration. [testng] [2024-11-09 00:44:20,117] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 00:44:20,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:44:20,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:20,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-09_00-44-20.log] [testng] 00:44:20,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b901877 - End of configuration. [testng] [2024-11-09 00:44:20,493] [pool-1-thread-10] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:44:20,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:44:20,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:20,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-09_00-44-20.log] [testng] 00:44:20,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@434888f3 - End of configuration. [testng] [2024-11-09 00:44:20,782] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA: [testng] 00:44:20,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:44:20,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:20,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-09_00-44-20.log] [testng] 00:44:20,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53afc15b - End of configuration. [testng] [2024-11-09 00:44:21,204] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA: [testng] 00:44:21,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:44:21,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:21,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-09_00-44-21.log] [testng] 00:44:21,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4905d351 - End of configuration. [testng] [2024-11-09 00:44:21,617] [pool-1-thread-7] Initializing /data/samples/UBW8.TGA: [testng] 00:44:21,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:44:21,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:21,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-09_00-44-21.log] [testng] 00:44:21,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a57d484 - End of configuration. [testng] [2024-11-09 00:44:21,839] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 00:44:21,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:44:21,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:21,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-09_00-44-21.log] [testng] 00:44:21,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28cc416f - End of configuration. [testng] [2024-11-09 00:44:21,998] [pool-1-thread-5] Initializing /data/samples/XING_B24.TGA: [testng] 00:44:21,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:44:21,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:21,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-09_00-44-21.log] [testng] 00:44:21,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b8bca5c - End of configuration. [testng] [2024-11-09 00:44:22,159] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 00:44:22,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:44:22,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:22,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-09_00-44-22.log] [testng] 00:44:22,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ec96726 - End of configuration. [testng] [2024-11-09 00:44:22,322] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: [testng] 00:44:22,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:44:22,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:22,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-09_00-44-22.log] [testng] 00:44:22,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340f8108 - End of configuration. [testng] [2024-11-09 00:44:22,476] [pool-1-thread-2] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:44:22,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:44:22,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:22,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-09_00-44-22.log] [testng] 00:44:22,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7487962c - End of configuration. [testng] [2024-11-09 00:44:27,367] [pool-1-thread-8] Initializing /data/samples/UTC16.TGA: [testng] [2024-11-09 00:44:27,895] [pool-1-thread-9] Initializing /data/samples/XING_B32.TGA: [testng] [2024-11-09 00:44:28,163] [pool-1-thread-2] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-11-09 00:44:28,464] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA: [testng] [2024-11-09 00:44:29,185] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA: [testng] [2024-11-09 00:44:30,027] [pool-1-thread-12] Initializing /data/samples/XING_T16.TGA: [testng] [2024-11-09 00:44:30,761] [pool-1-thread-5] Initializing /data/samples/XING_B16.TGA: [testng] [2024-11-09 00:44:31,479] [pool-1-thread-4] Initializing /data/samples/UTC24.TGA: [testng] [2024-11-09 00:44:32,128] [pool-1-thread-1] Initializing /data/samples/XING_T32.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 seconds Finished: SUCCESS