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Started by upstream project "BIOFORMATS-test-repo" build number 250 originally caused by: Started by upstream project "Trigger" build number 274 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins5997929623780100802.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39405_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:15:54,527 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:15:54,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 02:15:54,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:15:54,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:15:54,530 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:15:54,531 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:15:54,531 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:15:54,531 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:15:54,531 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:15:54,532 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:15:54,532 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:15:54,533 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:15:54,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:15:54,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:15:54,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:15:54,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:15:54,748 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:15:54,748 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:15:54,748 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:15:54,749 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:15:54,749 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 02:15:54,749 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 02:15:54,750 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 219 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-09 02:15:54,758] [main] java.version = 11.0.16 [testng] 02:15:54,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:15:54,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:54,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-09_02-15-54.log] [testng] 02:15:54,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-09 02:15:54,806] [main] testng.directory = /data [testng] [2024-11-09 02:15:54,807] [main] testng.configDirectory = /config [testng] [2024-11-09 02:15:54,816] [main] testng.multiplier = 1.0 [testng] [2024-11-09 02:15:54,817] [main] testng.in-memory = false [testng] [2024-11-09 02:15:54,818] [main] testng.allow-missing = false [testng] [2024-11-09 02:15:54,818] [main] user.language = en [testng] [2024-11-09 02:15:54,818] [main] user.country = ${user.country} [testng] [2024-11-09 02:15:54,818] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-09 02:19:41,827] [main] ---------------------------------------- [testng] [2024-11-09 02:19:41,827] [main] Total files: 268 [testng] [2024-11-09 02:19:41,827] [main] Scan time: 227.009 s (847 ms/file) [testng] [2024-11-09 02:19:41,827] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-09 02:25:07,492] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] 02:25:07,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:25:07,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:07,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-09_02-25-07.log] [testng] 02:25:07,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67c1bbab - End of configuration. [testng] [2024-11-09 02:25:08,133] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] 02:25:08,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:25:08,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:08,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-09_02-25-08.log] [testng] 02:25:08,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b6a5b72 - End of configuration. [testng] [2024-11-09 02:25:08,630] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] 02:25:08,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:25:08,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:08,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-09_02-25-08.log] [testng] 02:25:08,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c15e3b - End of configuration. [testng] [2024-11-09 02:25:10,113] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] 02:25:10,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:25:10,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:10,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-09_02-25-10.log] [testng] 02:25:10,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c517b6 - End of configuration. [testng] [2024-11-09 02:25:10,657] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] 02:25:10,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:25:10,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:10,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-09_02-25-10.log] [testng] 02:25:10,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1669189 - End of configuration. [testng] [2024-11-09 02:25:11,252] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 02:25:11,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:25:11,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:11,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-09_02-25-11.log] [testng] 02:25:11,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6aac9b73 - End of configuration. [testng] [2024-11-09 02:25:11,817] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] 02:25:11,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:25:11,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:11,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-09_02-25-11.log] [testng] 02:25:11,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41e01734 - End of configuration. [testng] [2024-11-09 02:25:13,656] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] 02:25:13,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:25:13,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:13,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-09_02-25-13.log] [testng] 02:25:13,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad6f042 - End of configuration. [testng] [2024-11-09 02:25:14,077] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 02:25:14,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:25:14,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:14,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-09_02-25-14.log] [testng] 02:25:14,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24ae2e86 - End of configuration. [testng] [2024-11-09 02:25:14,501] [pool-1-thread-4] Initializing /data/steve/FITS/M13.fits: [testng] 02:25:14,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:25:14,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:14,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-09_02-25-14.log] [testng] 02:25:14,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5859fb4b - End of configuration. [testng] [2024-11-09 02:25:14,620] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] 02:25:14,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:25:14,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:14,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-09_02-25-14.log] [testng] 02:25:14,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@640d7d08 - End of configuration. [testng] [2024-11-09 02:25:16,019] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] 02:25:16,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:25:16,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:16,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-09_02-25-16.log] [testng] 02:25:16,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ed9c18d - End of configuration. [testng] [2024-11-09 02:25:20,407] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-11-09 02:25:23,812] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-11-09 02:25:24,240] [pool-1-thread-10] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-11-09 02:25:25,911] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-11-09 02:25:27,735] [pool-1-thread-9] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-11-09 02:25:28,040] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-11-09 02:25:30,472] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-11-09 02:25:36,321] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-11-09 02:25:36,683] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-11-09 02:25:37,519] [pool-1-thread-3] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-11-09 02:25:39,321] [pool-1-thread-8] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-11-09 02:25:40,740] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-11-09 02:25:41,046] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-11-09 02:25:41,888] [pool-1-thread-11] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-11-09 02:25:42,255] [pool-1-thread-7] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-11-09 02:25:46,388] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-11-09 02:25:48,710] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-11-09 02:25:49,916] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-11-09 02:25:50,770] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-11-09 02:25:51,329] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-11-09 02:25:53,050] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-11-09 02:25:53,746] [pool-1-thread-12] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-11-09 02:25:55,539] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-11-09 02:25:55,882] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-11-09 02:25:56,645] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-11-09 02:25:59,833] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-11-09 02:26:00,991] [pool-1-thread-11] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-11-09 02:26:02,112] [pool-1-thread-2] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-11-09 02:26:02,820] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-11-09 02:26:03,626] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-11-09 02:26:05,512] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-11-09 02:26:07,280] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-11-09 02:26:09,562] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-11-09 02:26:10,474] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-11-09 02:26:15,039] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-11-09 02:26:19,197] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-11-09 02:26:20,139] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-11-09 02:26:20,710] [pool-1-thread-12] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-11-09 02:26:21,726] [pool-1-thread-9] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-11-09 02:26:24,551] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-11-09 02:26:25,193] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-11-09 02:26:28,023] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-11-09 02:26:35,503] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-11-09 02:26:36,514] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-11-09 02:26:38,361] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-11-09 02:26:41,107] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits: [testng] [2024-11-09 02:26:41,374] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-11-09 02:26:44,720] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-11-09 02:26:47,818] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-11-09 02:26:50,793] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-11-09 02:26:53,949] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-11-09 02:26:55,636] [pool-1-thread-1] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-11-09 02:26:56,588] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-11-09 02:26:59,433] [pool-1-thread-10] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-11-09 02:27:00,572] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-11-09 02:27:03,259] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-11-09 02:27:04,115] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-11-09 02:27:07,891] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-11-09 02:27:09,973] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-11-09 02:27:10,949] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-11-09 02:27:11,804] [pool-1-thread-3] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-11-09 02:27:14,652] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-11-09 02:27:15,515] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-11-09 02:27:15,856] [pool-1-thread-10] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-11-09 02:27:19,960] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-11-09 02:27:20,196] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-11-09 02:27:24,227] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-11-09 02:27:25,023] [pool-1-thread-5] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-11-09 02:27:25,655] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-11-09 02:27:26,632] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-11-09 02:27:27,557] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-11-09 02:27:28,442] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-11-09 02:27:31,344] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-11-09 02:27:31,560] [pool-1-thread-8] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-11-09 02:27:33,778] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-11-09 02:27:38,264] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-11-09 02:27:41,144] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-11-09 02:27:43,660] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-11-09 02:27:46,962] [pool-1-thread-4] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-11-09 02:27:47,679] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-11-09 02:27:48,117] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-11-09 02:27:48,957] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-11-09 02:27:49,912] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-11-09 02:27:50,656] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-11-09 02:27:55,093] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-11-09 02:27:58,515] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-11-09 02:27:59,383] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-11-09 02:28:00,861] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-11-09 02:28:03,266] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-11-09 02:28:04,476] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-11-09 02:28:05,089] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-11-09 02:28:05,414] [pool-1-thread-2] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-11-09 02:28:07,366] [pool-1-thread-9] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-11-09 02:28:07,582] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-11-09 02:28:10,596] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-11-09 02:28:11,293] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-11-09 02:28:12,066] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-11-09 02:28:12,828] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-11-09 02:28:13,020] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-11-09 02:28:15,733] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-11-09 02:28:16,516] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-11-09 02:28:17,368] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-11-09 02:28:18,208] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-11-09 02:28:20,563] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-11-09 02:28:23,622] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits: [testng] [2024-11-09 02:28:24,975] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-11-09 02:28:27,694] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-11-09 02:28:28,527] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-11-09 02:28:29,176] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-11-09 02:28:29,944] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-11-09 02:28:30,564] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-11-09 02:28:31,196] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-11-09 02:28:32,113] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-11-09 02:28:36,194] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-11-09 02:28:36,708] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-11-09 02:28:38,485] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-11-09 02:28:39,833] [pool-1-thread-1] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-11-09 02:28:42,600] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-11-09 02:28:43,593] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-11-09 02:28:44,574] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-11-09 02:28:46,715] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-11-09 02:28:47,533] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-11-09 02:28:48,698] [pool-1-thread-7] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-11-09 02:28:51,780] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-11-09 02:28:52,477] [pool-1-thread-12] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-11-09 02:28:57,568] [pool-1-thread-9] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-11-09 02:29:00,601] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-11-09 02:29:01,499] [pool-1-thread-3] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-11-09 02:29:02,542] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-11-09 02:29:03,307] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-11-09 02:29:03,813] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-11-09 02:29:04,853] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-11-09 02:29:07,612] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-11-09 02:29:08,621] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-11-09 02:29:11,036] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-11-09 02:29:13,281] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-11-09 02:29:14,100] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-11-09 02:29:15,400] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-11-09 02:29:16,463] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-11-09 02:29:17,363] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-11-09 02:29:18,989] [pool-1-thread-4] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-11-09 02:29:19,891] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-11-09 02:29:20,896] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-11-09 02:29:22,273] [pool-1-thread-9] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-11-09 02:29:24,323] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-11-09 02:29:25,206] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-11-09 02:29:28,341] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-11-09 02:29:31,190] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 minutes 47 seconds Finished: SUCCESS