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Started by upstream project "BIOFORMATS-test-repo" build number 254 originally caused by: Started by upstream project "Trigger" build number 278 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13592814541764805792.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39988_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:23:00,951 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:23:00,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:23:00,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:00,953 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:00,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:23:00,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:23:00,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:23:00,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:00,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:00,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:23:00,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:23:00,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:23:01,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:23:01,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:23:01,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:23:01,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:23:01,139 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:23:01,139 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:23:01,139 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:23:01,139 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:23:01,139 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:23:01,140 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:23:01,140 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-13 00:23:01,148] [main] java.version = 17.0.2 [testng] 00:23:01,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:23:01,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:01,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-13_00-23-01.log] [testng] 00:23:01,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-13 00:23:01,193] [main] testng.directory = /data [testng] [2024-11-13 00:23:01,193] [main] testng.configDirectory = /config [testng] [2024-11-13 00:23:01,202] [main] testng.multiplier = 1.0 [testng] [2024-11-13 00:23:01,203] [main] testng.in-memory = false [testng] [2024-11-13 00:23:01,203] [main] testng.allow-missing = false [testng] [2024-11-13 00:23:01,203] [main] user.language = en [testng] [2024-11-13 00:23:01,203] [main] user.country = ${user.country} [testng] [2024-11-13 00:23:01,203] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-13 00:23:25,025] [main] ---------------------------------------- [testng] [2024-11-13 00:23:25,025] [main] Total files: 21 [testng] [2024-11-13 00:23:25,025] [main] Scan time: 23.822 s (1134 ms/file) [testng] [2024-11-13 00:23:25,025] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-13 00:24:04,822] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt: [testng] 00:24:04,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:24:04,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:04,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-13_00-24-04.log] [testng] 00:24:04,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@413cfd5c - End of configuration. [testng] [2024-11-13 00:24:07,004] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt: [testng] 00:24:07,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:24:07,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:07,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-13_00-24-07.log] [testng] 00:24:07,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@592856aa - End of configuration. [testng] [2024-11-13 00:24:09,864] [pool-1-thread-11] Initializing /data/stefan/001_q10.txt: [testng] 00:24:09,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:24:09,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:09,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-13_00-24-09.log] [testng] 00:24:09,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32d6ceb - End of configuration. [testng] [2024-11-13 00:24:13,705] [pool-1-thread-10] Initializing /data/stefan/001_q01.txt: [testng] 00:24:13,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:24:13,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:13,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-13_00-24-13.log] [testng] 00:24:13,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@350418c3 - End of configuration. [testng] [2024-11-13 00:24:15,950] [pool-1-thread-9] Initializing /data/stefan/001_q15.txt: [testng] 00:24:15,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:24:15,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:15,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-13_00-24-15.log] [testng] 00:24:15,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aba8227 - End of configuration. [testng] [2024-11-13 00:24:17,819] [pool-1-thread-8] Initializing /data/stefan/001_q13.txt: [testng] 00:24:17,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:24:17,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:17,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-13_00-24-17.log] [testng] 00:24:17,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50a15581 - End of configuration. [testng] [2024-11-13 00:24:19,016] [pool-1-thread-7] Initializing /data/stefan/001_q09.txt: [testng] 00:24:19,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:24:19,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:19,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-13_00-24-19.log] [testng] 00:24:19,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@277a4981 - End of configuration. [testng] [2024-11-13 00:24:21,425] [pool-1-thread-6] Initializing /data/stefan/001_q06.txt: [testng] 00:24:21,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:24:21,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:21,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-13_00-24-21.log] [testng] 00:24:21,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ca8e4f0 - End of configuration. [testng] [2024-11-13 00:24:22,706] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt: [testng] 00:24:22,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:24:22,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:22,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-13_00-24-22.log] [testng] 00:24:22,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d4a7ba0 - End of configuration. [testng] [2024-11-13 00:24:25,806] [pool-1-thread-4] Initializing /data/stefan/001_q17.txt: [testng] 00:24:25,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:24:25,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:25,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-13_00-24-25.log] [testng] 00:24:25,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10235c4 - End of configuration. [testng] [2024-11-13 00:24:27,720] [pool-1-thread-3] Initializing /data/stefan/001_q14.txt: [testng] 00:24:27,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:24:27,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:27,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-13_00-24-27.log] [testng] 00:24:27,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ab18ff7 - End of configuration. [testng] [2024-11-13 00:24:29,598] [pool-1-thread-2] Initializing /data/stefan/001_q11.txt: [testng] 00:24:29,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:24:29,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:29,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-13_00-24-29.log] [testng] 00:24:29,599 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45c58ba0 - End of configuration. [testng] [2024-11-13 00:24:57,838] [pool-1-thread-10] Initializing /data/stefan/001_q05.txt: [testng] [2024-11-13 00:24:59,515] [pool-1-thread-1] Initializing /data/stefan/001_q16.txt: [testng] [2024-11-13 00:25:00,803] [pool-1-thread-6] Initializing /data/stefan/001_q03.txt: [testng] [2024-11-13 00:25:02,306] [pool-1-thread-9] Initializing /data/stefan/001_q08.txt: [testng] [2024-11-13 00:25:04,780] [pool-1-thread-12] Initializing /data/stefan/001_q07.txt: [testng] [2024-11-13 00:25:07,866] [pool-1-thread-3] Initializing /data/stefan/001_q02.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 37 seconds Finished: SUCCESS