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Started by upstream project "BIOFORMATS-test-repo" build number 253 originally caused by: Started by upstream project "Trigger" build number 277 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins470229226274514052.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39850_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:51:12,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:51:12,154 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:51:12,154 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:51:12,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:51:12,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:51:12,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:51:12,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:51:12,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:51:12,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:51:12,157 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:51:12,157 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:51:12,157 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:51:12,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:51:12,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:51:12,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:51:12,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:51:12,354 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:51:12,354 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:51:12,354 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:51:12,355 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:51:12,355 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:51:12,355 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:51:12,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-12 00:51:12,364] [main] java.version = 11.0.16 [testng] 00:51:12,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:51:12,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:12,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-12_00-51-12.log] [testng] 00:51:12,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-12 00:51:12,413] [main] testng.directory = /data [testng] [2024-11-12 00:51:12,413] [main] testng.configDirectory = /config [testng] [2024-11-12 00:51:12,423] [main] testng.multiplier = 1.0 [testng] [2024-11-12 00:51:12,424] [main] testng.in-memory = false [testng] [2024-11-12 00:51:12,425] [main] testng.allow-missing = false [testng] [2024-11-12 00:51:12,425] [main] user.language = en [testng] [2024-11-12 00:51:12,425] [main] user.country = ${user.country} [testng] [2024-11-12 00:51:12,425] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-12 00:51:52,887] [main] ---------------------------------------- [testng] [2024-11-12 00:51:52,887] [main] Total files: 259 [testng] [2024-11-12 00:51:52,887] [main] Scan time: 40.462 s (156 ms/file) [testng] [2024-11-12 00:51:52,887] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-12 01:00:21,562] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] 01:00:21,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:00:21,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:21,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-12_01-00-21.log] [testng] 01:00:21,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ddc6429 - End of configuration. [testng] [2024-11-12 01:00:21,900] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib: [testng] 01:00:21,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:00:21,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:21,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-12_01-00-21.log] [testng] 01:00:21,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f26f3e1 - End of configuration. [testng] [2024-11-12 01:00:22,264] [pool-1-thread-11] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 01:00:22,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:00:22,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:22,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-12_01-00-22.log] [testng] 01:00:22,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fc989cd - End of configuration. [testng] [2024-11-12 01:00:23,312] [pool-1-thread-10] Initializing /data/marc/V0606J.oib: [testng] 01:00:23,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:00:23,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:23,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-12_01-00-23.log] [testng] 01:00:23,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bbc252 - End of configuration. [testng] [2024-11-12 01:00:25,442] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] 01:00:25,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:00:25,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-12_01-00-25.log] [testng] 01:00:25,443 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13880bfe - End of configuration. [testng] [2024-11-12 01:00:25,591] [pool-1-thread-8] Initializing /data/karl/Image0009.oib: [testng] 01:00:25,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:00:25,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:25,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-12_01-00-25.log] [testng] 01:00:25,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f5a20f2 - End of configuration. [testng] [2024-11-12 01:00:26,313] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] 01:00:26,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:00:26,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:26,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-12_01-00-26.log] [testng] 01:00:26,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4392ffdd - End of configuration. [testng] [2024-11-12 01:00:27,019] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] 01:00:27,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:00:27,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:27,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-12_01-00-27.log] [testng] 01:00:27,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0bd8bc - End of configuration. [testng] [2024-11-12 01:00:28,002] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF: [testng] 01:00:28,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:00:28,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:28,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-12_01-00-28.log] [testng] 01:00:28,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1013af70 - End of configuration. [testng] [2024-11-12 01:00:41,312] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] 01:00:41,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:00:41,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:41,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-12_01-00-41.log] [testng] 01:00:41,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7995aca8 - End of configuration. [testng] [2024-11-12 01:00:41,548] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] 01:00:41,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:00:41,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:41,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-12_01-00-41.log] [testng] 01:00:41,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f3dc6ee - End of configuration. [testng] [2024-11-12 01:00:41,789] [pool-1-thread-2] Initializing /data/brian/Lambda10nm.oib: [testng] 01:00:41,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:00:41,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:41,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-12_01-00-41.log] [testng] 01:00:41,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c5c4001 - End of configuration. [testng] [2024-11-12 01:00:44,758] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-12 01:00:45,775] [pool-1-thread-8] Initializing /data/glen/simulstack.oif: [testng] [2024-11-12 01:00:47,151] [pool-1-thread-2] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-12 01:00:52,783] [pool-1-thread-3] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-12 01:00:53,215] [pool-1-thread-12] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-12 01:00:53,510] [pool-1-thread-1] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-12 01:00:54,098] [pool-1-thread-11] Initializing /data/glen/simulstack.oib: [testng] [2024-11-12 01:00:54,659] [pool-1-thread-6] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-12 01:00:55,364] [pool-1-thread-7] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-12 01:00:57,723] [pool-1-thread-9] Initializing /data/david/Image0016.oif: [testng] [2024-11-12 01:00:58,497] [pool-1-thread-12] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-12 01:01:02,761] [pool-1-thread-3] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-12 01:01:05,375] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-12 01:01:06,675] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-12 01:01:07,157] [pool-1-thread-4] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-12 01:01:07,579] [pool-1-thread-1] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-12 01:01:08,291] [pool-1-thread-6] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-12 01:01:11,160] [pool-1-thread-10] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-12 01:01:12,868] [pool-1-thread-6] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-12 01:01:12,951] [pool-1-thread-4] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-12 01:01:24,314] [pool-1-thread-7] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-12 01:01:25,889] [pool-1-thread-11] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-12 01:01:43,054] [pool-1-thread-1] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-12 01:01:45,211] [pool-1-thread-6] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-12 01:01:46,264] [pool-1-thread-3] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-12 01:01:48,864] [pool-1-thread-10] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-12 01:01:51,896] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-12 01:01:55,864] [pool-1-thread-6] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-12 01:02:49,827] [pool-1-thread-3] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-12 01:03:05,848] [pool-1-thread-9] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-12 01:04:51,686] [pool-1-thread-1] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-12 01:04:55,193] [pool-1-thread-10] Initializing /data/allan/62909#1.oib: [testng] [2024-11-12 01:04:55,953] [pool-1-thread-7] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-12 01:05:04,710] [pool-1-thread-10] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-12 01:05:20,998] [pool-1-thread-1] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-12 01:05:26,456] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-12 01:08:08,611] [pool-1-thread-9] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-12 01:08:12,269] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-12 01:08:57,319] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-12 01:09:05,441] [pool-1-thread-9] Initializing /data/jae/Image0001.oib: [testng] [2024-11-12 01:09:13,621] [pool-1-thread-9] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-12 01:09:58,354] [pool-1-thread-9] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-12 01:10:07,068] [pool-1-thread-9] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-12 01:11:26,412] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-12 01:11:35,154] [pool-1-thread-9] Initializing /data/michael/CELL3.oib: [testng] [2024-11-12 01:11:42,446] [pool-1-thread-9] Initializing /data/simon/never_worked.oib: [testng] [2024-11-12 01:11:50,014] [pool-1-thread-9] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-12 01:12:24,443] [pool-1-thread-9] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-12 01:12:32,430] [pool-1-thread-9] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-12 01:12:41,662] [pool-1-thread-9] Initializing /data/johannes/step1.bmp: [testng] [2024-11-12 01:12:45,355] [pool-1-thread-9] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-12 01:12:53,882] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-12 01:13:01,457] [pool-1-thread-9] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-12 01:13:37,192] [pool-1-thread-9] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-12 01:13:46,461] [pool-1-thread-9] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-12 01:18:14,434] [pool-1-thread-8] Initializing /data/glen/111407.oif: [testng] [2024-11-12 01:23:47,037] [pool-1-thread-2] Initializing /data/brian/FLIP.oib: [testng] [2024-11-12 01:23:55,762] [pool-1-thread-2] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-12 01:24:07,271] [pool-1-thread-2] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-12 01:24:16,474] [pool-1-thread-2] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-12 01:24:24,049] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-12 01:24:34,281] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-12 01:24:44,618] [pool-1-thread-7] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-12 01:25:42,949] [pool-1-thread-2] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-12 01:25:52,251] [pool-1-thread-2] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-12 01:26:02,217] [pool-1-thread-2] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-12 01:28:55,105] [pool-1-thread-9] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-12 01:29:01,840] [pool-1-thread-9] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-12 01:29:19,123] [pool-1-thread-3] Initializing /data/christian/20min.oif: [testng] [2024-11-12 01:29:42,841] [pool-1-thread-9] Initializing /data/marc/V0606L.oib: [testng] [2024-11-12 01:29:59,673] [pool-1-thread-3] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-12 01:30:10,494] [pool-1-thread-9] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-12 01:31:09,549] [pool-1-thread-9] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-12 01:31:13,337] [pool-1-thread-9] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-12 01:31:21,175] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-11-12 01:31:35,005] [pool-1-thread-9] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-12 01:31:48,414] [pool-1-thread-9] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-12 01:33:46,461] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-12 01:33:49,559] [pool-1-thread-12] Initializing /data/david/Image0016.oib: [testng] [2024-11-12 01:33:58,940] [pool-1-thread-12] Initializing /data/monica/Image0056.oif: [testng] [2024-11-12 01:34:07,226] [pool-1-thread-10] Initializing /data/glen/Image0002.oif: [testng] [2024-11-12 01:35:15,683] [pool-1-thread-12] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-12 01:35:24,682] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-12 01:35:33,218] [pool-1-thread-12] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-12 01:36:05,539] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-12 01:36:14,616] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-12 01:36:24,299] [pool-1-thread-12] Initializing /data/johannes/step3.bmp: [testng] [2024-11-12 01:36:27,614] [pool-1-thread-12] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-12 01:39:53,372] [pool-1-thread-4] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-12 01:40:01,795] [pool-1-thread-4] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-12 01:40:11,088] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-12 01:40:20,760] [pool-1-thread-4] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-12 01:40:28,299] [pool-1-thread-4] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-12 01:40:31,089] [pool-1-thread-8] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-12 01:40:45,134] [pool-1-thread-4] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-12 01:41:30,006] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-12 01:41:39,272] [pool-1-thread-12] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-12 01:43:09,477] [pool-1-thread-3] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-12 01:43:19,047] [pool-1-thread-3] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-12 01:43:30,109] [pool-1-thread-3] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-12 01:43:41,474] [pool-1-thread-3] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-12 01:43:52,424] [pool-1-thread-3] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-12 01:49:07,484] [pool-1-thread-9] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-12 01:51:24,177] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-12 01:51:32,467] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-12 01:51:39,934] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-12 01:51:47,311] [pool-1-thread-5] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-12 01:52:00,165] [pool-1-thread-5] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-12 01:52:08,389] [pool-1-thread-5] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-12 01:52:18,092] [pool-1-thread-5] Initializing /data/sten/01.oib: [testng] [2024-11-12 01:52:25,805] [pool-1-thread-5] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-12 01:52:34,693] [pool-1-thread-5] Initializing /data/johannes/step2.bmp: [testng] [2024-11-12 01:52:38,110] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-12 01:55:32,443] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-12 01:55:39,963] [pool-1-thread-11] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-12 01:55:46,577] [pool-1-thread-11] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-11-12 01:56:28,541] [pool-1-thread-11] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-12 01:56:35,801] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-12 01:56:44,115] [pool-1-thread-11] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-12 01:56:50,377] [pool-1-thread-11] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-12 01:56:57,393] [pool-1-thread-11] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-12 01:57:02,404] [pool-1-thread-7] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-12 01:57:05,296] [pool-1-thread-11] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-12 01:57:58,239] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-12 01:58:07,022] [pool-1-thread-10] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-12 01:58:31,740] [pool-1-thread-7] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-12 01:58:37,542] [pool-1-thread-11] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-12 01:58:42,033] [pool-1-thread-7] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-12 01:58:51,915] [pool-1-thread-11] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-12 01:58:59,825] [pool-1-thread-11] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-12 01:59:02,015] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-12 01:59:10,123] [pool-1-thread-11] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 02:27:53,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:27:53,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:53,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-12_02-27-53.log] [testng] 02:27:53,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@718c2751 - End of configuration. [testng] 02:38:56,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:38:56,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:56,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-12_02-38-56.log] [testng] 02:38:56,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54fbe374 - End of configuration. [testng] 03:41:59,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:41:59,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:41:59,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-12_03-41-59.log] [testng] 03:41:59,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54eaf69d - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 170 minutes 51 seconds Finished: SUCCESS