Started by upstream project "BIOFORMATS-test-repo" build number 255 originally caused by: Started by upstream project "Trigger" build number 279 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins10179434681507696681.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40147_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:31,309 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:31,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:22:31,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:31,311 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:31,312 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:31,312 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:31,313 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:31,313 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:31,313 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:31,314 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:31,314 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:31,314 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:31,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:31,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:31,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:31,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:31,564 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:31,564 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:31,565 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:31,565 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:31,565 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:22:31,566 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:22:31,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 253 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-14 00:22:31,575] [main] java.version = 21 [testng] 00:22:31,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:31,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:31,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-14_00-22-31.log] [testng] 00:22:31,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-14 00:22:31,621] [main] testng.directory = /data [testng] [2024-11-14 00:22:31,621] [main] testng.configDirectory = /config [testng] [2024-11-14 00:22:31,630] [main] testng.multiplier = 1.0 [testng] [2024-11-14 00:22:31,631] [main] testng.in-memory = false [testng] [2024-11-14 00:22:31,631] [main] testng.allow-missing = false [testng] [2024-11-14 00:22:31,631] [main] user.language = en [testng] [2024-11-14 00:22:31,631] [main] user.country = ${user.country} [testng] [2024-11-14 00:22:31,631] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-14 00:22:55,799] [main] ---------------------------------------- [testng] [2024-11-14 00:22:55,799] [main] Total files: 315 [testng] [2024-11-14 00:22:55,799] [main] Scan time: 24.168 s (76 ms/file) [testng] [2024-11-14 00:22:55,800] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-14 00:33:32,683] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] 00:33:32,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:33:32,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:32,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-14_00-33-32.log] [testng] 00:33:32,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5598ed3a - End of configuration. [testng] [2024-11-14 00:33:35,915] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] 00:33:35,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:33:35,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:35,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-14_00-33-35.log] [testng] 00:33:35,917 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e710fb7 - End of configuration. [testng] [2024-11-14 00:33:36,228] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] 00:33:36,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:33:36,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:36,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-14_00-33-36.log] [testng] 00:33:36,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@171f709e - End of configuration. [testng] [2024-11-14 00:33:36,880] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] 00:33:36,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:33:36,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:36,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-14_00-33-36.log] [testng] 00:33:36,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@255c9c8d - End of configuration. [testng] [2024-11-14 00:33:37,465] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] 00:33:37,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:33:37,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:37,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-14_00-33-37.log] [testng] 00:33:37,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fd8df6a - End of configuration. [testng] [2024-11-14 00:33:37,874] [pool-1-thread-8] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] 00:33:37,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:33:37,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:37,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-14_00-33-37.log] [testng] 00:33:37,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74257ff9 - End of configuration. [testng] [2024-11-14 00:33:38,762] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] 00:33:38,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:33:38,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:38,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-14_00-33-38.log] [testng] 00:33:38,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29cbb421 - End of configuration. [testng] [2024-11-14 00:33:39,070] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif: [testng] 00:33:39,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:33:39,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:39,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-14_00-33-39.log] [testng] 00:33:39,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ebd7eb8 - End of configuration. [testng] [2024-11-14 00:33:39,580] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] 00:33:39,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:33:39,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:39,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-14_00-33-39.log] [testng] 00:33:39,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@777458f9 - End of configuration. [testng] [2024-11-14 00:33:40,352] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] 00:33:40,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:33:40,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:40,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-14_00-33-40.log] [testng] 00:33:40,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59341275 - End of configuration. [testng] [2024-11-14 00:33:41,112] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 00:33:41,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:33:41,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:41,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-14_00-33-41.log] [testng] 00:33:41,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2680c8ab - End of configuration. [testng] [2024-11-14 00:33:41,601] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] 00:33:41,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:33:41,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:41,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-14_00-33-41.log] [testng] 00:33:41,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c6ca6bb - End of configuration. [testng] [2024-11-14 00:33:47,301] [pool-1-thread-3] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-11-14 00:33:47,811] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-11-14 00:33:48,313] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-11-14 00:33:48,921] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-11-14 00:33:49,387] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-14 00:33:50,179] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-11-14 00:33:51,036] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-11-14 00:33:51,760] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-11-14 00:33:52,402] [pool-1-thread-9] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-11-14 00:33:56,164] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-11-14 00:33:57,202] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-11-14 00:33:57,801] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-11-14 00:33:58,285] [pool-1-thread-6] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-11-14 00:33:58,699] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-11-14 00:33:59,334] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-11-14 00:34:00,683] [pool-1-thread-7] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-11-14 00:34:04,272] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-11-14 00:34:05,007] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-11-14 00:34:06,106] [pool-1-thread-11] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-11-14 00:34:06,741] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-11-14 00:34:14,536] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-11-14 00:34:14,892] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-11-14 00:34:17,880] [pool-1-thread-6] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-11-14 00:34:18,816] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-11-14 00:34:22,377] [pool-1-thread-12] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-11-14 00:34:23,725] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-11-14 00:34:24,622] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-11-14 00:34:25,231] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-11-14 00:34:26,135] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-11-14 00:34:27,173] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-11-14 00:34:27,867] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-11-14 00:34:31,878] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-11-14 00:34:32,313] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-11-14 00:34:32,767] [pool-1-thread-6] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-11-14 00:34:33,530] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-11-14 00:34:33,958] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-11-14 00:34:34,885] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-11-14 00:34:38,620] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-11-14 00:34:39,095] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-11-14 00:34:39,698] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-11-14 00:34:40,161] [pool-1-thread-11] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-11-14 00:34:42,002] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-11-14 00:34:42,682] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-11-14 00:34:43,231] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-11-14 00:34:44,821] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-11-14 00:34:45,575] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-11-14 00:34:49,552] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-11-14 00:34:50,185] [pool-1-thread-2] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-11-14 00:34:51,062] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-11-14 00:34:52,404] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-11-14 00:34:54,349] [pool-1-thread-11] Initializing /data/qa-17270/image1.oir: [testng] [2024-11-14 00:34:55,413] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-11-14 00:34:55,886] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-11-14 00:34:57,172] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-11-14 00:34:57,659] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-11-14 00:34:58,413] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-11-14 00:35:01,203] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-11-14 00:35:01,887] [pool-1-thread-9] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-11-14 00:35:10,293] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-11-14 00:35:11,437] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-11-14 00:35:11,903] [pool-1-thread-6] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-11-14 00:35:12,702] [pool-1-thread-5] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-11-14 00:35:14,431] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-11-14 00:35:17,856] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-11-14 00:35:21,026] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-11-14 00:35:23,933] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-11-14 00:35:26,448] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-14 00:35:26,988] [pool-1-thread-5] Initializing /data/qa-17270/stack1.oir: [testng] [2024-11-14 00:35:29,062] [pool-1-thread-12] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-11-14 00:35:35,415] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-11-14 00:35:37,680] [pool-1-thread-12] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-11-14 00:36:00,067] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-11-14 00:36:02,173] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-11-14 00:36:05,444] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-11-14 00:36:06,269] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-11-14 00:36:06,888] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-11-14 00:36:08,791] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-11-14 00:36:11,827] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-11-14 00:36:13,712] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-11-14 00:36:16,772] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-11-14 00:36:19,217] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-11-14 00:36:21,913] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-11-14 00:36:22,931] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-11-14 00:36:27,332] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-11-14 00:36:28,278] [pool-1-thread-9] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-11-14 00:36:29,836] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-11-14 00:36:33,988] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-11-14 00:36:36,078] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-11-14 00:36:37,184] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-11-14 00:36:38,432] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-11-14 00:36:41,141] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-11-14 00:36:41,583] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-11-14 00:36:42,586] [pool-1-thread-2] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-11-14 00:36:45,536] [pool-1-thread-9] Initializing /data/qa-17919/f10187.oir: [testng] [2024-11-14 00:37:06,824] [pool-1-thread-11] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-11-14 00:37:08,024] [pool-1-thread-6] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-11-14 00:37:10,745] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-11-14 00:37:17,437] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-11-14 00:37:18,765] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-14 00:37:24,737] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-11-14 00:37:25,957] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-11-14 00:37:28,933] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-11-14 00:37:33,668] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-11-14 00:37:35,018] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-11-14 00:37:39,473] [pool-1-thread-5] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-11-14 00:37:41,059] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-11-14 00:37:42,108] [pool-1-thread-2] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-11-14 00:37:51,030] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-11-14 00:37:52,720] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-11-14 00:37:54,388] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-11-14 00:37:55,015] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-11-14 00:38:02,575] [pool-1-thread-3] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-11-14 00:38:05,083] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-11-14 00:38:06,923] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-11-14 00:38:10,598] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-11-14 00:38:12,423] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-11-14 00:38:14,889] [pool-1-thread-2] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-11-14 00:38:15,996] [pool-1-thread-5] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-11-14 00:39:09,037] [pool-1-thread-3] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-11-14 00:39:12,855] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-11-14 00:39:14,035] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-11-14 00:39:17,454] [pool-1-thread-2] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-11-14 00:39:20,960] [pool-1-thread-3] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-11-14 00:39:22,024] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-11-14 00:39:24,582] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-11-14 00:39:25,667] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-11-14 00:39:29,566] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-11-14 00:39:31,407] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-11-14 00:39:32,692] [pool-1-thread-3] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-11-14 00:39:35,888] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-11-14 00:39:38,386] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-11-14 00:39:40,958] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-11-14 00:39:42,997] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-11-14 00:39:45,347] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-11-14 00:39:46,719] [pool-1-thread-11] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-11-14 00:39:49,671] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-11-14 00:39:51,560] [pool-1-thread-6] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-11-14 00:39:52,940] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-11-14 00:39:54,186] [pool-1-thread-8] Initializing /data/olympus/XYZt.vsi: [testng] [2024-11-14 00:39:55,884] [pool-1-thread-11] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-11-14 00:39:58,175] [pool-1-thread-2] Initializing /data/qa-17917/f10010.oir: [testng] [2024-11-14 00:40:29,001] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-11-14 00:40:29,696] [pool-1-thread-6] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-11-14 00:40:30,169] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-11-14 00:40:32,713] [pool-1-thread-11] Initializing /data/olympus/XYZt.oir: [testng] [2024-11-14 00:40:34,730] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-11-14 00:40:36,314] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-11-14 00:40:37,541] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-11-14 00:40:39,258] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-11-14 00:40:39,608] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-11-14 00:40:44,584] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-11-14 00:40:46,208] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-11-14 00:40:46,788] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-11-14 00:40:47,183] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-11-14 00:40:47,720] [pool-1-thread-9] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-11-14 00:40:49,867] [pool-1-thread-6] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-11-14 00:40:51,455] [pool-1-thread-12] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-11-14 00:40:54,993] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-11-14 00:40:55,847] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-11-14 00:40:56,655] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-11-14 00:40:57,929] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-11-14 00:40:59,453] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-11-14 00:41:03,713] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-11-14 00:41:04,082] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-11-14 00:41:05,592] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-11-14 00:41:06,145] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-11-14 00:41:06,589] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-11-14 00:41:11,271] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-11-14 00:41:12,244] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-11-14 00:41:17,137] [pool-1-thread-12] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-11-14 00:41:20,357] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-11-14 00:41:21,239] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-11-14 00:41:22,067] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-11-14 00:41:22,869] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-11-14 00:41:24,085] [pool-1-thread-6] Initializing /data/qa-17335/1.oir: [testng] [2024-11-14 00:41:25,913] [pool-1-thread-9] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-11-14 00:41:29,951] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-11-14 00:41:31,330] [pool-1-thread-3] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-11-14 00:41:32,663] [pool-1-thread-11] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-11-14 00:41:35,042] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 52 minutes 1 second Finished: SUCCESS