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Started by upstream project "BIOFORMATS-test-repo" build number 252 originally caused by: Started by upstream project "Trigger" build number 276 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15530981060738059930.sh + '[' psd = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_39777_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:50:50,279 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:50:50,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:50:50,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:50:50,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:50:50,282 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:50:50,282 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:50:50,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:50:50,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:50:50,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:50:50,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:50:50,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:50:50,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:50:50,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:50:50,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:50:50,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:50:50,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:50:50,542 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:50:50,542 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:50:50,542 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:50:50,543 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:50:50,543 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:50:50,544 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:50:50,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-11 04:50:50,554] [main] java.version = 1.8.0_342 [testng] 04:50:50,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:50:50,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:50:50,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-11_04-50-50.log] [testng] 04:50:50,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-11 04:50:50,613] [main] testng.directory = /data [testng] [2024-11-11 04:50:50,613] [main] testng.configDirectory = /config [testng] [2024-11-11 04:50:50,625] [main] testng.multiplier = 1.0 [testng] [2024-11-11 04:50:50,626] [main] testng.in-memory = false [testng] [2024-11-11 04:50:50,626] [main] testng.allow-missing = false [testng] [2024-11-11 04:50:50,626] [main] user.language = fr [testng] [2024-11-11 04:50:50,626] [main] user.country = FR [testng] [2024-11-11 04:50:50,626] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-11 04:50:51,877] [main] ---------------------------------------- [testng] [2024-11-11 04:50:51,877] [main] Total files: 18 [testng] [2024-11-11 04:50:51,877] [main] Scan time: 1.251 s (69 ms/file) [testng] [2024-11-11 04:50:51,877] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-11 04:51:00,864] [pool-1-thread-1] Initializing /data/ascb/423.psd: [testng] 04:51:00,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:51:00,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:00,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-11_04-51-00.log] [testng] 04:51:00,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ea59f4a - End of configuration. [testng] [2024-11-11 04:51:01,294] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 04:51:01,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:51:01,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:01,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-11_04-51-01.log] [testng] 04:51:01,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a783e83 - End of configuration. [testng] [2024-11-11 04:51:01,849] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 04:51:01,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:51:01,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:01,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-11_04-51-01.log] [testng] 04:51:01,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@485359cd - End of configuration. [testng] [2024-11-11 04:51:02,278] [pool-1-thread-10] Initializing /data/big-images/8kx8k.psd: [testng] 04:51:02,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:51:02,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:02,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-11_04-51-02.log] [testng] 04:51:02,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1540e442 - End of configuration. [testng] [2024-11-11 04:51:02,654] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 04:51:02,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:51:02,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:02,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-11_04-51-02.log] [testng] 04:51:02,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@751bf076 - End of configuration. [testng] [2024-11-11 04:51:03,013] [pool-1-thread-8] Initializing /data/misc/glossy_buttons.psd: [testng] 04:51:03,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:51:03,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:03,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-11_04-51-03.log] [testng] 04:51:03,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5655bece - End of configuration. [testng] [2024-11-11 04:51:03,430] [pool-1-thread-7] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 04:51:03,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:51:03,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:03,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-11_04-51-03.log] [testng] 04:51:03,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6822971e - End of configuration. [testng] [2024-11-11 04:51:03,797] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd: [testng] 04:51:03,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:51:03,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:03,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-11_04-51-03.log] [testng] 04:51:03,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d155c87 - End of configuration. [testng] [2024-11-11 04:51:04,163] [pool-1-thread-5] Initializing /data/misc/smilie.psd: [testng] 04:51:04,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:51:04,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:04,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-11_04-51-04.log] [testng] 04:51:04,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29e10f29 - End of configuration. [testng] [2024-11-11 04:51:04,536] [pool-1-thread-4] Initializing /data/misc/venus_composite_8bit.psd: [testng] 04:51:04,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:51:04,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:04,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-11_04-51-04.log] [testng] 04:51:04,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4000eeec - End of configuration. [testng] [2024-11-11 04:51:04,940] [pool-1-thread-3] Initializing /data/ascb/607x.psd: [testng] 04:51:04,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:51:04,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:04,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-11_04-51-04.log] [testng] 04:51:04,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f76d5d5 - End of configuration. [testng] [2024-11-11 04:51:05,429] [pool-1-thread-2] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 04:51:05,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:51:05,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:51:05,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-11_04-51-05.log] [testng] 04:51:05,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377701a7 - End of configuration. [testng] [2024-11-11 04:51:11,326] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] [2024-11-11 04:51:11,756] [pool-1-thread-8] Initializing /data/misc/venus_composite.psd: [testng] [2024-11-11 04:51:12,188] [pool-1-thread-7] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-11-11 04:51:12,595] [pool-1-thread-5] Initializing /data/cris/house.tif: [testng] [2024-11-11 04:51:14,030] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd: [testng] [2024-11-11 04:51:14,581] [pool-1-thread-11] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 38 seconds Finished: SUCCESS