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Started by upstream project "BIOFORMATS-test-repo" build number 30 originally caused by: Started by upstream project "Trigger" build number 33 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins9156440183934324254.sh + '[' avi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_3994_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:01:44,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:01:44,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:01:44,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:01:44,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:01:44,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:01:44,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:01:44,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:01:44,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:01:44,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:01:44,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:01:44,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:01:44,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:01:44,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:01:44,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:01:44,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:01:44,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:01:44,622 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:01:44,622 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:01:44,622 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:01:44,622 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:01:44,622 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:01:44,623 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:01:44,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 265 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-11 02:01:44,632] [main] java.version = 21 [testng] 02:01:44,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:01:44,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:44,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-11_02-01-44.log] [testng] 02:01:44,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-04-11 02:01:44,679] [main] testng.directory = /data [testng] [2024-04-11 02:01:44,679] [main] testng.configDirectory = /config [testng] [2024-04-11 02:01:44,709] [main] testng.multiplier = 1.0 [testng] [2024-04-11 02:01:44,710] [main] testng.in-memory = false [testng] [2024-04-11 02:01:44,710] [main] testng.allow-missing = false [testng] [2024-04-11 02:01:44,710] [main] user.language = en [testng] [2024-04-11 02:01:44,710] [main] user.country = ${user.country} [testng] [2024-04-11 02:01:44,710] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-11 02:01:45,611] [main] ---------------------------------------- [testng] [2024-04-11 02:01:45,611] [main] Total files: 40 [testng] [2024-04-11 02:01:45,611] [main] Scan time: 0.901 s (22 ms/file) [testng] [2024-04-11 02:01:45,612] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-11 02:05:47,354] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 02:05:47,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:05:47,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-11_02-05-47.log] [testng] 02:05:47,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@638956bb - End of configuration. [testng] [2024-04-11 02:05:47,401] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 02:05:47,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:05:47,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-11_02-05-47.log] [testng] 02:05:47,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2563918f - End of configuration. [testng] [2024-04-11 02:05:47,427] [pool-1-thread-11] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] 02:05:47,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:05:47,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-11_02-05-47.log] [testng] 02:05:47,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cebca2f - End of configuration. [testng] [2024-04-11 02:05:47,502] [pool-1-thread-10] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] 02:05:47,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:05:47,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-11_02-05-47.log] [testng] 02:05:47,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a6a1dd6 - End of configuration. [testng] [2024-04-11 02:05:47,526] [pool-1-thread-9] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] 02:05:47,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:05:47,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-11_02-05-47.log] [testng] 02:05:47,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7924cc7d - End of configuration. [testng] [2024-04-11 02:05:47,566] [pool-1-thread-8] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 02:05:47,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:05:47,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-11_02-05-47.log] [testng] 02:05:47,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e68d50 - End of configuration. [testng] [2024-04-11 02:05:47,629] [pool-1-thread-7] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 02:05:47,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:05:47,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-11_02-05-47.log] [testng] 02:05:47,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78d87468 - End of configuration. [testng] [2024-04-11 02:05:47,638] [pool-1-thread-6] Initializing /data/simon/24_bit_problem.avi: [testng] 02:05:47,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:05:47,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-11_02-05-47.log] [testng] 02:05:47,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cebe620 - End of configuration. [testng] [2024-04-11 02:05:47,712] [pool-1-thread-5] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:05:47,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:05:47,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-11_02-05-47.log] [testng] 02:05:47,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f5f8f34 - End of configuration. [testng] [2024-04-11 02:05:47,729] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 02:05:47,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:05:47,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-11_02-05-47.log] [testng] 02:05:47,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ca9cc48 - End of configuration. [testng] [2024-04-11 02:05:47,781] [pool-1-thread-3] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 02:05:47,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:05:47,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-11_02-05-47.log] [testng] 02:05:47,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6792290f - End of configuration. [testng] [2024-04-11 02:05:47,843] [pool-1-thread-2] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 02:05:47,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:05:47,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:47,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-11_02-05-47.log] [testng] 02:05:47,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a35670b - End of configuration. [testng] [2024-04-11 02:05:49,109] [pool-1-thread-7] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-04-11 02:05:49,136] [pool-1-thread-3] Initializing /data/kurt/40x_6um.avi: [testng] [2024-04-11 02:05:49,217] [pool-1-thread-12] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-04-11 02:05:52,037] [pool-1-thread-10] Initializing /data/ascb/TIRF.avi: [testng] [2024-04-11 02:05:53,500] [pool-1-thread-8] Initializing /data/kurt/63x_6um.avi: [testng] [2024-04-11 02:05:53,552] [pool-1-thread-5] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2024-04-11 02:05:53,791] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2024-04-11 02:05:53,914] [pool-1-thread-6] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-04-11 02:05:53,936] [pool-1-thread-9] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-04-11 02:05:54,143] [pool-1-thread-7] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-04-11 02:05:54,339] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-04-11 02:05:54,427] [pool-1-thread-6] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-04-11 02:05:54,471] [pool-1-thread-4] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-04-11 02:05:54,844] [pool-1-thread-1] Initializing /data/william/worm.avi: [testng] [2024-04-11 02:05:54,855] [pool-1-thread-2] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-04-11 02:05:54,985] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-04-11 02:05:55,007] [pool-1-thread-8] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-04-11 02:05:59,105] [pool-1-thread-11] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-04-11 02:05:59,215] [pool-1-thread-3] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-04-11 02:05:59,267] [pool-1-thread-11] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-04-11 02:05:59,384] [pool-1-thread-1] Initializing /data/chris/APZ04_009.avi: [testng] [2024-04-11 02:06:04,734] [pool-1-thread-6] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-04-11 02:06:04,786] [pool-1-thread-7] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-04-11 02:06:04,840] [pool-1-thread-9] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-04-11 02:06:04,928] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-04-11 02:06:05,088] [pool-1-thread-9] Initializing /data/kurt/40x_6um_2.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 33 seconds Finished: SUCCESS