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Started by upstream project "BIOFORMATS-test-repo" build number 253 originally caused by: Started by upstream project "Trigger" build number 277 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins10012802973353400821.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39897_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:10:23,489 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:10:23,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 02:10:23,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:10:23,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:10:23,492 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:10:23,492 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:10:23,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:10:23,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:10:23,493 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:10:23,494 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:10:23,494 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:10:23,494 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:10:23,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:10:23,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:10:23,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:10:23,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:10:23,698 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:10:23,699 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:10:23,699 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:10:23,699 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:10:23,699 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 02:10:23,700 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 02:10:23,700 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-12 02:10:23,708] [main] java.version = 11.0.16 [testng] 02:10:23,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:10:23,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:23,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-12_02-10-23.log] [testng] 02:10:23,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-12 02:10:23,755] [main] testng.directory = /data [testng] [2024-11-12 02:10:23,755] [main] testng.configDirectory = /config [testng] [2024-11-12 02:10:23,764] [main] testng.multiplier = 1.0 [testng] [2024-11-12 02:10:23,765] [main] testng.in-memory = false [testng] [2024-11-12 02:10:23,765] [main] testng.allow-missing = false [testng] [2024-11-12 02:10:23,765] [main] user.language = en [testng] [2024-11-12 02:10:23,765] [main] user.country = ${user.country} [testng] [2024-11-12 02:10:23,765] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-12 02:14:13,364] [main] ---------------------------------------- [testng] [2024-11-12 02:14:13,365] [main] Total files: 268 [testng] [2024-11-12 02:14:13,365] [main] Scan time: 229.599 s (856 ms/file) [testng] [2024-11-12 02:14:13,365] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-12 02:18:57,786] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] 02:18:57,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:18:57,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:57,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-12_02-18-57.log] [testng] 02:18:57,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d113b8f - End of configuration. [testng] [2024-11-12 02:18:58,444] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] 02:18:58,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:18:58,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:58,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-12_02-18-58.log] [testng] 02:18:58,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45d6d60b - End of configuration. [testng] [2024-11-12 02:18:58,827] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] 02:18:58,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:18:58,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:58,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-12_02-18-58.log] [testng] 02:18:58,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d6c69b - End of configuration. [testng] [2024-11-12 02:19:00,242] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] 02:19:00,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:19:00,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:00,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-12_02-19-00.log] [testng] 02:19:00,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1985dc5c - End of configuration. [testng] [2024-11-12 02:19:00,771] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] 02:19:00,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:19:00,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:00,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-12_02-19-00.log] [testng] 02:19:00,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d6fd831 - End of configuration. [testng] [2024-11-12 02:19:01,273] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 02:19:01,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:19:01,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:01,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-12_02-19-01.log] [testng] 02:19:01,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672f5e72 - End of configuration. [testng] [2024-11-12 02:19:01,836] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] 02:19:01,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:19:01,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:01,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-12_02-19-01.log] [testng] 02:19:01,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@510afc0 - End of configuration. [testng] [2024-11-12 02:19:03,767] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] 02:19:03,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:19:03,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:03,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-12_02-19-03.log] [testng] 02:19:03,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a5cf7ae - End of configuration. [testng] [2024-11-12 02:19:04,200] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 02:19:04,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:19:04,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:04,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-12_02-19-04.log] [testng] 02:19:04,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d5bb5b4 - End of configuration. [testng] [2024-11-12 02:19:04,738] [pool-1-thread-4] Initializing /data/steve/FITS/M13.fits: [testng] 02:19:04,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:19:04,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:04,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-12_02-19-04.log] [testng] 02:19:04,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76fcfa04 - End of configuration. [testng] [2024-11-12 02:19:04,912] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] 02:19:04,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:19:04,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:04,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-12_02-19-04.log] [testng] 02:19:04,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ca812d9 - End of configuration. [testng] [2024-11-12 02:19:06,854] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] 02:19:06,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:19:06,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:06,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-12_02-19-06.log] [testng] 02:19:06,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79cd85b4 - End of configuration. [testng] [2024-11-12 02:19:11,320] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-11-12 02:19:14,816] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-11-12 02:19:15,673] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-11-12 02:19:18,046] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-11-12 02:19:20,063] [pool-1-thread-5] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-11-12 02:19:21,989] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-11-12 02:19:24,283] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-11-12 02:19:30,635] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-11-12 02:19:31,432] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-11-12 02:19:32,961] [pool-1-thread-11] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-11-12 02:19:35,453] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-11-12 02:19:36,413] [pool-1-thread-7] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-11-12 02:19:36,985] [pool-1-thread-3] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-11-12 02:19:38,983] [pool-1-thread-10] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-11-12 02:19:40,671] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-11-12 02:19:43,968] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-11-12 02:19:46,613] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-11-12 02:19:48,222] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-11-12 02:19:49,402] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-11-12 02:19:50,070] [pool-1-thread-8] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-11-12 02:19:52,854] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-11-12 02:19:53,419] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-11-12 02:19:55,949] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-11-12 02:19:56,365] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-11-12 02:20:00,153] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-11-12 02:20:02,513] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-11-12 02:20:04,277] [pool-1-thread-2] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-11-12 02:20:05,441] [pool-1-thread-3] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-11-12 02:20:06,131] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-11-12 02:20:08,424] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-11-12 02:20:09,161] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-11-12 02:20:09,760] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-11-12 02:20:11,475] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-11-12 02:20:12,030] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-11-12 02:20:19,794] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-11-12 02:20:22,363] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-11-12 02:20:23,186] [pool-1-thread-8] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-11-12 02:20:24,297] [pool-1-thread-10] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-11-12 02:20:26,872] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-11-12 02:20:27,491] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-11-12 02:20:27,860] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-11-12 02:20:29,746] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-11-12 02:20:35,448] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-11-12 02:20:36,535] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-11-12 02:20:37,504] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-11-12 02:20:40,104] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-11-12 02:20:42,658] [pool-1-thread-5] Initializing /data/steve/FITS/M51.fits: [testng] [2024-11-12 02:20:42,822] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-11-12 02:20:45,200] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-11-12 02:20:47,706] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-11-12 02:20:51,150] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-11-12 02:20:52,593] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-11-12 02:20:53,889] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-11-12 02:20:56,452] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-11-12 02:20:58,712] [pool-1-thread-2] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-11-12 02:20:59,779] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-11-12 02:21:00,127] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-11-12 02:21:03,107] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-11-12 02:21:03,837] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-11-12 02:21:05,140] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-11-12 02:21:05,821] [pool-1-thread-12] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-11-12 02:21:08,542] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-11-12 02:21:08,896] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-11-12 02:21:09,662] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-11-12 02:21:09,904] [pool-1-thread-8] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-11-12 02:21:12,449] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-11-12 02:21:16,090] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-11-12 02:21:17,453] [pool-1-thread-2] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-11-12 02:21:17,883] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-11-12 02:21:18,541] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-11-12 02:21:19,320] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-11-12 02:21:21,958] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-11-12 02:21:22,575] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-11-12 02:21:24,037] [pool-1-thread-9] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-11-12 02:21:25,229] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-11-12 02:21:28,284] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-11-12 02:21:30,535] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-11-12 02:21:33,304] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-11-12 02:21:35,878] [pool-1-thread-12] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-11-12 02:21:36,656] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-11-12 02:21:37,090] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-11-12 02:21:37,869] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-11-12 02:21:38,620] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-11-12 02:21:40,034] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-11-12 02:21:42,450] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-11-12 02:21:46,251] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-11-12 02:21:46,923] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-11-12 02:21:47,706] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-11-12 02:21:50,423] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-11-12 02:21:51,867] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-11-12 02:21:52,267] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-11-12 02:21:52,498] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-11-12 02:21:53,338] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-11-12 02:21:55,580] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-11-12 02:21:57,691] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-11-12 02:21:58,901] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-11-12 02:21:59,675] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-11-12 02:22:00,437] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-11-12 02:22:00,656] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-11-12 02:22:01,682] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-11-12 02:22:02,714] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-11-12 02:22:03,725] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-11-12 02:22:05,987] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-11-12 02:22:08,795] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-11-12 02:22:11,567] [pool-1-thread-5] Initializing /data/steve/FITS/M104.fits: [testng] [2024-11-12 02:22:11,797] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-11-12 02:22:13,665] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-11-12 02:22:14,473] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-11-12 02:22:15,099] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-11-12 02:22:15,781] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-11-12 02:22:16,346] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-11-12 02:22:17,198] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-11-12 02:22:17,958] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-11-12 02:22:21,777] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-11-12 02:22:23,604] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-11-12 02:22:25,093] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-11-12 02:22:25,819] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-11-12 02:22:28,610] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-11-12 02:22:29,423] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-11-12 02:22:30,379] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-11-12 02:22:30,734] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-11-12 02:22:31,561] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-11-12 02:22:33,104] [pool-1-thread-11] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-11-12 02:22:36,178] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-11-12 02:22:36,893] [pool-1-thread-4] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-11-12 02:22:40,169] [pool-1-thread-6] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-11-12 02:22:42,277] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-11-12 02:22:43,438] [pool-1-thread-9] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-11-12 02:22:44,498] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-11-12 02:22:45,207] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-11-12 02:22:46,019] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-11-12 02:22:46,489] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-11-12 02:22:47,526] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-11-12 02:22:48,476] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-11-12 02:22:49,962] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-11-12 02:22:53,182] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-11-12 02:22:54,426] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-11-12 02:22:55,795] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-11-12 02:22:56,711] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-11-12 02:22:57,584] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-11-12 02:22:58,332] [pool-1-thread-10] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-11-12 02:22:58,970] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-11-12 02:22:59,614] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-11-12 02:23:00,692] [pool-1-thread-11] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-11-12 02:23:01,979] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-11-12 02:23:02,836] [pool-1-thread-4] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-11-12 02:23:06,041] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-11-12 02:23:07,286] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 minutes 53 seconds Finished: SUCCESS