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Started by upstream project "BIOFORMATS-test-repo" build number 251 originally caused by: Started by upstream project "Trigger" build number 275 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins1858684049327716182.sh + '[' nd2 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39538_merge_ci -v /uod/idr/repos/curated/nd2:/data -v /uod/idr-scratch/merge-ci/curated/nd2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:03:49,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:03:49,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:03:49,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:03:49,019 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:03:49,019 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:03:49,019 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:03:49,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:03:49,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:03:49,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:03:49,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:03:49,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:03:49,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:03:49,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:03:49,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:03:49,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:03:49,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:03:49,205 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:03:49,205 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:03:49,205 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:03:49,206 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:03:49,206 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:03:49,206 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:03:49,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-10 01:03:49,215] [main] java.version = 17.0.2 [testng] 01:03:49,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:03:49,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:49,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-10_01-03-49.log] [testng] 01:03:49,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-10 01:03:49,263] [main] testng.directory = /data [testng] [2024-11-10 01:03:49,264] [main] testng.configDirectory = /config [testng] [2024-11-10 01:03:49,272] [main] testng.multiplier = 1.0 [testng] [2024-11-10 01:03:49,273] [main] testng.in-memory = false [testng] [2024-11-10 01:03:49,273] [main] testng.allow-missing = false [testng] [2024-11-10 01:03:49,273] [main] user.language = en [testng] [2024-11-10 01:03:49,273] [main] user.country = ${user.country} [testng] [2024-11-10 01:03:49,273] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-10 01:08:58,612] [main] ---------------------------------------- [testng] [2024-11-10 01:08:58,612] [main] Total files: 275 [testng] [2024-11-10 01:08:58,612] [main] Scan time: 309.339 s (1124 ms/file) [testng] [2024-11-10 01:08:58,612] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 247 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-10 01:21:58,326] [pool-1-thread-1] Initializing /data/michael/MCammer Nikon file opens in wrong order.nd2: [testng] 01:21:58,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:21:58,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:58,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-10_01-21-58.log] [testng] 01:21:58,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4669eb89 - End of configuration. [testng] [2024-11-10 01:21:59,794] [pool-1-thread-12] Initializing /data/michael/metadata only reported for last channel.nd2: [testng] 01:21:59,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:21:59,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:59,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-10_01-21-59.log] [testng] 01:21:59,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75b5e2ed - End of configuration. [testng] [2024-11-10 01:22:00,763] [pool-1-thread-11] Initializing /data/qa-29438/chip1_channel1_each-pixel.nd2: [testng] 01:22:00,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:00,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:00,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-10_01-22-00.log] [testng] 01:22:00,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b960ddb - End of configuration. [testng] [2024-11-10 01:22:01,647] [pool-1-thread-10] Initializing /data/venu/eight_160807_control cells_4D.tif: [testng] 01:22:01,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:01,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:01,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-10_01-22-01.log] [testng] 01:22:01,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5193aac4 - End of configuration. [testng] [2024-11-10 01:22:03,405] [pool-1-thread-9] Initializing /data/michael/Opens ok with LOCI.nd2: [testng] 01:22:03,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:03,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:03,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-10_01-22-03.log] [testng] 01:22:03,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78b425e2 - End of configuration. [testng] [2024-11-10 01:22:04,416] [pool-1-thread-8] Initializing /data/qa-4196/120123 10h timelapse after incubator set up 1xy 1t.nd2: [testng] 01:22:04,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:04,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-10_01-22-04.log] [testng] 01:22:04,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7951fc50 - End of configuration. [testng] [2024-11-10 01:22:05,426] [pool-1-thread-7] Initializing /data/qa-7799/Patient 67 from 20130812.nd2: [testng] 01:22:05,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:05,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:05,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-10_01-22-05.log] [testng] 01:22:05,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b94dfd9 - End of configuration. [testng] [2024-11-10 01:22:06,431] [pool-1-thread-6] Initializing /data/strand/Serie040.nd2: [testng] 01:22:06,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:06,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:06,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-10_01-22-06.log] [testng] 01:22:06,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eb36878 - End of configuration. [testng] [2024-11-10 01:22:07,704] [pool-1-thread-5] Initializing /data/qa-17099/upSIAPdownNT002.nd2: [testng] 01:22:07,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:07,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:07,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-10_01-22-07.log] [testng] 01:22:07,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c8696bb - End of configuration. [testng] [2024-11-10 01:22:08,870] [pool-1-thread-4] Initializing /data/public/aryeh/multipoint.nd2: [testng] 01:22:08,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:08,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:08,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-10_01-22-08.log] [testng] 01:22:08,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4232376f - End of configuration. [testng] [2024-11-10 01:22:10,414] [pool-1-thread-3] Initializing /data/gaurav/A1.nd2: [testng] 01:22:10,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:10,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:10,415 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-10_01-22-10.log] [testng] 01:22:10,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d96110 - End of configuration. [testng] [2024-11-10 01:22:11,580] [pool-1-thread-2] Initializing /data/qa-7906/2591A1.jp2: [testng] 01:22:11,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:11,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:11,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-10_01-22-11.log] [testng] 01:22:11,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dcee0a8 - End of configuration. [testng] [2024-11-10 01:22:22,599] [pool-1-thread-11] Initializing /data/colin/20110729_beads_001.nd2: [testng] [2024-11-10 01:22:24,367] [pool-1-thread-8] Initializing /data/venu/nd-three_channel-6.nd2: [testng] [2024-11-10 01:22:25,765] [pool-1-thread-5] Initializing /data/qa-27812/Deconvolved_32Float.nd2: [testng] [2024-11-10 01:22:27,004] [pool-1-thread-12] Initializing /data/colin/20110729_beads_001_xy1.nd2: [testng] [2024-11-10 01:22:28,412] [pool-1-thread-6] Initializing /data/qa-7983/control_test_200314001.nd2: [testng] [2024-11-10 01:22:29,752] [pool-1-thread-9] Initializing /data/kevin/100nm_coat_1.nd2: [testng] [2024-11-10 01:22:31,921] [pool-1-thread-3] Initializing /data/public/aryeh/por003.nd2: [testng] [2024-11-10 01:22:33,296] [pool-1-thread-10] Initializing /data/michael/opens_ok.nd2: [testng] [2024-11-10 01:22:43,266] [pool-1-thread-1] Initializing /data/brian/MDCK002.nd2: [testng] [2024-11-10 01:22:45,561] [pool-1-thread-5] Initializing /data/marek/NIS4_fails_to_open_correctly.nd2: [testng] [2024-11-10 01:22:47,906] [pool-1-thread-12] Initializing /data/public/jonas/header_test2.nd2: [testng] [2024-11-10 01:22:49,316] [pool-1-thread-8] Initializing /data/david/NDSequence013.nd2: [testng] [2024-11-10 01:22:50,835] [pool-1-thread-11] Initializing /data/stefanie/nd026_xy1.nd2: [testng] [2024-11-10 01:22:52,466] [pool-1-thread-2] Initializing /data/pete/psf_bead_theoretical.nd2: [testng] [2024-11-10 01:22:53,728] [pool-1-thread-6] Initializing /data/michael/TEMPmcammer.nd2: [testng] [2024-11-10 01:22:55,607] [pool-1-thread-9] Initializing /data/jcb/201101064/Fig 8B imp beta-BPM MaxIP.nd2: [testng] [2024-11-10 01:22:56,881] [pool-1-thread-3] Initializing /data/qa-7454/Dapi PFA Eukitt 1r 001.nd2: [testng] [2024-11-10 01:23:00,302] [pool-1-thread-10] Initializing /data/venu/two_160807_control cells_4D.tif: [testng] [2024-11-10 01:23:03,035] [pool-1-thread-4] Initializing /data/public/aryeh/but3_cont2002.nd2: [testng] [2024-11-10 01:23:05,477] [pool-1-thread-1] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.nd2: [testng] [2024-11-10 01:23:08,723] [pool-1-thread-7] Initializing /data/public/jonas/qa-7534/130606_JCC719_003.nd2: [testng] [2024-11-10 01:23:11,526] [pool-1-thread-5] Initializing /data/colin/20110729_beads_001_xy2.nd2: [testng] [2024-11-10 01:23:13,071] [pool-1-thread-12] Initializing /data/jason/CapturedBF2.nd2: [testng] [2024-11-10 01:23:14,557] [pool-1-thread-2] Initializing /data/stephen/LOCI_screen_dump.jpg: [testng] [2024-11-10 01:23:16,392] [pool-1-thread-11] Initializing /data/karsten/100720104_TestglasSchott_MM63_C16h_SYTO.nd2: [testng] [2024-11-10 01:23:17,792] [pool-1-thread-8] Initializing /data/dan/120109_test.nd2: [testng] [2024-11-10 01:23:20,569] [pool-1-thread-9] Initializing /data/tom/512x512x11 1um step.nd2: [testng] [2024-11-10 01:23:23,663] [pool-1-thread-2] Initializing /data/jennet/2D001_crop.nd2: [testng] [2024-11-10 01:23:25,191] [pool-1-thread-6] Initializing /data/michael/mcammer BUT THIS FILE OPENS FINE.nd2: [testng] [2024-11-10 01:23:26,804] [pool-1-thread-3] Initializing /data/dan-dickinson/141_mChCtrl_002.nd2: [testng] [2024-11-10 01:23:28,335] [pool-1-thread-7] Initializing /data/chris/228 and 340.nd2: [testng] [2024-11-10 01:23:29,811] [pool-1-thread-5] Initializing /data/qa-29043/Actin-Polymerization-10min-2s.nd2: [testng] [2024-11-10 01:23:31,165] [pool-1-thread-10] Initializing /data/matt/Final merge.nd2: [testng] [2024-11-10 01:23:32,455] [pool-1-thread-12] Initializing /data/venu/nd-two_channel-2.nd2: [testng] [2024-11-10 01:23:39,573] [pool-1-thread-8] Initializing /data/josh/072007h.nd2: [testng] [2024-11-10 01:23:40,897] [pool-1-thread-9] Initializing /data/leon/WellA1_Seq0000.nd2: [testng] [2024-11-10 01:23:46,024] [pool-1-thread-2] Initializing /data/public/aryeh/b16_pdtB+y50__crop.nd2: [testng] [2024-11-10 01:23:48,686] [pool-1-thread-5] Initializing /data/imagesc-76438/Slide2-20-1_Region0001_ChannelBrightfield_Seq0003.nd2: [testng] [2024-11-10 01:23:53,547] [pool-1-thread-3] Initializing /data/imagesc-76438/Slide2-20-1_Region0000_ChannelBrightfield_Seq0002.nd2: [testng] [2024-11-10 01:23:57,319] [pool-1-thread-10] Initializing /data/fiji-655/01.nd2: [testng] [2024-11-10 01:23:58,953] [pool-1-thread-6] Initializing /data/public/aryeh/rfp_h2a_cells_02.nd2: [testng] [2024-11-10 01:24:06,587] [pool-1-thread-12] Initializing /data/kevin/test3.nd2: [testng] [2024-11-10 01:24:07,869] [pool-1-thread-7] Initializing /data/michael/MCammer Nikon file that wont open.nd2: [testng] [2024-11-10 01:24:12,558] [pool-1-thread-8] Initializing /data/public/jonas/header_test1.nd2: [testng] [2024-11-10 01:24:17,824] [pool-1-thread-4] Initializing /data/public/jonas/divisionByZero/290110.tranMgc005cr.nd2: [testng] [2024-11-10 01:24:21,228] [pool-1-thread-9] Initializing /data/unknown_fiji_upload/Day_2_A4_10x_Fluor_Z_Stack.nd2: [testng] [2024-11-10 01:24:22,608] [pool-1-thread-11] Initializing /data/yanmei/snapcells-vps2.nd2: [testng] [2024-11-10 01:24:25,812] [pool-1-thread-12] Initializing /data/qa-28060/20191023-htirf-888.nd2: [testng] [2024-11-10 01:24:27,036] [pool-1-thread-7] Initializing /data/christian/CW002_3_rfp.nd2: [testng] [2024-11-10 01:24:28,280] [pool-1-thread-10] Initializing /data/qa-4958/556_t2.nd2: [testng] [2024-11-10 01:24:29,517] [pool-1-thread-1] Initializing /data/katherina/120312_488HP_Convallaria nueva.nd2: [testng] [2024-11-10 01:24:34,825] [pool-1-thread-8] Initializing /data/hallie/RNAi Plate 4.nd2: [testng] [2024-11-10 01:24:40,943] [pool-1-thread-9] Initializing /data/public/aryeh/4_2_1_cont_NoMR001.nd2: [testng] [2024-11-10 01:24:47,994] [pool-1-thread-1] Initializing /data/qa-11064/t2_mp8_z4_ch3_.nd2: [testng] [2024-11-10 01:24:50,182] [pool-1-thread-11] Initializing /data/qa-7906/2591A.jp2: [testng] [2024-11-10 01:24:52,241] [pool-1-thread-10] Initializing /data/public/jonas/512c/nikonTest_two.nd2: [testng] [2024-11-10 01:24:53,908] [pool-1-thread-7] Initializing /data/katherina/120312_488HP_Convallaria nueva - C=1.tif: [testng] [2024-11-10 01:24:57,223] [pool-1-thread-12] Initializing /data/qa-7906/2591B1.jp2: [testng] [2024-11-10 01:25:09,373] [pool-1-thread-4] Initializing /data/qa-11064/t2_mp8_z4_ch3__channelsDeleted.nd2: [testng] [2024-11-10 01:25:13,258] [pool-1-thread-10] Initializing /data/rehan/P128.nd2: [testng] [2024-11-10 01:25:20,068] [pool-1-thread-7] Initializing /data/gh-2955/cluster.nd2: [testng] [2024-11-10 01:25:22,453] [pool-1-thread-1] Initializing /data/nadya/Capture1.PNG: [testng] [2024-11-10 01:25:26,930] [pool-1-thread-1] Initializing /data/public/aryeh/4_con_2_1_cot002.nd2: [testng] [2024-11-10 01:25:36,632] [pool-1-thread-4] Initializing /data/imagesc-76438/Slide2-20-2_Region0001_ChannelBrightfield_Seq0011.nd2: [testng] [2024-11-10 01:25:50,731] [pool-1-thread-2] Initializing /data/public/jonas/2.nd2: [testng] [2024-11-10 01:25:55,033] [pool-1-thread-12] Initializing /data/public/jonas/control002.nd2: [testng] [2024-11-10 01:25:56,661] [pool-1-thread-11] Initializing /data/qa-7303/CTR_012.nd2: [testng] [2024-11-10 01:25:59,241] [pool-1-thread-7] Initializing /data/kevin/sfeertjes 100 nm 10 000x 15p (1).nd2: [testng] [2024-11-10 01:26:00,752] [pool-1-thread-9] Initializing /data/public/jonas/3.nd2: [testng] [2024-11-10 01:26:20,179] [pool-1-thread-10] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_control_24h_03.nd2: [testng] [2024-11-10 01:26:30,272] [pool-1-thread-12] Initializing /data/qa-29634/20201007_2_OCT4DBD-Halo_PA64625nM_1kframe_tail_7ms_40pert_008.nd2: [testng] [2024-11-10 01:26:31,728] [pool-1-thread-7] Initializing /data/stephen/Cody_Temp_Copy_crop.nd2: [testng] [2024-11-10 01:26:33,499] [pool-1-thread-11] Initializing /data/jcb/201101064/Fig 8B imp beta-BPN MaxIP.nd2: [testng] [2024-11-10 01:26:35,123] [pool-1-thread-6] Initializing /data/cameron/CamND2.nd2: [testng] [2024-11-10 01:26:37,896] [pool-1-thread-10] Initializing /data/michael/10um skewed.nd2: [testng] [2024-11-10 01:26:42,306] [pool-1-thread-2] Initializing /data/qa-29006/Voltron_Test004.nd2: [testng] [2024-11-10 01:26:46,222] [pool-1-thread-12] Initializing /data/venu/nd-two_channel-1.nd2: [testng] [2024-11-10 01:26:47,963] [pool-1-thread-7] Initializing /data/pki/15July2011 ImClone multiwell test file.nd2: [testng] [2024-11-10 01:26:50,203] [pool-1-thread-6] Initializing /data/public/maxime/BF007.nd2: [testng] [2024-11-10 01:26:51,749] [pool-1-thread-11] Initializing /data/richard/KitWv67-72.nd2: [testng] [2024-11-10 01:26:58,767] [pool-1-thread-10] Initializing /data/helene/testseries1.nd2: [testng] [2024-11-10 01:27:01,306] [pool-1-thread-2] Initializing /data/imagesc-76438/Slide2-20-2_ChannelBrightfield_Seq0009.nd2: [testng] [2024-11-10 01:27:03,693] [pool-1-thread-7] Initializing /data/tom/1024x1024.nd2: [testng] [2024-11-10 01:27:06,072] [pool-1-thread-6] Initializing 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Initializing /data/mariana/Captured 1.nd2: [testng] [2024-11-10 01:28:48,099] [pool-1-thread-3] Initializing /data/public/aryeh/MeOh_high_fluo_003.nd2: [testng] [2024-11-10 01:28:49,480] [pool-1-thread-1] Initializing /data/venu/N202-7 20x.nd2: [testng] [2024-11-10 01:28:52,163] [pool-1-thread-2] Initializing /data/guillaume/Lig_drugs051607.nd2: [testng] [2024-11-10 01:28:59,913] [pool-1-thread-5] Initializing /data/gh-3838/small_test.nd2: [testng] [2024-11-10 01:29:01,405] [pool-1-thread-12] Initializing /data/qa-4305/22492726_Figure 5_B_NA_3.nd2: [testng] [2024-11-10 01:29:03,038] [pool-1-thread-1] Initializing /data/liang/2x2 bad.nd2: [testng] [2024-11-10 01:29:04,634] [pool-1-thread-11] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.avi: [testng] [2024-11-10 01:29:05,403] [pool-1-thread-3] Initializing /data/kevin/lipo100nmPEG_1.nd2: [testng] [2024-11-10 01:29:06,621] [pool-1-thread-10] Initializing /data/qa-28066/20191203-htirf-sona.nd2: [testng] [2024-11-10 01:29:07,916] [pool-1-thread-8] Initializing /data/venu/nd-three_channel-3.nd2: [testng] [2024-11-10 01:29:09,445] [pool-1-thread-7] Initializing /data/venu/nd-two_channel-0.nd2: [testng] [2024-11-10 01:29:10,683] [pool-1-thread-6] Initializing /data/yarden/Session26_Well1_10x.nd2: [testng] [2024-11-10 01:29:17,108] [pool-1-thread-5] Initializing /data/public/aryeh/old_cells_02.nd2: [testng] [2024-11-10 01:29:19,742] [pool-1-thread-2] Initializing /data/richard/KitWv#67.avi: [testng] [2024-11-10 01:29:21,114] [pool-1-thread-11] Initializing /data/stefanie/nd026_xy3.nd2: [testng] [2024-11-10 01:29:23,687] [pool-1-thread-3] Initializing /data/qa-29035/Seq0000.nd2: [testng] [2024-11-10 01:29:26,330] [pool-1-thread-12] Initializing /data/kevin/DD100liposomes_1.nd2: [testng] [2024-11-10 01:29:29,013] [pool-1-thread-10] Initializing /data/michael/opened skewed - C=0.tif: [testng] [2024-11-10 01:29:31,768] [pool-1-thread-7] Initializing /data/kyle-vrtis/180627 1e Cas9 GINS collapse lag lag.nd2: [testng] [2024-11-10 01:29:33,229] [pool-1-thread-1] Initializing /data/michael/frap0041 00X 1Xeyepiece 15sec Cy5 ICAM TIRF.nd2: [testng] [2024-11-10 01:29:34,756] [pool-1-thread-8] Initializing /data/public/aryeh/qa-9507/control003.nd2: [testng] [2024-11-10 01:29:37,981] [pool-1-thread-5] Initializing /data/rehan/P128 wt pg bouton.ics: [testng] [2024-11-10 01:29:43,257] [pool-1-thread-11] Initializing /data/josh/CGE1.nd2: [testng] [2024-11-10 01:29:46,298] [pool-1-thread-3] Initializing /data/christian/missing-dimensions-test.nd2: [testng] [2024-11-10 01:29:48,131] [pool-1-thread-12] Initializing /data/public/jonas/512c/nikonTest_1.nd2: [testng] [2024-11-10 01:29:54,752] [pool-1-thread-1] Initializing /data/public/jonas/512c/wtf_alignment.nd2: [testng] [2024-11-10 01:29:57,530] [pool-1-thread-11] Initializing /data/venu/nd-three_channel-2.nd2: [testng] [2024-11-10 01:29:59,394] [pool-1-thread-3] Initializing /data/ye-chen/LOCI_YeChen_Swinburne.nd2: [testng] [2024-11-10 01:30:04,553] [pool-1-thread-7] Initializing /data/kyle/F301.nd2: [testng] [2024-11-10 01:30:07,004] [pool-1-thread-5] Initializing /data/michael/50um_004 skewed.nd2: [testng] [2024-11-10 01:30:09,155] [pool-1-thread-12] Initializing /data/tiao/WellC03_Seq0000.nd2: [testng] [2024-11-10 01:30:10,882] [pool-1-thread-10] Initializing /data/qa-7908/020514 SH003.nd2: [testng] [2024-11-10 01:30:17,146] [pool-1-thread-1] Initializing /data/venu/five_160807_control cells_4D.tif: [testng] [2024-11-10 01:30:19,676] [pool-1-thread-2] Initializing /data/henry/large image.nd2: [testng] [2024-11-10 01:30:23,486] [pool-1-thread-11] Initializing /data/qa-11064/t1_mp8_z4_chOff_005.nd2: [testng] [2024-11-10 01:30:25,011] [pool-1-thread-3] Initializing /data/nadya/flat.nd2: [testng] [2024-11-10 01:30:26,793] [pool-1-thread-10] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_conrol_24h_02.nd2: [testng] [2024-11-10 01:30:28,875] [pool-1-thread-12] Initializing /data/bernhard/962_xy1.nd2: [testng] [2024-11-10 01:30:30,585] [pool-1-thread-8] Initializing /data/plaissue/2channel-Zstack-withBinaryLayer.nd2: [testng] [2024-11-10 01:30:32,202] [pool-1-thread-5] Initializing /data/public/jonas/2112-2265.nd2: [testng] [2024-11-10 01:30:39,246] [pool-1-thread-2] Initializing /data/michael/test_MCammer.nd2: [testng] [2024-11-10 01:30:40,820] [pool-1-thread-7] Initializing /data/venu/N202-11 20x20.nd2: [testng] [2024-11-10 01:30:43,243] [pool-1-thread-3] Initializing /data/david/NDSequence012.nd2: [testng] [2024-11-10 01:30:45,531] [pool-1-thread-9] Initializing /data/gh-3565/example_metadata001.nd2: [testng] [2024-11-10 01:30:46,936] [pool-1-thread-10] Initializing /data/venu/nd-two_channel-3.nd2: [testng] [2024-11-10 01:30:48,663] [pool-1-thread-11] Initializing /data/john/M900117_CBP11555_C264M2_SOL_CD31_s1.nd2: [testng] [2024-11-10 01:30:50,852] [pool-1-thread-1] Initializing /data/stefanie/nd026_xy0.nd2: [testng] [2024-11-10 01:30:52,711] [pool-1-thread-8] Initializing /data/venu/N202.1A+7 2h.nd2: [testng] [2024-11-10 01:30:54,552] [pool-1-thread-12] Initializing /data/stefanie/200307_necl2.nd2: [testng] [2024-11-10 01:31:12,972] [pool-1-thread-4] Initializing /data/qa-9183/aaron_multi_positions.nd2: [testng] [2024-11-10 01:31:20,757] [pool-1-thread-2] Initializing /data/kevin/test1.nd2: [testng] [2024-11-10 01:31:24,140] [pool-1-thread-5] Initializing /data/qa-9207/n1e 570-wisp2 670-cdh6 -2(good 1-11)_xy1.nd2: [testng] [2024-11-10 01:31:25,928] [pool-1-thread-9] Initializing /data/jose/08_SO4_Fasc100_at_surface_w_average.nd2: [testng] [2024-11-10 01:31:28,102] [pool-1-thread-10] Initializing /data/sarah/sarah_1011.nd2: [testng] [2024-11-10 01:31:30,161] [pool-1-thread-7] Initializing /data/stephen/Cody_Temp_Copy_crop.tif: [testng] [2024-11-10 01:31:34,040] [pool-1-thread-3] Initializing /data/plaissue/4channel_Zseries.nd2: [testng] [2024-11-10 01:31:35,850] [pool-1-thread-1] Initializing /data/pki/20120730 RGB 293-S1PR1-eGFP 8 compound 24hr v1.nd2: [testng] [2024-11-10 01:31:37,502] [pool-1-thread-11] Initializing /data/kaustav/cell field2.nd2: [testng] [2024-11-10 01:31:39,162] [pool-1-thread-8] Initializing /data/michael/stopped-acquisition/ND2 file does not open MCammer.nd2: [testng] [2024-11-10 01:31:45,397] [pool-1-thread-4] Initializing /data/public/aryeh/weekend002.nd2: [testng] [2024-11-10 01:31:49,180] [pool-1-thread-2] Initializing /data/public/jonas/multicolorTest.nd2: [testng] [2024-11-10 01:31:52,934] [pool-1-thread-5] Initializing /data/qa-4836/MGH media d10 large image_crop.nd2: [testng] [2024-11-10 01:31:57,376] [pool-1-thread-3] Initializing /data/kyle/B204.nd2: [testng] [2024-11-10 01:31:59,431] [pool-1-thread-10] Initializing /data/michael/opened skewed - C=1.tif: [testng] [2024-11-10 01:32:05,128] [pool-1-thread-9] Initializing /data/david/NDSequence011.nd2: [testng] [2024-11-10 01:32:06,827] [pool-1-thread-8] Initializing /data/venu/three_160807_control cells_4D.tif: [testng] [2024-11-10 01:32:10,311] [pool-1-thread-11] Initializing /data/john/M900117_CBP11555_C264M2_GAST_T1_s1.nd2: [testng] [2024-11-10 01:32:12,520] [pool-1-thread-7] Initializing /data/jcb/201101064/Fig 8B imp beta alone-MaxIP.nd2: [testng] [2024-11-10 01:32:22,469] [pool-1-thread-2] Initializing /data/yanmei/snapcells-vps1002.nd2: [testng] [2024-11-10 01:32:27,972] [pool-1-thread-3] Initializing /data/public/karl/sample_image.nd2: [testng] [2024-11-10 01:32:29,510] [pool-1-thread-7] Initializing /data/venu/1_140508,control.nd2: [testng] [2024-11-10 01:32:31,326] [pool-1-thread-9] Initializing /data/public/jonas/512c/cag_p5_simgc_2511_70ms22s_crop.nd2: [testng] [2024-11-10 01:32:33,603] [pool-1-thread-4] Initializing /data/qa-10370/example_JPIKE.nd2: [testng] [2024-11-10 01:32:35,515] [pool-1-thread-10] Initializing /data/stefanie/nd27.nd2: [testng] [2024-11-10 01:32:37,314] [pool-1-thread-8] Initializing /data/damir/Plate000_Well1_Seq0000.nd2: [testng] [2024-11-10 01:32:43,904] [pool-1-thread-1] Initializing /data/uli/2012_04_19_CHOegfr_03.nd2: [testng] [2024-11-10 01:32:45,926] [pool-1-thread-2] Initializing /data/venu/N202-15 20x001.nd2: [testng] [2024-11-10 01:32:48,591] [pool-1-thread-11] Initializing /data/qa-17695/sample.nd2: [testng] [2024-11-10 01:32:51,476] [pool-1-thread-3] Initializing /data/public/jonas/jonas_nd2Test/Exception9_e3.nd2: [testng] [2024-11-10 01:32:54,321] [pool-1-thread-7] Initializing /data/kevin/100nm_1.nd2: [testng] [2024-11-10 01:32:57,414] [pool-1-thread-10] Initializing /data/qa-9193/60x oil line scan 1 airy mono.nd2: [testng] [2024-11-10 01:32:58,941] [pool-1-thread-9] Initializing /data/dallas/150609_m597_ut8.nd2: [testng] [2024-11-10 01:33:00,546] [pool-1-thread-5] Initializing /data/venu/six_160807_control cells_4D.tif: [testng] [2024-11-10 01:33:03,640] [pool-1-thread-1] Initializing /data/qa-7536/SampleND2-ChrisL.nd2: [testng] [2024-11-10 01:33:05,475] [pool-1-thread-4] Initializing /data/venu/nd-three_channel-0.nd2: [testng] [2024-11-10 01:33:11,703] [pool-1-thread-3] Initializing /data/michael/tiling_problem_mcammer.nd2: [testng] [2024-11-10 01:33:13,662] [pool-1-thread-11] Initializing /data/bioformats2raw-184/Round1-Slot_01-Slide_01-Region_1-Stitched-Focused.nd2: [testng] [2024-11-10 01:37:07,936] [pool-1-thread-2] Initializing /data/venu/nd-three_channel-4.nd2: [testng] [2024-11-10 01:37:10,687] [pool-1-thread-10] Initializing /data/public/jonas/512c/wtf_DIC.nd2: [testng] [2024-11-10 01:37:12,270] [pool-1-thread-7] Initializing /data/bassem/A PSF1.nd2: [testng] [2024-11-10 01:37:20,469] [pool-1-thread-4] Initializing /data/public/jonas/100217_OD122_001.nd2: [testng] [2024-11-10 01:37:22,665] [pool-1-thread-5] Initializing /data/david/_t4h f.nd2: [testng] [2024-11-10 01:37:23,971] [pool-1-thread-1] Initializing /data/yarden/KH2_Well1_4x.nd2: [testng] [2024-11-10 01:37:25,459] [pool-1-thread-2] Initializing /data/imagesc-76438/FirstFileUsed_Slide2-20-1_ChannelBrightfield_Seq0001.nd2: [testng] [2024-11-10 01:37:29,923] [pool-1-thread-7] Initializing /data/aryeh/BY_GFP-Mup1_mCHERRY-VPH1_10-7-2012_Meytal-Waiss_XYZT_GOOD.nd2: [testng] [2024-11-10 01:37:31,108] [pool-1-thread-3] Initializing /data/plaissue/4channel_Zseries_2XYpoints_withROIandBinaryLayer.nd2: [testng] [2024-11-10 01:37:33,302] [pool-1-thread-10] Initializing /data/public/jonas/movieSize/JJ_RNAi_hmr-1_001.nd2: [testng] [2024-11-10 01:37:38,351] [pool-1-thread-5] Initializing /data/strand/Reconstructed ND acquisition1.nd2: [testng] [2024-11-10 01:37:39,719] [pool-1-thread-4] Initializing /data/qa-7303/CTR011.nd2: [testng] [2024-11-10 01:37:41,027] [pool-1-thread-2] Initializing /data/qa-5042/8xyPoints_3channels_00_30m235_all8xyIdentified.nd2: [testng] [2024-11-10 01:37:43,281] [pool-1-thread-3] Initializing /data/qa-7572/cells.nd2: [testng] [2024-11-10 01:37:44,862] [pool-1-thread-7] Initializing /data/qa-5042/8xyPoints_3channels_00_30m001_latelyOnly7xyIdentified.nd2: [testng] [2024-11-10 01:37:48,306] [pool-1-thread-10] Initializing /data/christophe/A1N1_Veh_2D_B4S.nd2: [testng] [2024-11-10 01:38:26,220] [pool-1-thread-9] Initializing /data/kevin/100&210nm_coat_1.nd2: [testng] [2024-11-10 01:38:30,419] [pool-1-thread-4] Initializing /data/public/aryeh/but3_cont200-1.nd2: [testng] [2024-11-10 01:38:31,903] [pool-1-thread-5] Initializing /data/public/jonas/jonas_nd2Test/Exception_2.nd2: [testng] [2024-11-10 01:38:33,572] [pool-1-thread-1] Initializing /data/qa-31330/Hotel_02-Slot_01-Slide_01-Region_1_Stitched.nd2: [testng] [2024-11-10 01:38:36,268] [pool-1-thread-3] Initializing /data/qa-4973/CX3+MCh Long Ova(4Henry)002.nd2: [testng] [2024-11-10 01:38:37,588] [pool-1-thread-2] Initializing /data/public/aryeh/MeOh_high_fluo_007.nd2: [testng] [2024-11-10 01:38:39,848] [pool-1-thread-7] Initializing /data/michael/3 stage positions 2 ch opens out of order with LOCI .nd2: [testng] [2024-11-10 01:38:45,808] [pool-1-thread-5] Initializing /data/bernhard/962.nd2: [testng] [2024-11-10 01:38:48,682] [pool-1-thread-1] Initializing /data/michael/opens_skewed.nd2: [testng] [2024-11-10 01:38:52,210] [pool-1-thread-3] Initializing /data/karsten/100720104_TestglasSchott_MM63_C10h.nd2: [testng] [2024-11-10 01:38:54,773] [pool-1-thread-7] Initializing /data/stefanie/nd026_xy2.nd2: [testng] [2024-11-10 01:38:56,169] [pool-1-thread-2] Initializing /data/plaissue/4channel_Zseries_withROIlayer.nd2: [testng] [2024-11-10 01:38:57,343] [pool-1-thread-9] Initializing /data/venu/nd-two_channel-4.nd2: [testng] [2024-11-10 01:38:58,849] [pool-1-thread-12] Initializing /data/public/aryeh/MeOh_high_fluo_011.nd2: [testng] [2024-11-10 01:39:05,744] [pool-1-thread-2] Initializing /data/imagesc-76438/Slide2-20-2_Region0003_ChannelBrightfield_Seq0013.nd2: [testng] [2024-11-10 01:39:10,451] [pool-1-thread-7] Initializing /data/qa-7535/JJ_Controls_D_004.nd2: [testng] [2024-11-10 01:39:11,896] [pool-1-thread-9] Initializing /data/qa-10100/20141002_V019+AFP1052n3-005.nd2: [testng] [2024-11-10 01:39:13,194] [pool-1-thread-1] Initializing /data/qa-4958/521_t1.nd2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13091, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 61 minutes 15 seconds Finished: SUCCESS