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Started by upstream project "BIOFORMATS-test-repo" build number 251 originally caused by: Started by upstream project "Trigger" build number 275 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins8487579025172919546.sh + '[' fei = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39508_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:35:47,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:35:47,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:35:47,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:35:47,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:35:47,042 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:35:47,042 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:35:47,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:35:47,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:35:47,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:35:47,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:35:47,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:35:47,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:35:47,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:35:47,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:35:47,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:35:47,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:35:47,223 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:35:47,223 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:35:47,223 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:35:47,224 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:35:47,224 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:35:47,224 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:35:47,224 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-10 00:35:47,232] [main] java.version = 17.0.2 [testng] 00:35:47,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:35:47,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:47,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-10_00-35-47.log] [testng] 00:35:47,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-10 00:35:47,276] [main] testng.directory = /data [testng] [2024-11-10 00:35:47,277] [main] testng.configDirectory = /config [testng] [2024-11-10 00:35:47,285] [main] testng.multiplier = 1.0 [testng] [2024-11-10 00:35:47,286] [main] testng.in-memory = false [testng] [2024-11-10 00:35:47,286] [main] testng.allow-missing = false [testng] [2024-11-10 00:35:47,286] [main] user.language = en [testng] [2024-11-10 00:35:47,286] [main] user.country = ${user.country} [testng] [2024-11-10 00:35:47,286] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-10 00:35:56,221] [main] ---------------------------------------- [testng] [2024-11-10 00:35:56,222] [main] Total files: 21 [testng] [2024-11-10 00:35:56,222] [main] Scan time: 8.935 s (425 ms/file) [testng] [2024-11-10 00:35:56,222] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-10 00:36:21,522] [pool-1-thread-1] Initializing /data/venu/VENU01.IMG: [testng] 00:36:21,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:36:21,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:21,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-10_00-36-21.log] [testng] 00:36:21,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7637dbf5 - End of configuration. [testng] [2024-11-10 00:36:21,949] [pool-1-thread-12] Initializing /data/venu/VENU_Eight.TIF: [testng] 00:36:21,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:36:21,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:21,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-10_00-36-21.log] [testng] 00:36:21,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47f2b635 - End of configuration. [testng] [2024-11-10 00:36:23,051] [pool-1-thread-11] Initializing /data/venu/VENU02.TIF: [testng] 00:36:23,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:36:23,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:23,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-10_00-36-23.log] [testng] 00:36:23,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d4dc4b1 - End of configuration. [testng] [2024-11-10 00:36:24,279] [pool-1-thread-10] Initializing /data/venu/VENU01.TIF: [testng] 00:36:24,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:36:24,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:24,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-10_00-36-24.log] [testng] 00:36:24,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68ccde51 - End of configuration. [testng] [2024-11-10 00:36:25,287] [pool-1-thread-9] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] 00:36:25,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:36:25,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:25,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-10_00-36-25.log] [testng] 00:36:25,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15564bbe - End of configuration. [testng] [2024-11-10 00:36:26,289] [pool-1-thread-8] Initializing /data/venu/VENU03.IMG: [testng] 00:36:26,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:36:26,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:26,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-10_00-36-26.log] [testng] 00:36:26,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c3e97fb - End of configuration. [testng] [2024-11-10 00:36:26,813] [pool-1-thread-7] Initializing /data/venu/VENU03.TIF: [testng] 00:36:26,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:36:26,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:26,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-10_00-36-26.log] [testng] 00:36:26,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@549d4219 - End of configuration. [testng] [2024-11-10 00:36:28,099] [pool-1-thread-6] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] 00:36:28,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:36:28,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:28,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-10_00-36-28.log] [testng] 00:36:28,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f5154c7 - End of configuration. [testng] [2024-11-10 00:36:29,473] [pool-1-thread-5] Initializing /data/venu/VENU_Seven.TIF: [testng] 00:36:29,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:36:29,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:29,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-10_00-36-29.log] [testng] 00:36:29,474 |-INFO in ch.qos.logback.core.sift.SiftProcessor@629e532e - End of configuration. [testng] [2024-11-10 00:36:30,498] [pool-1-thread-4] Initializing /data/venu/VENU.TIF: [testng] 00:36:30,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:36:30,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:30,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-10_00-36-30.log] [testng] 00:36:30,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c294f13 - End of configuration. [testng] [2024-11-10 00:36:31,612] [pool-1-thread-3] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 00:36:31,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:36:31,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:31,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-10_00-36-31.log] [testng] 00:36:31,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289d7cf3 - End of configuration. [testng] [2024-11-10 00:36:32,632] [pool-1-thread-2] Initializing /data/steffen/Batman_008.tif: [testng] 00:36:32,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:36:32,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:32,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-10_00-36-32.log] [testng] 00:36:32,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21ccea5c - End of configuration. [testng] [2024-11-10 00:36:38,865] [pool-1-thread-8] Initializing /data/venu/VENU_Five.TIF: [testng] [2024-11-10 00:36:40,703] [pool-1-thread-1] Initializing /data/venu/VENU_Six.TIF: [testng] [2024-11-10 00:36:46,215] [pool-1-thread-9] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] [2024-11-10 00:36:47,590] [pool-1-thread-12] Initializing /data/venu/VENU02.IMG: [testng] [2024-11-10 00:36:48,112] [pool-1-thread-2] Initializing /data/venu/VENU_Four.TIF: [testng] [2024-11-10 00:36:49,534] [pool-1-thread-4] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 16 seconds Finished: SUCCESS