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Started by upstream project "BIOFORMATS-test-repo" build number 255 originally caused by: Started by upstream project "Trigger" build number 279 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins10857108426032469851.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40292_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:19:45,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:19:45,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 04:19:45,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:19:45,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:19:45,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:19:45,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:19:45,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:19:45,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:19:45,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:19:45,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:19:45,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:19:45,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:19:46,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:19:46,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:19:46,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:19:46,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:19:46,146 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:19:46,146 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:19:46,146 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:19:46,147 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:19:46,147 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 04:19:46,148 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 04:19:46,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-14 04:19:46,157] [main] java.version = 21 [testng] 04:19:46,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:19:46,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:46,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-14_04-19-46.log] [testng] 04:19:46,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-14 04:19:46,204] [main] testng.directory = /data [testng] [2024-11-14 04:19:46,204] [main] testng.configDirectory = /config [testng] [2024-11-14 04:19:46,213] [main] testng.multiplier = 1.0 [testng] [2024-11-14 04:19:46,213] [main] testng.in-memory = false [testng] [2024-11-14 04:19:46,213] [main] testng.allow-missing = false [testng] [2024-11-14 04:19:46,213] [main] user.language = en [testng] [2024-11-14 04:19:46,213] [main] user.country = ${user.country} [testng] [2024-11-14 04:19:46,213] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-14 04:20:02,187] [main] ---------------------------------------- [testng] [2024-11-14 04:20:02,187] [main] Total files: 31 [testng] [2024-11-14 04:20:02,187] [main] Scan time: 15.973 s (515 ms/file) [testng] [2024-11-14 04:20:02,188] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-14 04:20:21,713] [pool-1-thread-1] Initializing /data/kraig/head.jp2: [testng] 04:20:21,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:20:21,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:21,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-14_04-20-21.log] [testng] 04:20:21,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f260bad - End of configuration. [testng] [2024-11-14 04:20:22,163] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2: [testng] 04:20:22,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:20:22,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:22,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-14_04-20-22.log] [testng] 04:20:22,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6052dbd0 - End of configuration. [testng] [2024-11-14 04:20:22,557] [pool-1-thread-11] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 04:20:22,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:20:22,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:22,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-14_04-20-22.log] [testng] 04:20:22,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f06ac30 - End of configuration. [testng] [2024-11-14 04:20:23,352] [pool-1-thread-10] Initializing /data/venu/Multichannel 3a.jpg: [testng] 04:20:23,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:20:23,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:23,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-14_04-20-23.log] [testng] 04:20:23,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67628b32 - End of configuration. [testng] [2024-11-14 04:20:23,520] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 04:20:23,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:20:23,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:23,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-14_04-20-23.log] [testng] 04:20:23,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@de3f435 - End of configuration. [testng] [2024-11-14 04:20:24,581] [pool-1-thread-8] Initializing /data/vikram/Captured 3.jp2: [testng] 04:20:24,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:20:24,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:24,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-14_04-20-24.log] [testng] 04:20:24,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fba5d2f - End of configuration. [testng] [2024-11-14 04:20:25,009] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jpc: [testng] 04:20:25,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:20:25,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:25,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-14_04-20-25.log] [testng] 04:20:25,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a48f90 - End of configuration. [testng] [2024-11-14 04:20:25,426] [pool-1-thread-6] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 04:20:25,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:20:25,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:25,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-14_04-20-25.log] [testng] 04:20:25,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c2b3118 - End of configuration. [testng] [2024-11-14 04:20:25,901] [pool-1-thread-5] Initializing /data/big-images/2kx2k.jpf: [testng] 04:20:25,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:20:25,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:25,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-14_04-20-25.log] [testng] 04:20:25,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40103fab - End of configuration. [testng] [2024-11-14 04:20:26,372] [pool-1-thread-4] Initializing /data/david/multichannel-2d test.jp2: [testng] 04:20:26,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:20:26,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:26,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-14_04-20-26.log] [testng] 04:20:26,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b3f016 - End of configuration. [testng] [2024-11-14 04:20:26,807] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 04:20:26,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:20:26,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:26,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-14_04-20-26.log] [testng] 04:20:26,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7240deac - End of configuration. [testng] [2024-11-14 04:20:27,275] [pool-1-thread-2] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 04:20:27,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:20:27,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:20:27,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-14_04-20-27.log] [testng] 04:20:27,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1675228b - End of configuration. [testng] [2024-11-14 04:20:32,050] [pool-1-thread-10] Initializing /data/vikram/Captured 5.jp2: [testng] [2024-11-14 04:20:33,251] [pool-1-thread-7] Initializing /data/david/000000_000001.jpx: [testng] [2024-11-14 04:20:33,837] [pool-1-thread-12] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-11-14 04:20:34,457] [pool-1-thread-8] Initializing /data/vikram/Captured 4.jp2: [testng] [2024-11-14 04:20:34,942] [pool-1-thread-1] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-11-14 04:20:37,093] [pool-1-thread-9] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-11-14 04:20:38,520] [pool-1-thread-6] Initializing /data/frans/flower.jp2: [testng] [2024-11-14 04:20:39,856] [pool-1-thread-10] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-11-14 04:20:41,158] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-11-14 04:20:42,500] [pool-1-thread-8] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-11-14 04:20:43,222] [pool-1-thread-1] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-11-14 04:20:45,471] [pool-1-thread-7] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-11-14 04:20:46,086] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-11-14 04:20:47,539] [pool-1-thread-10] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-11-14 04:20:49,374] [pool-1-thread-1] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-11-14 04:20:51,689] [pool-1-thread-12] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-11-14 04:20:52,214] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-11-14 04:20:53,429] [pool-1-thread-3] Initializing /data/david/cy5-tph.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 28 seconds Finished: SUCCESS