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Started by upstream project "BIOFORMATS-test-repo" build number 252 originally caused by: Started by upstream project "Trigger" build number 276 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5879288777792301744.sh + '[' pict = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_39695_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:58:57,390 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:58:57,391 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:58:57,391 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:58:57,392 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:58:57,392 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:58:57,393 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:58:57,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:58:57,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:58:57,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:58:57,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:58:57,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:58:57,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:58:57,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:58:57,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:58:57,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:58:57,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:58:57,647 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:58:57,647 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:58:57,647 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:58:57,647 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:58:57,647 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:58:57,648 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:58:57,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-11 00:58:57,657] [main] java.version = 1.8.0_342 [testng] 00:58:57,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:58:57,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:57,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-11_00-58-57.log] [testng] 00:58:57,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-11 00:58:57,708] [main] testng.directory = /data [testng] [2024-11-11 00:58:57,708] [main] testng.configDirectory = /config [testng] [2024-11-11 00:58:57,720] [main] testng.multiplier = 1.0 [testng] [2024-11-11 00:58:57,720] [main] testng.in-memory = false [testng] [2024-11-11 00:58:57,720] [main] testng.allow-missing = false [testng] [2024-11-11 00:58:57,720] [main] user.language = fr [testng] [2024-11-11 00:58:57,720] [main] user.country = FR [testng] [2024-11-11 00:58:57,720] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-11 00:58:58,551] [main] ---------------------------------------- [testng] [2024-11-11 00:58:58,551] [main] Total files: 25 [testng] [2024-11-11 00:58:58,551] [main] Scan time: 0.831 s (33 ms/file) [testng] [2024-11-11 00:58:58,551] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-11 00:59:05,572] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 00:59:05,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:59:05,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:05,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-11_00-59-05.log] [testng] 00:59:05,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eefe8cb - End of configuration. [testng] [2024-11-11 00:59:05,843] [pool-1-thread-12] Initializing /data/jqd/mire32.pict: [testng] 00:59:05,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:59:05,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:05,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-11_00-59-05.log] [testng] 00:59:05,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43c32ecb - End of configuration. [testng] [2024-11-11 00:59:06,074] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 00:59:06,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:59:06,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:06,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-11_00-59-06.log] [testng] 00:59:06,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@709a9e28 - End of configuration. [testng] [2024-11-11 00:59:06,221] [pool-1-thread-10] Initializing /data/misc/planet2.pict: [testng] 00:59:06,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:59:06,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:06,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-11_00-59-06.log] [testng] 00:59:06,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8f90dd - End of configuration. [testng] [2024-11-11 00:59:06,395] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 00:59:06,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:59:06,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:06,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-11_00-59-06.log] [testng] 00:59:06,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9832327 - End of configuration. [testng] [2024-11-11 00:59:06,762] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] 00:59:06,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:59:06,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:06,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-11_00-59-06.log] [testng] 00:59:06,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@269cca53 - End of configuration. [testng] [2024-11-11 00:59:06,814] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] 00:59:06,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:59:06,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:06,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-11_00-59-06.log] [testng] 00:59:06,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fedd6f4 - End of configuration. [testng] [2024-11-11 00:59:07,195] [pool-1-thread-6] Initializing /data/brian/images/RED.PCT: [testng] 00:59:07,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:59:07,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:07,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-11_00-59-07.log] [testng] 00:59:07,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57062cb - End of configuration. [testng] [2024-11-11 00:59:07,342] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:59:07,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:59:07,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:07,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-11_00-59-07.log] [testng] 00:59:07,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c927d45 - End of configuration. [testng] [2024-11-11 00:59:07,471] [pool-1-thread-4] Initializing /data/misc/swlogo.pict: [testng] 00:59:07,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:59:07,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:07,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-11_00-59-07.log] [testng] 00:59:07,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56db8e76 - End of configuration. [testng] [2024-11-11 00:59:07,716] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 00:59:07,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:59:07,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:07,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-11_00-59-07.log] [testng] 00:59:07,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@381ebf6b - End of configuration. [testng] [2024-11-11 00:59:08,058] [pool-1-thread-2] Initializing /data/wayne/PotatoMeristem.pict: [testng] 00:59:08,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:59:08,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:08,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-11_00-59-08.log] [testng] 00:59:08,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f758c0b - End of configuration. [testng] [2024-11-11 00:59:10,443] [pool-1-thread-8] Initializing /data/brian/images/BLK.PCT: [testng] [2024-11-11 00:59:11,546] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-11-11 00:59:11,686] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT: [testng] [2024-11-11 00:59:11,851] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-11-11 00:59:12,129] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT: [testng] [2024-11-11 00:59:12,295] [pool-1-thread-9] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-11-11 00:59:12,458] [pool-1-thread-6] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-11-11 00:59:12,585] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-11-11 00:59:12,820] [pool-1-thread-1] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-11-11 00:59:12,948] [pool-1-thread-7] Initializing /data/jqd/mireSixteen.pict: [testng] [2024-11-11 00:59:13,109] [pool-1-thread-10] Initializing /data/brian/images/BLU.PCT: [testng] [2024-11-11 00:59:13,475] [pool-1-thread-3] Initializing /data/misc/planet.pict: [testng] [2024-11-11 00:59:15,564] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 23 seconds Finished: SUCCESS