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Started by upstream project "BIOFORMATS-test-repo" build number 251 originally caused by: Started by upstream project "Trigger" build number 275 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2928633862646127434.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39571_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:31:00,792 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:31:00,793 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 02:31:00,793 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:31:00,795 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:31:00,795 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:31:00,796 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:31:00,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:31:00,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:31:00,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:31:00,797 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:31:00,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:31:00,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:31:00,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:31:00,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:31:00,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:31:00,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:31:00,997 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:31:00,997 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:31:00,998 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:31:00,998 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:31:00,998 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 02:31:00,999 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 02:31:00,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-10 02:31:01,008] [main] java.version = 17.0.2 [testng] 02:31:01,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:31:01,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:01,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-10_02-31-01.log] [testng] 02:31:01,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-10 02:31:01,055] [main] testng.directory = /data [testng] [2024-11-10 02:31:01,055] [main] testng.configDirectory = /config [testng] [2024-11-10 02:31:01,064] [main] testng.multiplier = 1.0 [testng] [2024-11-10 02:31:01,065] [main] testng.in-memory = false [testng] [2024-11-10 02:31:01,065] [main] testng.allow-missing = false [testng] [2024-11-10 02:31:01,065] [main] user.language = en [testng] [2024-11-10 02:31:01,066] [main] user.country = ${user.country} [testng] [2024-11-10 02:31:01,066] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-10 02:31:54,406] [main] ---------------------------------------- [testng] [2024-11-10 02:31:54,407] [main] Total files: 19 [testng] [2024-11-10 02:31:54,407] [main] Scan time: 53.34 s (2807 ms/file) [testng] [2024-11-10 02:31:54,407] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-10 02:32:14,192] [pool-1-thread-1] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] 02:32:14,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:32:14,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:14,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-10_02-32-14.log] [testng] 02:32:14,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a7ffa8 - End of configuration. [testng] [2024-11-10 02:32:15,184] [pool-1-thread-12] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 02:32:15,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:32:15,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:15,186 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-10_02-32-15.log] [testng] 02:32:15,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d81beff - End of configuration. [testng] [2024-11-10 02:32:16,250] [pool-1-thread-11] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 02:32:16,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:32:16,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:16,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-10_02-32-16.log] [testng] 02:32:16,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6950d830 - End of configuration. [testng] [2024-11-10 02:32:17,031] [pool-1-thread-10] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] 02:32:17,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:32:17,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:17,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-10_02-32-17.log] [testng] 02:32:17,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dadb1aa - End of configuration. [testng] [2024-11-10 02:32:17,797] [pool-1-thread-9] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] 02:32:17,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:32:17,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:17,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-10_02-32-17.log] [testng] 02:32:17,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@256f65e8 - End of configuration. [testng] [2024-11-10 02:32:18,651] [pool-1-thread-8] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] 02:32:18,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:32:18,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:18,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-10_02-32-18.log] [testng] 02:32:18,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2df68f02 - End of configuration. [testng] [2024-11-10 02:32:19,498] [pool-1-thread-7] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 02:32:19,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:32:19,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:19,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-10_02-32-19.log] [testng] 02:32:19,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d39fb61 - End of configuration. [testng] [2024-11-10 02:32:20,326] [pool-1-thread-6] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] 02:32:20,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:32:20,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:20,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-10_02-32-20.log] [testng] 02:32:20,327 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2931ea13 - End of configuration. [testng] [2024-11-10 02:32:21,056] [pool-1-thread-5] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] 02:32:21,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:32:21,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:21,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-10_02-32-21.log] [testng] 02:32:21,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@131165e0 - End of configuration. [testng] [2024-11-10 02:32:21,845] [pool-1-thread-4] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] 02:32:21,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:32:21,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:21,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-10_02-32-21.log] [testng] 02:32:21,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77fddf40 - End of configuration. [testng] [2024-11-10 02:32:22,654] [pool-1-thread-3] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] 02:32:22,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:32:22,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:22,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-10_02-32-22.log] [testng] 02:32:22,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a6a89a9 - End of configuration. [testng] [2024-11-10 02:32:23,355] [pool-1-thread-2] Initializing /data/todd/movement-1.htm: [testng] 02:32:23,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:32:23,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:23,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-10_02-32-23.log] [testng] 02:32:23,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4336df27 - End of configuration. [testng] [2024-11-10 02:32:51,294] [pool-1-thread-10] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] [2024-11-10 02:33:02,111] [pool-1-thread-2] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] [2024-11-10 02:33:06,838] [pool-1-thread-8] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] [2024-11-10 02:33:31,522] [pool-1-thread-11] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] [2024-11-10 02:33:37,896] [pool-1-thread-2] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] [2024-11-10 02:33:45,527] [pool-1-thread-10] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 36 minutes 54 seconds Finished: SUCCESS