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Started by upstream project "BIOFORMATS-test-repo" build number 255 originally caused by: Started by upstream project "Trigger" build number 279 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins3387879520885659741.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40178_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:45:24,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:45:24,852 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:45:24,852 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:45:24,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:45:24,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:45:24,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:45:24,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:45:24,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:45:24,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:45:24,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:45:24,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:45:24,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:45:25,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:45:25,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:45:25,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:45:25,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:45:25,052 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:45:25,052 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:45:25,052 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:45:25,052 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:45:25,053 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:45:25,053 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:45:25,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-14 00:45:25,063] [main] java.version = 21 [testng] 00:45:25,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:45:25,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:25,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-14_00-45-25.log] [testng] 00:45:25,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-14 00:45:25,110] [main] testng.directory = /data [testng] [2024-11-14 00:45:25,110] [main] testng.configDirectory = /config [testng] [2024-11-14 00:45:25,119] [main] testng.multiplier = 1.0 [testng] [2024-11-14 00:45:25,119] [main] testng.in-memory = false [testng] [2024-11-14 00:45:25,120] [main] testng.allow-missing = false [testng] [2024-11-14 00:45:25,120] [main] user.language = en [testng] [2024-11-14 00:45:25,120] [main] user.country = ${user.country} [testng] [2024-11-14 00:45:25,120] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-14 00:45:43,262] [main] ---------------------------------------- [testng] [2024-11-14 00:45:43,262] [main] Total files: 259 [testng] [2024-11-14 00:45:43,262] [main] Scan time: 18.142 s (70 ms/file) [testng] [2024-11-14 00:45:43,263] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-14 00:51:33,532] [pool-1-thread-1] Initializing /data/molly/11OCT2.OIF: [testng] 00:51:33,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:51:33,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:33,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-14_00-51-33.log] [testng] 00:51:33,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27ee5250 - End of configuration. [testng] [2024-11-14 00:51:41,420] [pool-1-thread-12] Initializing /data/kay/IM2pg.oib: [testng] 00:51:41,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:51:41,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:41,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-14_00-51-41.log] [testng] 00:51:41,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d557241 - End of configuration. [testng] [2024-11-14 00:51:41,850] [pool-1-thread-11] Initializing /data/johannes/step2.bmp: [testng] 00:51:41,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:51:41,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:41,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-14_00-51-41.log] [testng] 00:51:41,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c070f00 - End of configuration. [testng] [2024-11-14 00:51:41,903] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] 00:51:41,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:51:41,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:41,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-14_00-51-41.log] [testng] 00:51:41,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c530fd - End of configuration. [testng] [2024-11-14 00:51:42,322] [pool-1-thread-9] Initializing /data/chris/missegragation-15.oib: [testng] 00:51:42,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:51:42,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:42,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-14_00-51-42.log] [testng] 00:51:42,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c27da4 - End of configuration. [testng] [2024-11-14 00:51:42,541] [pool-1-thread-8] Initializing /data/aryeh/1h_after_pdt.oib: [testng] 00:51:42,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:51:42,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:42,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-14_00-51-42.log] [testng] 00:51:42,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65792977 - End of configuration. [testng] [2024-11-14 00:51:44,970] [pool-1-thread-7] Initializing /data/allan/new_30min3_1z2.oib: [testng] 00:51:44,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:51:44,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:44,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-14_00-51-44.log] [testng] 00:51:44,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@500fb382 - End of configuration. [testng] [2024-11-14 00:51:45,229] [pool-1-thread-6] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] 00:51:45,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:51:45,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:45,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-14_00-51-45.log] [testng] 00:51:45,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19e04b61 - End of configuration. [testng] [2024-11-14 00:51:45,476] [pool-1-thread-5] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 00:51:45,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:51:45,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:45,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-14_00-51-45.log] [testng] 00:51:45,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e741ca5 - End of configuration. [testng] [2024-11-14 00:51:45,806] [pool-1-thread-4] Initializing /data/stefan/cytosol_01a.oif: [testng] 00:51:45,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:51:45,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:45,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-14_00-51-45.log] [testng] 00:51:45,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a7b5593 - End of configuration. [testng] [2024-11-14 00:52:08,027] [pool-1-thread-3] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 00:52:08,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:52:08,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:08,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-14_00-52-08.log] [testng] 00:52:08,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c28bd54 - End of configuration. [testng] [2024-11-14 00:52:08,256] [pool-1-thread-2] Initializing /data/glen/LUT issue/60x11.oif: [testng] 00:52:08,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:52:08,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:52:08,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-14_00-52-08.log] [testng] 00:52:08,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2084c319 - End of configuration. [testng] [2024-11-14 00:52:11,488] [pool-1-thread-11] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-14 00:52:15,517] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-11-14 00:52:16,636] [pool-1-thread-7] Initializing /data/david/Image0016.oib: [testng] [2024-11-14 00:52:16,970] [pool-1-thread-6] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-14 00:52:17,407] [pool-1-thread-10] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-14 00:52:17,802] [pool-1-thread-12] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-14 00:52:19,079] [pool-1-thread-10] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-14 00:52:20,180] [pool-1-thread-7] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-14 00:52:20,360] [pool-1-thread-6] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-14 00:52:23,465] [pool-1-thread-12] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-14 00:52:24,574] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] [2024-11-14 00:52:24,655] [pool-1-thread-10] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-14 00:52:25,452] [pool-1-thread-7] Initializing /data/johannes/step3.bmp: [testng] [2024-11-14 00:52:25,554] [pool-1-thread-3] Initializing /data/glen/Image0002.oif: [testng] [2024-11-14 00:52:27,935] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-14 00:52:28,712] [pool-1-thread-7] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-14 00:52:29,584] [pool-1-thread-12] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-14 00:52:30,226] [pool-1-thread-8] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-14 00:52:31,910] [pool-1-thread-9] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-14 00:52:32,760] [pool-1-thread-5] Initializing /data/johannes/step1.bmp: [testng] [2024-11-14 00:52:32,842] [pool-1-thread-8] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-14 00:52:33,528] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-14 00:52:35,067] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-14 00:52:35,939] [pool-1-thread-9] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-14 00:52:36,517] [pool-1-thread-8] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-14 00:52:38,614] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-14 00:52:39,474] [pool-1-thread-8] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-14 00:52:39,826] [pool-1-thread-9] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-14 00:52:40,217] [pool-1-thread-5] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-14 00:52:42,275] [pool-1-thread-9] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-14 00:52:43,020] [pool-1-thread-8] Initializing /data/michael/CELL3.oib: [testng] [2024-11-14 00:52:43,645] [pool-1-thread-6] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-14 00:52:44,079] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-14 00:52:45,103] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] [2024-11-14 00:52:46,272] [pool-1-thread-9] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-14 00:52:46,524] [pool-1-thread-8] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-14 00:52:47,967] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-14 00:52:48,420] [pool-1-thread-10] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-14 00:52:53,042] [pool-1-thread-11] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-14 00:52:53,437] [pool-1-thread-6] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-14 00:52:53,724] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-14 00:52:56,081] [pool-1-thread-8] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-14 00:52:57,181] [pool-1-thread-6] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-14 00:52:57,529] [pool-1-thread-7] Initializing /data/marc/V0606L.oib: [testng] [2024-11-14 00:52:58,904] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-14 00:53:01,912] [pool-1-thread-6] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-14 00:53:02,226] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-14 00:53:03,467] [pool-1-thread-11] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-14 00:53:04,595] [pool-1-thread-11] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-14 00:53:05,478] [pool-1-thread-6] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-14 00:53:05,826] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-14 00:53:09,538] [pool-1-thread-6] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-14 00:53:13,684] [pool-1-thread-5] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-14 00:53:22,272] [pool-1-thread-11] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-14 00:53:22,700] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] [2024-11-14 00:53:23,755] [pool-1-thread-7] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-14 00:53:25,471] [pool-1-thread-9] Initializing /data/marc/V0606J.oib: [testng] [2024-11-14 00:53:28,533] [pool-1-thread-11] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-14 00:53:46,513] [pool-1-thread-9] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-14 00:53:49,727] [pool-1-thread-12] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-14 00:54:11,724] [pool-1-thread-9] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-14 00:54:16,021] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-14 00:54:22,057] [pool-1-thread-8] Initializing /data/sten/01.oib: [testng] [2024-11-14 00:54:24,333] [pool-1-thread-9] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-14 00:54:26,568] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-14 00:54:29,107] [pool-1-thread-9] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-14 00:54:32,101] [pool-1-thread-8] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-14 00:54:37,888] [pool-1-thread-8] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-14 00:59:52,839] [pool-1-thread-7] Initializing /data/jae/Image0001.oib: [testng] [2024-11-14 00:59:59,423] [pool-1-thread-7] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-14 01:00:06,295] [pool-1-thread-7] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-14 01:02:40,641] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-14 01:02:45,091] [pool-1-thread-2] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-14 01:02:50,339] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-14 01:02:56,325] [pool-1-thread-2] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-14 01:03:01,509] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-14 01:03:26,873] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-14 01:03:31,004] [pool-1-thread-2] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-14 01:03:34,200] [pool-1-thread-2] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-14 01:03:38,169] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-14 01:03:41,636] [pool-1-thread-2] Initializing /data/christian/20min.oif: [testng] [2024-11-14 01:03:46,503] [pool-1-thread-9] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-14 01:03:52,258] [pool-1-thread-9] Initializing /data/glen/111407.oif: [testng] [2024-11-14 01:03:56,919] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] [2024-11-14 01:05:09,155] [pool-1-thread-3] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-14 01:05:14,649] [pool-1-thread-3] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-14 01:05:18,677] [pool-1-thread-3] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-14 01:07:06,993] [pool-1-thread-3] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-14 01:07:31,923] [pool-1-thread-10] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-14 01:08:06,184] [pool-1-thread-10] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-14 01:08:09,567] [pool-1-thread-11] Initializing /data/glen/simulstack.oib: [testng] [2024-11-14 01:08:14,312] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-14 01:08:20,750] [pool-1-thread-11] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-14 01:08:26,789] [pool-1-thread-11] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-14 01:08:35,576] [pool-1-thread-11] Initializing /data/allan/62909#1.oib: [testng] [2024-11-14 01:08:40,364] [pool-1-thread-11] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-14 01:08:53,386] [pool-1-thread-10] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-14 01:10:22,689] [pool-1-thread-3] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-14 01:11:08,949] [pool-1-thread-5] Initializing /data/brian/FLIP.oib: [testng] [2024-11-14 01:11:14,905] [pool-1-thread-5] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-14 01:11:43,354] [pool-1-thread-8] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-14 01:14:42,993] [pool-1-thread-9] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-14 01:14:55,417] [pool-1-thread-2] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-14 01:14:58,788] [pool-1-thread-2] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-14 01:15:03,298] [pool-1-thread-9] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-14 01:15:07,668] [pool-1-thread-2] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-14 01:15:08,827] [pool-1-thread-9] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-14 01:15:12,783] [pool-1-thread-6] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-14 01:15:18,138] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-14 01:15:23,402] [pool-1-thread-6] Initializing /data/karl/Image0009.oib: [testng] [2024-11-14 01:15:27,292] [pool-1-thread-6] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-14 01:15:45,207] [pool-1-thread-2] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-14 01:15:49,596] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-14 01:15:56,901] [pool-1-thread-2] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-14 01:18:56,763] [pool-1-thread-9] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-14 01:19:04,366] [pool-1-thread-9] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-14 01:19:11,188] [pool-1-thread-9] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-14 01:19:21,229] [pool-1-thread-5] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-14 01:19:28,615] [pool-1-thread-9] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-14 01:19:37,419] [pool-1-thread-9] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-14 01:22:00,967] [pool-1-thread-7] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-14 01:22:03,284] [pool-1-thread-7] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-14 01:23:25,199] [pool-1-thread-1] Initializing /data/monica/Image0056.oif: [testng] [2024-11-14 01:24:19,823] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-14 01:24:26,659] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-14 01:24:32,990] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-14 01:26:57,997] [pool-1-thread-7] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-14 01:27:08,754] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-14 01:27:14,565] [pool-1-thread-7] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-14 01:27:22,218] [pool-1-thread-7] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-14 01:27:28,039] [pool-1-thread-7] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-11-14 01:28:07,064] [pool-1-thread-7] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 02:12:30,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:12:30,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:30,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-14_02-12-30.log] [testng] 02:12:30,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3727def1 - End of configuration. [testng] 02:31:18,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:31:18,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:18,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-14_02-31-18.log] [testng] 02:31:18,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e130e50 - End of configuration. [testng] 02:37:10,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:37:10,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:10,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-14_02-37-10.log] [testng] 02:37:10,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a0d555f - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 111 minutes 48 seconds Finished: SUCCESS