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Started by upstream project "BIOFORMATS-test-repo" build number 250 originally caused by: Started by upstream project "Trigger" build number 274 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins12235605712475874732.sh + '[' psd = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39449_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 04:40:39,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:40:39,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 04:40:39,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:40:39,839 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:40:39,839 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:40:39,840 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:40:39,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:40:39,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:40:39,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:40:39,841 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:40:39,841 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:40:39,841 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:40:40,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:40:40,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:40:40,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:40:40,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:40:40,039 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:40:40,039 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:40:40,039 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:40:40,040 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:40:40,040 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 04:40:40,040 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 04:40:40,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-09 04:40:40,049] [main] java.version = 11.0.16 [testng] 04:40:40,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:40:40,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:40,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-09_04-40-40.log] [testng] 04:40:40,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-09 04:40:40,099] [main] testng.directory = /data [testng] [2024-11-09 04:40:40,099] [main] testng.configDirectory = /config [testng] [2024-11-09 04:40:40,108] [main] testng.multiplier = 1.0 [testng] [2024-11-09 04:40:40,110] [main] testng.in-memory = false [testng] [2024-11-09 04:40:40,110] [main] testng.allow-missing = false [testng] [2024-11-09 04:40:40,110] [main] user.language = en [testng] [2024-11-09 04:40:40,110] [main] user.country = ${user.country} [testng] [2024-11-09 04:40:40,110] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-09 04:40:41,440] [main] ---------------------------------------- [testng] [2024-11-09 04:40:41,440] [main] Total files: 18 [testng] [2024-11-09 04:40:41,440] [main] Scan time: 1.33 s (73 ms/file) [testng] [2024-11-09 04:40:41,440] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-09 04:40:50,209] [pool-1-thread-1] Initializing /data/big-images/8kx8k.psd: [testng] 04:40:50,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:40:50,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:50,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-09_04-40-50.log] [testng] 04:40:50,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aa10d8e - End of configuration. [testng] [2024-11-09 04:40:50,765] [pool-1-thread-12] Initializing /data/misc/glossy_orbs.psd: [testng] 04:40:50,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:40:50,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:50,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-09_04-40-50.log] [testng] 04:40:50,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a44680 - End of configuration. [testng] [2024-11-09 04:40:51,200] [pool-1-thread-11] Initializing /data/ascb/607x.psd: [testng] 04:40:51,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:40:51,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:51,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-09_04-40-51.log] [testng] 04:40:51,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64c045fe - End of configuration. [testng] [2024-11-09 04:40:51,625] [pool-1-thread-10] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 04:40:51,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:40:51,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:51,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-09_04-40-51.log] [testng] 04:40:51,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19c27a86 - End of configuration. [testng] [2024-11-09 04:40:52,033] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 04:40:52,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:40:52,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:52,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-09_04-40-52.log] [testng] 04:40:52,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33298cd8 - End of configuration. [testng] [2024-11-09 04:40:52,389] [pool-1-thread-8] Initializing /data/misc/venus_composite.psd: [testng] 04:40:52,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:40:52,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:52,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-09_04-40-52.log] [testng] 04:40:52,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c6dbbd7 - End of configuration. [testng] [2024-11-09 04:40:52,758] [pool-1-thread-7] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 04:40:52,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:40:52,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:52,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-09_04-40-52.log] [testng] 04:40:52,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eec7a4b - End of configuration. [testng] [2024-11-09 04:40:53,114] [pool-1-thread-6] Initializing /data/misc/smilie.psd: [testng] 04:40:53,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:40:53,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:53,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-09_04-40-53.log] [testng] 04:40:53,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0c5afb - End of configuration. [testng] [2024-11-09 04:40:53,463] [pool-1-thread-5] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 04:40:53,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:40:53,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:53,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-09_04-40-53.log] [testng] 04:40:53,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2147e37e - End of configuration. [testng] [2024-11-09 04:40:53,834] [pool-1-thread-4] Initializing /data/cris/house.tif: [testng] 04:40:53,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:40:53,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:53,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-09_04-40-53.log] [testng] 04:40:53,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d39b66d - End of configuration. [testng] [2024-11-09 04:40:54,940] [pool-1-thread-3] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 04:40:54,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:40:54,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:54,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-09_04-40-54.log] [testng] 04:40:54,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f548562 - End of configuration. [testng] [2024-11-09 04:40:55,260] [pool-1-thread-2] Initializing /data/misc/glossy_buttons.psd: [testng] 04:40:55,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:40:55,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:55,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-09_04-40-55.log] [testng] 04:40:55,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e239ce7 - End of configuration. [testng] [2024-11-09 04:40:59,799] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd: [testng] [2024-11-09 04:41:00,306] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-11-09 04:41:00,630] [pool-1-thread-2] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] [2024-11-09 04:41:00,985] [pool-1-thread-8] Initializing /data/misc/venus_composite_8bit.psd: [testng] [2024-11-09 04:41:01,308] [pool-1-thread-5] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-11-09 04:41:01,641] [pool-1-thread-7] Initializing /data/ascb/423.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 37 seconds Finished: SUCCESS