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Started by upstream project "BIOFORMATS-test-repo" build number 251 originally caused by: Started by upstream project "Trigger" build number 275 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins11658452176725831194.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39609_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:31:26,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:31:26,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 04:31:26,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:31:26,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:31:26,337 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:31:26,337 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:31:26,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:31:26,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:31:26,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:31:26,339 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:31:26,339 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:31:26,339 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:31:26,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:31:26,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:31:26,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:31:26,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:31:26,518 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:31:26,518 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:31:26,518 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:31:26,519 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:31:26,519 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 04:31:26,519 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 04:31:26,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-10 04:31:26,528] [main] java.version = 17.0.2 [testng] 04:31:26,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:31:26,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:31:26,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-10_04-31-26.log] [testng] 04:31:26,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-10 04:31:26,572] [main] testng.directory = /data [testng] [2024-11-10 04:31:26,572] [main] testng.configDirectory = /config [testng] [2024-11-10 04:31:26,580] [main] testng.multiplier = 1.0 [testng] [2024-11-10 04:31:26,581] [main] testng.in-memory = false [testng] [2024-11-10 04:31:26,581] [main] testng.allow-missing = false [testng] [2024-11-10 04:31:26,581] [main] user.language = en [testng] [2024-11-10 04:31:26,581] [main] user.country = ${user.country} [testng] [2024-11-10 04:31:26,581] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-10 04:34:13,633] [main] ---------------------------------------- [testng] [2024-11-10 04:34:13,634] [main] Total files: 15735 [testng] [2024-11-10 04:34:13,634] [main] Scan time: 167.052 s (10 ms/file) [testng] [2024-11-10 04:34:13,634] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-10 04:37:01,753] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 04:37:01,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:37:01,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:01,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-10_04-37-01.log] [testng] 04:37:01,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b6f402a - End of configuration. [testng] [2024-11-10 04:37:02,345] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 04:37:02,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:37:02,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:02,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-10_04-37-02.log] [testng] 04:37:02,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6032de85 - End of configuration. [testng] [2024-11-10 04:37:03,665] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 04:37:03,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:37:03,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:03,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-10_04-37-03.log] [testng] 04:37:03,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27ad1ced - End of configuration. [testng] [2024-11-10 04:37:04,282] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 04:37:04,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:37:04,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:04,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-10_04-37-04.log] [testng] 04:37:04,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aa3c357 - End of configuration. [testng] [2024-11-10 04:37:06,311] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 04:37:06,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:37:06,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:06,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-10_04-37-06.log] [testng] 04:37:06,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@578dd095 - End of configuration. [testng] [2024-11-10 04:37:07,268] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 04:37:07,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:37:07,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:07,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-10_04-37-07.log] [testng] 04:37:07,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d8c6b - End of configuration. [testng] [2024-11-10 04:37:08,040] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 04:37:08,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:37:08,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:08,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-10_04-37-08.log] [testng] 04:37:08,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6100e715 - End of configuration. [testng] [2024-11-10 04:37:09,011] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 04:37:09,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:37:09,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:09,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-10_04-37-09.log] [testng] 04:37:09,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e35d55 - End of configuration. [testng] [2024-11-10 04:37:09,749] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 04:37:09,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:37:09,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:09,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-10_04-37-09.log] [testng] 04:37:09,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fd67c27 - End of configuration. [testng] [2024-11-10 04:37:10,524] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 04:37:10,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:37:10,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:10,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-10_04-37-10.log] [testng] 04:37:10,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37789333 - End of configuration. [testng] [2024-11-10 04:37:11,157] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 04:37:11,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:37:11,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:11,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-10_04-37-11.log] [testng] 04:37:11,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74fa9a51 - End of configuration. [testng] [2024-11-10 04:37:12,108] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 04:37:12,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:37:12,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:12,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-10_04-37-12.log] [testng] 04:37:12,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6be434a4 - End of configuration. [testng] [2024-11-10 04:37:30,943] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-11-10 04:37:38,866] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-11-10 04:37:41,713] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-11-10 04:38:09,591] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-11-10 04:40:18,055] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-11-10 04:40:20,851] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-11-10 04:40:33,339] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-11-10 04:40:51,870] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-11-10 04:41:35,951] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-11-10 04:42:00,808] [pool-1-thread-4] Initializing /data/converted/michel/a.tif: [testng] [2024-11-10 04:42:09,310] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-11-10 04:42:24,119] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-11-10 04:42:40,415] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-11-10 04:43:00,238] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-11-10 04:43:18,083] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-11-10 04:43:39,212] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-11-10 04:43:43,452] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-11-10 04:43:48,589] [pool-1-thread-12] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-11-10 04:44:10,112] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-11-10 04:44:11,931] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-11-10 04:44:43,799] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-11-10 04:45:03,107] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-11-10 04:45:07,202] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-11-10 04:45:25,786] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-11-10 04:45:50,736] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-11-10 04:45:58,450] [pool-1-thread-7] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-11-10 04:46:08,193] [pool-1-thread-2] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-11-10 04:46:23,235] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-11-10 04:46:33,128] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-11-10 04:46:58,061] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-11-10 04:47:21,179] [pool-1-thread-12] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-11-10 04:47:55,360] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-11-10 04:48:17,776] [pool-1-thread-12] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-11-10 04:48:34,287] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-11-10 04:48:38,019] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-11-10 04:52:47,314] [pool-1-thread-6] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-11-10 04:53:48,156] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-11-10 04:54:35,707] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif: [testng] [2024-11-10 04:55:10,909] [pool-1-thread-4] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-11-10 04:55:13,518] [pool-1-thread-1] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-11-10 04:56:03,961] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-11-10 04:56:24,896] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-11-10 04:56:51,157] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-11-10 04:57:06,942] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-11-10 04:57:27,495] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-11-10 04:59:57,217] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-11-10 05:02:40,719] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-11-10 05:06:09,091] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-11-10 05:08:01,569] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-11-10 05:09:28,755] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-11-10 05:11:13,805] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-11-10 05:11:55,234] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-11-10 05:18:33,839] [pool-1-thread-10] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-11-10 05:19:29,422] [pool-1-thread-10] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-11-10 05:20:22,889] [pool-1-thread-10] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-11-10 05:20:26,565] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-11-10 05:21:59,339] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-11-10 05:24:09,294] [pool-1-thread-1] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-11-10 05:24:50,897] [pool-1-thread-1] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-11-10 05:25:14,892] [pool-1-thread-8] Initializing /data/scott/Slide133-04.tif: [testng] [2024-11-10 05:26:02,744] [pool-1-thread-8] Initializing /data/converted/converted/2chz.tif: [testng] [2024-11-10 05:26:10,144] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-11-10 05:29:15,087] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-11-10 05:31:33,637] [pool-1-thread-1] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-11-10 05:32:00,862] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-11-10 05:32:04,249] [pool-1-thread-8] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-11-10 05:32:47,364] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-11-10 05:33:10,485] [pool-1-thread-6] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-11-10 05:33:29,118] [pool-1-thread-5] Initializing /data/converted/michel/c.tif: [testng] [2024-11-10 05:34:00,446] [pool-1-thread-6] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-11-10 05:34:32,270] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-11-10 05:34:41,762] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-11-10 05:34:45,126] [pool-1-thread-8] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-11-10 05:35:46,667] [pool-1-thread-6] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-11-10 05:38:18,357] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-11-10 05:39:59,543] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-11-10 05:40:24,259] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-11-10 05:41:27,115] [pool-1-thread-10] Initializing /data/converted/dietmar/138.tif: [testng] [2024-11-10 05:42:51,838] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-11-10 05:44:37,457] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-11-10 05:47:21,889] [pool-1-thread-1] Initializing /data/converted/dietmar/137.tif: [testng] [2024-11-10 05:48:09,191] [pool-1-thread-5] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-11-10 05:48:23,987] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-11-10 05:49:43,051] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-11-10 05:51:03,472] [pool-1-thread-8] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-11-10 05:51:15,732] [pool-1-thread-5] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-11-10 05:51:36,969] [pool-1-thread-4] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-11-10 05:51:40,359] [pool-1-thread-6] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-11-10 05:51:57,076] [pool-1-thread-8] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-11-10 05:52:22,824] [pool-1-thread-6] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-11-10 05:52:27,908] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-11-10 05:52:41,009] [pool-1-thread-8] Initializing /data/scott/Slide133-11.tif: [testng] [2024-11-10 05:53:16,219] [pool-1-thread-6] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-11-10 05:53:24,858] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-11-10 05:53:33,012] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-11-10 05:54:37,296] [pool-1-thread-8] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-11-10 05:55:17,190] [pool-1-thread-8] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-11-10 05:55:37,488] [pool-1-thread-12] Initializing /data/converted/michel/d.tif: [testng] [2024-11-10 05:55:59,229] [pool-1-thread-7] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-11-10 05:56:27,255] [pool-1-thread-12] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-11-10 05:56:41,956] [pool-1-thread-7] Initializing /data/scott/Slide133-01.tif: [testng] [2024-11-10 05:57:03,551] [pool-1-thread-12] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-11-10 05:57:17,906] [pool-1-thread-4] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-11-10 05:57:23,700] [pool-1-thread-7] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-11-10 05:58:03,146] [pool-1-thread-7] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-11-10 05:58:28,584] [pool-1-thread-4] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-11-10 05:58:42,669] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-11-10 05:58:47,301] [pool-1-thread-7] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-11-10 05:59:15,970] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-11-10 05:59:28,774] [pool-1-thread-7] Initializing /data/converted/nicolas/image.tif: [testng] [2024-11-10 05:59:38,523] [pool-1-thread-9] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-11-10 05:59:53,052] [pool-1-thread-9] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-11-10 06:00:07,613] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 06:50:02,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:50:02,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:50:02,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-10_06-50-02.log] [testng] 06:50:02,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12485614 - End of configuration. [testng] 06:55:57,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:55:57,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:57,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-10_06-55-57.log] [testng] 06:55:57,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5039de18 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 144 minutes 37 seconds Finished: SUCCESS