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Started by upstream project "BIOFORMATS-test-repo" build number 254
originally caused by:
 Started by upstream project "Trigger" build number 278
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins8293870194066248145.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_40053_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:37:17,662 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:37:17,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 01:37:17,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:37:17,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:37:17,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:37:17,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:37:17,666 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:37:17,666 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:37:17,666 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:37:17,667 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:37:17,667 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:37:17,667 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:37:17,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:37:17,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:37:17,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:37:17,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:37:17,852 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:37:17,853 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:37:17,853 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:37:17,853 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:37:17,853 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 01:37:17,854 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 01:37:17,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-13 01:37:17,863] [main] java.version = 17.0.2
   [testng] 01:37:17,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:37:17,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:17,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-13_01-37-17.log]
   [testng] 01:37:17,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-11-13 01:37:17,909] [main] testng.directory = /data
   [testng] [2024-11-13 01:37:17,909] [main] testng.configDirectory = /config
   [testng] [2024-11-13 01:37:17,918] [main] testng.multiplier = 1.0
   [testng] [2024-11-13 01:37:17,918] [main] testng.in-memory = false
   [testng] [2024-11-13 01:37:17,918] [main] testng.allow-missing = false
   [testng] [2024-11-13 01:37:17,919] [main] user.language = en
   [testng] [2024-11-13 01:37:17,919] [main] user.country = ${user.country}
   [testng] [2024-11-13 01:37:17,919] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-13 01:37:19,693] [main] ----------------------------------------
   [testng] [2024-11-13 01:37:19,693] [main] Total files: 16
   [testng] [2024-11-13 01:37:19,693] [main] Scan time: 1.774 s (110 ms/file)
   [testng] [2024-11-13 01:37:19,694] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-13 01:37:36,278] [pool-1-thread-1] Initializing /data/samples/5440.afi: 
   [testng] 01:37:36,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:37:36,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:36,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-13_01-37-36.log]
   [testng] 01:37:36,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fb508ef - End of configuration.
   [testng] [2024-11-13 01:37:36,858] [pool-1-thread-12] Initializing /data/samples/5339.afi: 
   [testng] 01:37:36,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:37:36,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:36,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-13_01-37-36.log]
   [testng] 01:37:36,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44d0ac9e - End of configuration.
   [testng] [2024-11-13 01:37:37,417] [pool-1-thread-11] Initializing /data/samples/5383.afi: 
   [testng] 01:37:37,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:37:37,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:37,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-13_01-37-37.log]
   [testng] 01:37:37,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6afc79ff - End of configuration.
   [testng] [2024-11-13 01:37:37,922] [pool-1-thread-10] Initializing /data/samples/5306.afi: 
   [testng] 01:37:37,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:37:37,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:37,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-13_01-37-37.log]
   [testng] 01:37:37,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8993ec1 - End of configuration.
   [testng] [2024-11-13 01:37:38,450] [pool-1-thread-9] Initializing /data/samples/5351.afi: 
   [testng] 01:37:38,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:37:38,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:38,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-13_01-37-38.log]
   [testng] 01:37:38,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c6245ae - End of configuration.
   [testng] [2024-11-13 01:37:38,917] [pool-1-thread-8] Initializing /data/samples/5400.afi: 
   [testng] 01:37:38,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:37:38,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:38,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-13_01-37-38.log]
   [testng] 01:37:38,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6963f6d7 - End of configuration.
   [testng] [2024-11-13 01:37:39,831] [pool-1-thread-7] Initializing /data/samples/5387.afi: 
   [testng] 01:37:39,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:37:39,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:39,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-13_01-37-39.log]
   [testng] 01:37:39,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@138d4bc4 - End of configuration.
   [testng] [2024-11-13 01:37:40,319] [pool-1-thread-6] Initializing /data/samples/5365.afi: 
   [testng] 01:37:40,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:37:40,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:40,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-13_01-37-40.log]
   [testng] 01:37:40,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2173c84 - End of configuration.
   [testng] [2024-11-13 01:37:40,759] [pool-1-thread-5] Initializing /data/samples/5407.afi: 
   [testng] 01:37:40,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:37:40,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:40,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-13_01-37-40.log]
   [testng] 01:37:40,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38ade730 - End of configuration.
   [testng] [2024-11-13 01:37:41,238] [pool-1-thread-4] Initializing /data/samples/5343.afi: 
   [testng] 01:37:41,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:37:41,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:41,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-13_01-37-41.log]
   [testng] 01:37:41,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@323d77ff - End of configuration.
   [testng] [2024-11-13 01:37:41,711] [pool-1-thread-3] Initializing /data/samples/5371.afi: 
   [testng] 01:37:41,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:37:41,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:41,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-13_01-37-41.log]
   [testng] 01:37:41,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b88fa95 - End of configuration.
   [testng] [2024-11-13 01:37:42,155] [pool-1-thread-2] Initializing /data/samples/5347.afi: 
   [testng] 01:37:42,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:37:42,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:37:42,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-13_01-37-42.log]
   [testng] 01:37:42,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c2e0899 - End of configuration.
   [testng] [2024-11-13 01:38:26,194] [pool-1-thread-10] Initializing /data/samples/5358.afi: 
   [testng] [2024-11-13 01:38:34,590] [pool-1-thread-6] Initializing /data/samples/5446.afi: 
   [testng] [2024-11-13 01:38:36,611] [pool-1-thread-8] Initializing /data/samples/5414.afi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 2 minutes 10 seconds
Finished: SUCCESS