Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 252
originally caused by:
 Started by upstream project "Trigger" build number 276
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1412297401234839235.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39655_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 00:22:10,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:22:10,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 00:22:10,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:22:10,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:22:10,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:22:10,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:22:10,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:22:10,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:22:10,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:22:10,622 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:22:10,622 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:22:10,622 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:22:10,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:22:10,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:22:10,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:22:10,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:22:10,891 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:22:10,891 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:22:10,891 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:22:10,891 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:22:10,891 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 00:22:10,892 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 00:22:10,892 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-11 00:22:10,902] [main] java.version = 1.8.0_342
   [testng] 00:22:10,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:22:10,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:10,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-11_00-22-10.log]
   [testng] 00:22:10,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-11-11 00:22:10,955] [main] testng.directory = /data
   [testng] [2024-11-11 00:22:10,955] [main] testng.configDirectory = /config
   [testng] [2024-11-11 00:22:10,967] [main] testng.multiplier = 1.0
   [testng] [2024-11-11 00:22:10,967] [main] testng.in-memory = false
   [testng] [2024-11-11 00:22:10,967] [main] testng.allow-missing = false
   [testng] [2024-11-11 00:22:10,967] [main] user.language = fr
   [testng] [2024-11-11 00:22:10,967] [main] user.country = FR
   [testng] [2024-11-11 00:22:10,967] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-11-11 00:22:36,982] [main] ----------------------------------------
   [testng] [2024-11-11 00:22:36,982] [main] Total files: 315
   [testng] [2024-11-11 00:22:36,982] [main] Scan time: 26.014 s (82 ms/file)
   [testng] [2024-11-11 00:22:36,982] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 192 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-11 00:36:08,937] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/zebra shg.oir: 
   [testng] 00:36:08,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:36:08,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:08,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-11_00-36-08.log]
   [testng] 00:36:08,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55d57a69 - End of configuration.
   [testng] [2024-11-11 00:36:10,913] [pool-1-thread-12] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: 
   [testng] 00:36:10,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 00:36:10,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:10,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-11_00-36-10.log]
   [testng] 00:36:10,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aeca8a1 - End of configuration.
   [testng] [2024-11-11 00:36:12,154] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: 
   [testng] 00:36:12,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 00:36:12,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:12,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-11_00-36-12.log]
   [testng] 00:36:12,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@188d5ead - End of configuration.
   [testng] [2024-11-11 00:36:12,684] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: 
   [testng] 00:36:12,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:36:12,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:12,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-11_00-36-12.log]
   [testng] 00:36:12,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21bdd0ae - End of configuration.
   [testng] [2024-11-11 00:36:13,211] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: 
   [testng] 00:36:13,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:36:13,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:13,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-11_00-36-13.log]
   [testng] 00:36:13,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3683ef - End of configuration.
   [testng] [2024-11-11 00:36:14,125] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: 
   [testng] 00:36:14,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:36:14,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:14,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-11_00-36-14.log]
   [testng] 00:36:14,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52a148b2 - End of configuration.
   [testng] [2024-11-11 00:36:15,417] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: 
   [testng] 00:36:15,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:36:15,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:15,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-11_00-36-15.log]
   [testng] 00:36:15,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6086135e - End of configuration.
   [testng] [2024-11-11 00:36:15,465] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.ome.tif: 
   [testng] 00:36:15,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:36:15,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:15,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-11_00-36-15.log]
   [testng] 00:36:15,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aaa34e1 - End of configuration.
   [testng] [2024-11-11 00:36:16,223] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: 
   [testng] 00:36:16,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:36:16,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:16,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-11_00-36-16.log]
   [testng] 00:36:16,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a58e37c - End of configuration.
   [testng] [2024-11-11 00:36:16,825] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.oir: 
   [testng] 00:36:16,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:36:16,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:16,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-11_00-36-16.log]
   [testng] 00:36:16,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28e2470f - End of configuration.
   [testng] [2024-11-11 00:36:17,313] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: 
   [testng] 00:36:17,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:36:17,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:17,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-11_00-36-17.log]
   [testng] 00:36:17,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fe114d4 - End of configuration.
   [testng] [2024-11-11 00:36:18,495] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: 
   [testng] 00:36:18,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:36:18,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:18,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-11_00-36-18.log]
   [testng] 00:36:18,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ef3b00b - End of configuration.
   [testng] [2024-11-11 00:36:20,996] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: 
   [testng] [2024-11-11 00:36:25,420] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: 
   [testng] [2024-11-11 00:36:27,358] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: 
   [testng] [2024-11-11 00:38:33,585] [pool-1-thread-6] Initializing /data/qa-17919/f10187.oir: 
   [testng] [2024-11-11 00:38:55,542] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.ome.tif: 
   [testng] [2024-11-11 00:38:56,217] [pool-1-thread-3] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: 
   [testng] [2024-11-11 00:38:56,672] [pool-1-thread-8] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: 
   [testng] [2024-11-11 00:38:57,429] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: 
   [testng] [2024-11-11 00:39:01,275] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: 
   [testng] [2024-11-11 00:39:01,847] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-venus stack.tif: 
   [testng] [2024-11-11 00:39:02,668] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: 
   [testng] [2024-11-11 00:39:06,806] [pool-1-thread-11] Initializing /data/qa-17270/image1.oir: 
   [testng] [2024-11-11 00:39:08,153] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: 
   [testng] [2024-11-11 00:39:10,640] [pool-1-thread-3] Initializing /data/qa-21508/Stitch_A01_G008.oir: 
   [testng] [2024-11-11 00:39:11,188] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: 
   [testng] [2024-11-11 00:39:12,093] [pool-1-thread-4] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: 
   [testng] [2024-11-11 00:39:12,889] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: 
   [testng] [2024-11-11 00:39:13,529] [pool-1-thread-2] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: 
   [testng] [2024-11-11 00:39:19,354] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: 
   [testng] [2024-11-11 00:39:20,012] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: 
   [testng] [2024-11-11 00:39:22,413] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: 
   [testng] [2024-11-11 00:39:23,132] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: 
   [testng] [2024-11-11 00:39:27,987] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-1.tif: 
   [testng] [2024-11-11 00:39:30,551] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.oir: 
   [testng] [2024-11-11 00:39:31,087] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: 
   [testng] [2024-11-11 00:39:32,808] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: 
   [testng] [2024-11-11 00:39:33,433] [pool-1-thread-4] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: 
   [testng] [2024-11-11 00:39:34,954] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] [2024-11-11 00:39:37,095] [pool-1-thread-10] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: 
   [testng] [2024-11-11 00:39:40,878] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.ome.tif: 
   [testng] [2024-11-11 00:39:41,773] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: 
   [testng] [2024-11-11 00:39:46,325] [pool-1-thread-5] Initializing /data/qa-17335/1.oir: 
   [testng] [2024-11-11 00:39:48,808] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir: 
   [testng] [2024-11-11 00:39:49,785] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: 
   [testng] [2024-11-11 00:39:50,574] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: 
   [testng] [2024-11-11 00:39:51,516] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: 
   [testng] [2024-11-11 00:39:58,946] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: 
   [testng] [2024-11-11 00:40:05,686] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.ome.tif: 
   [testng] [2024-11-11 00:40:13,399] [pool-1-thread-7] Initializing /data/cudmore/20190401__0005.oir: 
   [testng] [2024-11-11 00:40:27,305] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.oir: 
   [testng] [2024-11-11 00:40:28,135] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: 
   [testng] [2024-11-11 00:40:30,678] [pool-1-thread-8] Initializing /data/qa-17331/60x zstack RS.oir: 
   [testng] [2024-11-11 00:40:39,028] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: 
   [testng] [2024-11-11 00:40:41,444] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: 
   [testng] [2024-11-11 00:40:42,835] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: 
   [testng] [2024-11-11 00:40:49,589] [pool-1-thread-5] Initializing /data/qa-17270/image1.ome.tif: 
   [testng] [2024-11-11 00:40:51,051] [pool-1-thread-3] Initializing /data/olympus/XYZt.ome.tif: 
   [testng] [2024-11-11 00:40:51,840] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: 
   [testng] [2024-11-11 00:40:52,540] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: 
   [testng] [2024-11-11 00:41:15,324] [pool-1-thread-11] Initializing /data/olympus/Clipboard-XYZt.tif: 
   [testng] [2024-11-11 00:41:18,970] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: 
   [testng] [2024-11-11 00:41:19,967] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0024.oir: 
   [testng] [2024-11-11 00:41:22,076] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.oir: 
   [testng] [2024-11-11 00:41:26,376] [pool-1-thread-2] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: 
   [testng] [2024-11-11 00:41:27,526] [pool-1-thread-11] Initializing /data/qa-17409/Stitch_A01_G001.oir: 
   [testng] [2024-11-11 00:41:29,893] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.oir: 
   [testng] [2024-11-11 00:41:33,344] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: 
   [testng] [2024-11-11 00:41:36,819] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0019.oir: 
   [testng] [2024-11-11 00:41:39,522] [pool-1-thread-5] Initializing /data/qa-17293/Clipboard.tif: 
   [testng] [2024-11-11 00:41:40,149] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: 
   [testng] [2024-11-11 00:41:42,820] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: 
   [testng] [2024-11-11 00:41:43,512] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: 
   [testng] [2024-11-11 00:41:47,317] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: 
   [testng] [2024-11-11 00:41:48,940] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: 
   [testng] [2024-11-11 00:41:50,806] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: 
   [testng] [2024-11-11 00:41:53,429] [pool-1-thread-5] Initializing /data/olympus/2017-04-20/Clipboard.tif: 
   [testng] [2024-11-11 00:41:54,680] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif: 
   [testng] [2024-11-11 00:41:56,580] [pool-1-thread-2] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: 
   [testng] [2024-11-11 00:42:00,853] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: 
   [testng] [2024-11-11 00:42:02,572] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.oir: 
   [testng] [2024-11-11 00:42:04,183] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: 
   [testng] [2024-11-11 00:42:04,860] [pool-1-thread-5] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: 
   [testng] [2024-11-11 00:42:07,626] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.oir: 
   [testng] [2024-11-11 00:42:09,529] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: 
   [testng] [2024-11-11 00:42:10,406] [pool-1-thread-3] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: 
   [testng] [2024-11-11 00:42:15,537] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0019.oir: 
   [testng] [2024-11-11 00:42:18,567] [pool-1-thread-3] Initializing /data/olympus/Stitched_XYZ.vsi: 
   [testng] [2024-11-11 00:42:20,830] [pool-1-thread-2] Initializing /data/olympus/XYZt.oir: 
   [testng] [2024-11-11 00:42:32,726] [pool-1-thread-5] Initializing /data/qa-17331/Clipboard.tif: 
   [testng] [2024-11-11 00:42:37,333] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: 
   [testng] [2024-11-11 00:42:40,250] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: 
   [testng] [2024-11-11 00:42:42,229] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: 
   [testng] [2024-11-11 00:42:43,260] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: 
   [testng] [2024-11-11 00:42:44,786] [pool-1-thread-5] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: 
   [testng] [2024-11-11 00:42:48,340] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: 
   [testng] [2024-11-11 00:42:50,801] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: 
   [testng] [2024-11-11 00:42:52,765] [pool-1-thread-1] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: 
   [testng] [2024-11-11 00:42:56,613] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: 
   [testng] [2024-11-11 00:42:58,551] [pool-1-thread-11] Initializing /data/olympus/calcium sparks.jpg: 
   [testng] [2024-11-11 00:43:00,857] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: 
   [testng] [2024-11-11 00:43:03,738] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.oir: 
   [testng] [2024-11-11 00:43:05,995] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: 
   [testng] [2024-11-11 00:43:09,465] [pool-1-thread-5] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: 
   [testng] [2024-11-11 00:43:13,047] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: 
   [testng] [2024-11-11 00:43:16,504] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: 
   [testng] [2024-11-11 00:43:18,895] [pool-1-thread-8] Initializing /data/olympus/calcium sparks_XYt.ome.tif: 
   [testng] [2024-11-11 00:43:23,334] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: 
   [testng] [2024-11-11 00:43:24,393] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.ome.tif: 
   [testng] [2024-11-11 00:43:27,905] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.ome.tif: 
   [testng] [2024-11-11 00:43:33,044] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: 
   [testng] [2024-11-11 00:43:34,227] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: 
   [testng] [2024-11-11 00:43:35,855] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: 
   [testng] [2024-11-11 00:43:36,687] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: 
   [testng] [2024-11-11 00:43:39,055] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: 
   [testng] [2024-11-11 00:43:45,261] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: 
   [testng] [2024-11-11 00:43:50,314] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: 
   [testng] [2024-11-11 00:43:52,229] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: 
   [testng] [2024-11-11 00:43:53,275] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: 
   [testng] [2024-11-11 00:43:55,807] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: 
   [testng] [2024-11-11 00:43:58,659] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.ome.tif: 
   [testng] [2024-11-11 00:44:02,787] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: 
   [testng] [2024-11-11 00:44:07,118] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: 
   [testng] [2024-11-11 00:44:08,632] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: 
   [testng] [2024-11-11 00:44:12,544] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-image1.tif: 
   [testng] [2024-11-11 00:44:14,203] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: 
   [testng] [2024-11-11 00:44:15,446] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: 
   [testng] [2024-11-11 00:44:17,580] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: 
   [testng] [2024-11-11 00:44:19,162] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: 
   [testng] [2024-11-11 00:44:26,125] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: 
   [testng] [2024-11-11 00:44:28,056] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: 
   [testng] [2024-11-11 00:44:31,028] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: 
   [testng] [2024-11-11 00:44:32,229] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: 
   [testng] [2024-11-11 00:44:46,821] [pool-1-thread-5] Initializing /data/olympus/XYZt.vsi: 
   [testng] [2024-11-11 00:44:49,486] [pool-1-thread-11] Initializing /data/qa-17270/stack1.ome.tif: 
   [testng] [2024-11-11 00:44:51,912] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: 
   [testng] [2024-11-11 00:44:53,862] [pool-1-thread-2] Initializing /data/public/etienne/venus stack.ome.tif: 
   [testng] [2024-11-11 00:44:55,571] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: 
   [testng] [2024-11-11 00:44:57,015] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: 
   [testng] [2024-11-11 00:44:58,160] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: 
   [testng] [2024-11-11 00:45:04,603] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: 
   [testng] [2024-11-11 00:45:08,998] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] [2024-11-11 00:45:11,028] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0006.oir: 
   [testng] [2024-11-11 00:45:12,756] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: 
   [testng] [2024-11-11 00:45:16,599] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.oir: 
   [testng] [2024-11-11 00:45:23,334] [pool-1-thread-10] Initializing /data/qa-17270/stack1.oir: 
   [testng] [2024-11-11 00:45:28,611] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: 
   [testng] [2024-11-11 00:45:49,810] [pool-1-thread-5] Initializing /data/qa-17917/f10010.oir: 
   [testng] [2024-11-11 00:46:45,055] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: 
   [testng] [2024-11-11 00:46:46,045] [pool-1-thread-6] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: 
   [testng] [2024-11-11 00:46:51,231] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] [2024-11-11 00:46:52,606] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: 
   [testng] [2024-11-11 00:46:59,956] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.vsi: 
   [testng] [2024-11-11 00:47:05,638] [pool-1-thread-6] Initializing /data/olympus/calcium sparks_XYt.oir: 
   [testng] [2024-11-11 00:47:08,846] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: 
   [testng] [2024-11-11 00:47:11,654] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: 
   [testng] [2024-11-11 00:47:13,655] [pool-1-thread-1] Initializing /data/qa-17409/Clipboard.tif: 
   [testng] [2024-11-11 00:47:22,080] [pool-1-thread-2] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: 
   [testng] [2024-11-11 00:47:27,053] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: 
   [testng] [2024-11-11 00:47:32,863] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: 
   [testng] [2024-11-11 00:47:45,256] [pool-1-thread-11] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: 
   [testng] [2024-11-11 00:47:46,871] [pool-1-thread-1] Initializing /data/qa-17335/1.ome.tif: 
   [testng] [2024-11-11 00:47:52,601] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: 
   [testng] [2024-11-11 00:47:54,815] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: 
   [testng] [2024-11-11 00:48:04,270] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: 
   [testng] [2024-11-11 00:48:06,571] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: 
   [testng] [2024-11-11 00:48:13,072] [pool-1-thread-6] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: 
   [testng] [2024-11-11 00:48:44,117] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: 
   [testng] [2024-11-11 00:51:00,346] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: 
   [testng] [2024-11-11 00:51:01,024] [pool-1-thread-2] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: 
   [testng] [2024-11-11 00:51:02,429] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: 
   [testng] [2024-11-11 00:51:04,792] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: 
   [testng] [2024-11-11 00:51:11,703] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: 
   [testng] [2024-11-11 00:51:12,991] [pool-1-thread-2] Initializing /data/public/etienne/venus stack.oir: 
   [testng] [2024-11-11 00:51:15,419] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: 
   [testng] [2024-11-11 00:51:16,477] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: 
   [testng] [2024-11-11 00:51:17,954] [pool-1-thread-1] Initializing /data/qa-17331/60x zstack RS.ome.tif: 
   [testng] [2024-11-11 00:51:19,278] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-stack1.tif: 
   [testng] [2024-11-11 00:51:24,502] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-alexa488.tif: 
   [testng] [2024-11-11 00:51:26,188] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: 
   [testng] [2024-11-11 00:51:29,486] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: 
   [testng] [2024-11-11 00:52:03,067] [pool-1-thread-8] Initializing /data/qa-17922/example_multipart.oir: 
   [testng] [2024-11-11 00:53:17,761] [pool-1-thread-4] Initializing /data/qa-16871/Clipboard.tif: 
   [testng] [2024-11-11 00:53:21,941] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: 
   [testng] [2024-11-11 00:53:28,258] [pool-1-thread-11] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: 
   [testng] [2024-11-11 00:53:33,666] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: 
   [testng] [2024-11-11 00:53:38,340] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/Clipboard.tif: 
   [testng] [2024-11-11 00:53:38,968] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: 
   [testng] [2024-11-11 00:53:41,893] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2.oir: 
   [testng] [2024-11-11 00:53:47,330] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: 
   [testng] [2024-11-11 00:53:50,614] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 10176, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 72 minutes 57 seconds
Finished: SUCCESS