![[Jenkins]](/jenkins/static/f6f303f9/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 251 originally caused by: Started by upstream project "Trigger" build number 275 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins17949293373439092741.sh + '[' pict = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39531_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:00:18,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:00:18,037 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:00:18,037 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:00:18,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:00:18,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:00:18,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:00:18,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:00:18,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:00:18,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:00:18,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:00:18,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:00:18,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:00:18,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:00:18,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:00:18,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:00:18,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:00:18,258 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:00:18,259 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:00:18,259 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:00:18,259 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:00:18,259 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:00:18,260 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:00:18,260 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 220 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-10 01:00:18,269] [main] java.version = 17.0.2 [testng] 01:00:18,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:00:18,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:18,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-10_01-00-18.log] [testng] 01:00:18,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-10 01:00:18,320] [main] testng.directory = /data [testng] [2024-11-10 01:00:18,320] [main] testng.configDirectory = /config [testng] [2024-11-10 01:00:18,329] [main] testng.multiplier = 1.0 [testng] [2024-11-10 01:00:18,330] [main] testng.in-memory = false [testng] [2024-11-10 01:00:18,330] [main] testng.allow-missing = false [testng] [2024-11-10 01:00:18,330] [main] user.language = en [testng] [2024-11-10 01:00:18,330] [main] user.country = ${user.country} [testng] [2024-11-10 01:00:18,330] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-10 01:00:19,306] [main] ---------------------------------------- [testng] [2024-11-10 01:00:19,306] [main] Total files: 25 [testng] [2024-11-10 01:00:19,306] [main] Scan time: 0.975 s (39 ms/file) [testng] [2024-11-10 01:00:19,306] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-10 01:00:24,837] [pool-1-thread-1] Initializing /data/brian/images/VENUS.pct: [testng] 01:00:24,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:00:24,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:24,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-10_01-00-24.log] [testng] 01:00:24,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fc2998a - End of configuration. [testng] [2024-11-10 01:00:25,038] [pool-1-thread-12] Initializing /data/misc/swlogo.pict: [testng] 01:00:25,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:00:25,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-10_01-00-25.log] [testng] 01:00:25,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@331d7e76 - End of configuration. [testng] [2024-11-10 01:00:25,214] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:00:25,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:00:25,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-10_01-00-25.log] [testng] 01:00:25,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b475107 - End of configuration. [testng] [2024-11-10 01:00:25,400] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT: [testng] 01:00:25,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:00:25,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-10_01-00-25.log] [testng] 01:00:25,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40418caf - End of configuration. [testng] [2024-11-10 01:00:25,578] [pool-1-thread-9] Initializing /data/jqd/mireSixteen.pict: [testng] 01:00:25,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:00:25,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-10_01-00-25.log] [testng] 01:00:25,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ea0f19d - End of configuration. [testng] [2024-11-10 01:00:25,674] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 01:00:25,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:00:25,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-10_01-00-25.log] [testng] 01:00:25,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@776f570e - End of configuration. [testng] [2024-11-10 01:00:26,040] [pool-1-thread-7] Initializing /data/misc/planet2.pict: [testng] 01:00:26,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:00:26,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:26,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-10_01-00-26.log] [testng] 01:00:26,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6079e00b - End of configuration. [testng] [2024-11-10 01:00:26,184] [pool-1-thread-6] Initializing /data/jqd/sixteenBit.pict: [testng] 01:00:26,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:00:26,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:26,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-10_01-00-26.log] [testng] 01:00:26,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@decaa1c - End of configuration. [testng] [2024-11-10 01:00:26,280] [pool-1-thread-5] Initializing /data/jqd/32bit.pict: [testng] 01:00:26,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:00:26,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:26,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-10_01-00-26.log] [testng] 01:00:26,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132f6115 - End of configuration. [testng] [2024-11-10 01:00:26,386] [pool-1-thread-4] Initializing /data/misc/planet.png: [testng] 01:00:26,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:00:26,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:26,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-10_01-00-26.log] [testng] 01:00:26,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e5990b9 - End of configuration. [testng] [2024-11-10 01:00:26,399] [pool-1-thread-3] Initializing /data/jqd/mire32.pict: [testng] 01:00:26,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:00:26,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:26,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-10_01-00-26.log] [testng] 01:00:26,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72d88b07 - End of configuration. [testng] [2024-11-10 01:00:26,483] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT: [testng] 01:00:26,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:00:26,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:26,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-10_01-00-26.log] [testng] 01:00:26,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32560d26 - End of configuration. [testng] [2024-11-10 01:00:28,392] [pool-1-thread-4] Initializing /data/brian/images/BLK.PCT: [testng] [2024-11-10 01:00:29,139] [pool-1-thread-9] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-11-10 01:00:29,254] [pool-1-thread-7] Initializing /data/brian/images/BLU.PCT: [testng] [2024-11-10 01:00:29,357] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-11-10 01:00:29,580] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-11-10 01:00:29,648] [pool-1-thread-6] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-11-10 01:00:29,732] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-11-10 01:00:29,806] [pool-1-thread-2] Initializing /data/brian/images/WHT.PCT: [testng] [2024-11-10 01:00:29,899] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-11-10 01:00:29,978] [pool-1-thread-11] Initializing /data/misc/planet.pict: [testng] [2024-11-10 01:00:30,115] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-11-10 01:00:30,445] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-11-10 01:00:31,594] [pool-1-thread-4] Initializing /data/brian/images/GRN.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 seconds Finished: SUCCESS