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Started by upstream project "BIOFORMATS-test-repo" build number 254 originally caused by: Started by upstream project "Trigger" build number 278 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins8499593367731954113.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40014_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:44:02,031 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:44:02,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:44:02,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:44:02,033 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:44:02,034 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:44:02,034 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:44:02,034 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:44:02,034 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:44:02,035 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:44:02,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:44:02,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:44:02,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:44:02,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:44:02,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:44:02,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:44:02,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:44:02,220 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:44:02,220 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:44:02,220 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:44:02,221 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:44:02,221 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:44:02,222 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:44:02,222 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-13 00:44:02,230] [main] java.version = 17.0.2 [testng] 00:44:02,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:44:02,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:02,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-13_00-44-02.log] [testng] 00:44:02,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-13 00:44:02,276] [main] testng.directory = /data [testng] [2024-11-13 00:44:02,276] [main] testng.configDirectory = /config [testng] [2024-11-13 00:44:02,285] [main] testng.multiplier = 1.0 [testng] [2024-11-13 00:44:02,286] [main] testng.in-memory = false [testng] [2024-11-13 00:44:02,286] [main] testng.allow-missing = false [testng] [2024-11-13 00:44:02,286] [main] user.language = en [testng] [2024-11-13 00:44:02,286] [main] user.country = ${user.country} [testng] [2024-11-13 00:44:02,286] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-13 00:44:19,665] [main] ---------------------------------------- [testng] [2024-11-13 00:44:19,666] [main] Total files: 259 [testng] [2024-11-13 00:44:19,666] [main] Scan time: 17.379 s (67 ms/file) [testng] [2024-11-13 00:44:19,666] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-13 00:50:24,074] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 00:50:24,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:50:24,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:24,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-13_00-50-24.log] [testng] 00:50:24,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1119e870 - End of configuration. [testng] [2024-11-13 00:50:38,949] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] 00:50:38,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:50:38,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:38,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-13_00-50-38.log] [testng] 00:50:38,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4db84aa6 - End of configuration. [testng] [2024-11-13 00:50:39,374] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] 00:50:39,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:50:39,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:39,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-13_00-50-39.log] [testng] 00:50:39,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bf4aabd - End of configuration. [testng] [2024-11-13 00:50:39,693] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] 00:50:39,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:50:39,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:39,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-13_00-50-39.log] [testng] 00:50:39,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26f5dea8 - End of configuration. [testng] [2024-11-13 00:50:40,357] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] 00:50:40,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:50:40,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:40,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-13_00-50-40.log] [testng] 00:50:40,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189bf79d - End of configuration. [testng] [2024-11-13 00:50:40,635] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] 00:50:40,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:50:40,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:40,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-13_00-50-40.log] [testng] 00:50:40,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35e0638d - End of configuration. [testng] [2024-11-13 00:50:41,100] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] 00:50:41,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:50:41,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:41,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-13_00-50-41.log] [testng] 00:50:41,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fcb720b - End of configuration. [testng] [2024-11-13 00:50:41,633] [pool-1-thread-6] Initializing /data/stefan/cytosol_03e.oib: [testng] 00:50:41,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:50:41,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:41,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-13_00-50-41.log] [testng] 00:50:41,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44042792 - End of configuration. [testng] [2024-11-13 00:50:42,460] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 00:50:42,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:50:42,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:42,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-13_00-50-42.log] [testng] 00:50:42,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@275be4c1 - End of configuration. [testng] [2024-11-13 00:50:43,319] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] 00:50:43,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:50:43,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:43,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-13_00-50-43.log] [testng] 00:50:43,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ddc5575 - End of configuration. [testng] [2024-11-13 00:50:43,970] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] 00:50:43,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:50:43,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:43,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-13_00-50-43.log] [testng] 00:50:43,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@139e39f9 - End of configuration. [testng] [2024-11-13 00:50:47,885] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] 00:50:47,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:50:47,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:47,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-13_00-50-47.log] [testng] 00:50:47,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d07b87 - End of configuration. [testng] [2024-11-13 00:50:52,286] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-13 00:50:52,918] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-13 00:50:53,440] [pool-1-thread-12] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-13 00:51:02,652] [pool-1-thread-4] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-13 00:51:04,291] [pool-1-thread-7] Initializing /data/marc/V0606L.oib: [testng] [2024-11-13 00:51:06,994] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-13 00:51:11,356] [pool-1-thread-11] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-13 00:51:12,423] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-11-13 00:51:13,507] [pool-1-thread-6] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-13 00:51:17,210] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-13 00:51:18,565] [pool-1-thread-2] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-13 00:51:19,093] [pool-1-thread-9] Initializing /data/marc/V0606J.oib: [testng] [2024-11-13 00:51:20,906] [pool-1-thread-4] Initializing /data/glen/simulstack.oif: [testng] [2024-11-13 00:51:26,276] [pool-1-thread-7] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-11-13 00:51:27,512] [pool-1-thread-11] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-13 00:51:28,060] [pool-1-thread-2] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-13 00:51:32,623] [pool-1-thread-11] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-13 00:51:41,530] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-13 00:51:42,934] [pool-1-thread-9] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-13 00:51:45,901] [pool-1-thread-9] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-13 00:51:47,599] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-13 00:51:51,025] [pool-1-thread-8] Initializing /data/allan/62909#1.oib: [testng] [2024-11-13 00:51:51,491] [pool-1-thread-9] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-13 00:51:54,643] [pool-1-thread-8] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-13 00:51:55,757] [pool-1-thread-9] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-13 00:51:57,993] [pool-1-thread-7] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-13 00:51:59,615] [pool-1-thread-8] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-13 00:52:07,392] [pool-1-thread-9] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-13 00:52:07,963] [pool-1-thread-7] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-13 00:52:08,822] [pool-1-thread-11] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-13 00:52:12,709] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-13 00:52:13,231] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-13 00:52:14,234] [pool-1-thread-11] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-13 00:52:18,059] [pool-1-thread-7] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-13 00:52:18,600] [pool-1-thread-9] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-13 00:52:36,600] [pool-1-thread-7] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-13 00:52:37,237] [pool-1-thread-11] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-13 00:52:49,142] [pool-1-thread-5] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-13 00:52:51,394] [pool-1-thread-7] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-13 00:53:11,697] [pool-1-thread-10] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-13 00:53:27,002] [pool-1-thread-5] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-13 00:53:31,635] [pool-1-thread-5] Initializing /data/david/Image0016.oib: [testng] [2024-11-13 00:53:35,844] [pool-1-thread-5] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-13 00:54:17,675] [pool-1-thread-5] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-13 00:54:23,343] [pool-1-thread-5] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-13 00:54:50,841] [pool-1-thread-5] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-13 00:54:56,218] [pool-1-thread-5] Initializing /data/jae/Image0001.oib: [testng] [2024-11-13 00:55:01,881] [pool-1-thread-5] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-13 00:55:10,277] [pool-1-thread-5] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-13 00:55:44,183] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-13 00:55:47,963] [pool-1-thread-5] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-13 00:55:49,281] [pool-1-thread-5] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-13 00:55:53,433] [pool-1-thread-5] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-13 00:55:55,512] [pool-1-thread-5] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-13 00:57:34,328] [pool-1-thread-6] Initializing /data/johannes/step4.bmp: [testng] [2024-11-13 00:57:36,398] [pool-1-thread-6] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-13 00:57:41,849] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-13 00:57:49,447] [pool-1-thread-6] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-13 00:57:52,451] [pool-1-thread-6] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-13 00:58:14,064] [pool-1-thread-6] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-13 00:58:18,755] [pool-1-thread-6] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-13 01:03:13,229] [pool-1-thread-4] Initializing /data/sten/01.oib: [testng] [2024-11-13 01:03:17,357] [pool-1-thread-4] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-13 01:03:30,049] [pool-1-thread-4] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-13 01:04:24,250] [pool-1-thread-2] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-13 01:04:27,898] [pool-1-thread-2] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-13 01:05:00,204] [pool-1-thread-2] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-13 01:05:05,179] [pool-1-thread-2] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-13 01:05:08,424] [pool-1-thread-2] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-13 01:05:12,644] [pool-1-thread-2] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-13 01:05:16,939] [pool-1-thread-2] Initializing /data/aryeh/1h.oib: [testng] [2024-11-13 01:05:25,026] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] [2024-11-13 01:05:57,382] [pool-1-thread-12] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-13 01:06:01,136] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-13 01:06:04,627] [pool-1-thread-12] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-13 01:08:17,378] [pool-1-thread-7] Initializing /data/monica/Image0056.oif: [testng] [2024-11-13 01:09:00,767] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-13 01:09:06,544] [pool-1-thread-7] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-13 01:09:11,817] [pool-1-thread-7] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-13 01:09:17,160] [pool-1-thread-7] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-13 01:09:21,863] [pool-1-thread-7] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-13 01:10:49,534] [pool-1-thread-10] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-13 01:11:08,066] [pool-1-thread-3] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-13 01:11:21,090] [pool-1-thread-11] Initializing /data/christian/20min.oif: [testng] [2024-11-13 01:11:36,598] [pool-1-thread-3] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-13 01:11:40,689] [pool-1-thread-11] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-13 01:11:46,491] [pool-1-thread-11] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-13 01:11:58,308] [pool-1-thread-8] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-13 01:12:04,682] [pool-1-thread-8] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-13 01:12:13,976] [pool-1-thread-3] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-13 01:12:20,971] [pool-1-thread-3] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-13 01:12:38,417] [pool-1-thread-8] Initializing /data/glen/Image0002.oif: [testng] [2024-11-13 01:13:10,475] [pool-1-thread-7] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-13 01:13:12,042] [pool-1-thread-7] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-13 01:13:16,763] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-13 01:13:22,637] [pool-1-thread-7] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-13 01:13:26,945] [pool-1-thread-7] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-13 01:13:31,632] [pool-1-thread-7] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-13 01:13:35,859] [pool-1-thread-7] Initializing /data/michael/CELL3.oib: [testng] [2024-11-13 01:13:40,136] [pool-1-thread-7] Initializing /data/brian/FLIP.oib: [testng] [2024-11-13 01:13:46,461] [pool-1-thread-7] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-13 01:13:53,305] [pool-1-thread-7] Initializing /data/johannes/step1.bmp: [testng] [2024-11-13 01:13:56,236] [pool-1-thread-7] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-13 01:14:23,860] [pool-1-thread-11] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-13 01:14:29,810] [pool-1-thread-11] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-13 01:15:03,079] [pool-1-thread-3] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-13 01:15:11,692] [pool-1-thread-3] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-13 01:15:17,925] [pool-1-thread-3] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-13 01:15:25,452] [pool-1-thread-12] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-13 01:15:30,647] [pool-1-thread-3] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-13 01:15:33,575] [pool-1-thread-3] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-13 01:16:28,754] [pool-1-thread-9] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-13 01:16:37,550] [pool-1-thread-9] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-13 01:17:10,317] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-13 01:17:19,182] [pool-1-thread-3] Initializing /data/karl/Image0009.oib: [testng] [2024-11-13 01:17:24,563] [pool-1-thread-3] Initializing /data/molly/11OCT2.OIF: [testng] [2024-11-13 01:19:24,377] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-13 01:19:31,206] [pool-1-thread-2] Initializing /data/johannes/step3.bmp: [testng] [2024-11-13 01:19:34,015] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-13 01:19:41,331] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-13 01:19:49,103] [pool-1-thread-2] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-13 01:19:56,379] [pool-1-thread-2] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-13 01:21:42,970] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-13 01:21:51,811] [pool-1-thread-6] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-13 01:22:23,845] [pool-1-thread-10] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-13 01:22:31,201] [pool-1-thread-10] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-13 01:23:14,030] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-13 01:23:21,062] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-13 01:30:40,478] [pool-1-thread-6] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-13 01:30:46,877] [pool-1-thread-6] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-13 01:30:54,600] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-13 01:31:02,080] [pool-1-thread-6] Initializing /data/johannes/step2.bmp: [testng] 02:41:22,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:41:22,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:22,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-13_02-41-22.log] [testng] 02:41:22,776 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f467bb9 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 117 minutes 25 seconds Finished: SUCCESS