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Started by upstream project "BIOFORMATS-test-repo" build number 257 originally caused by: Started by upstream project "Trigger" build number 281 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins4958224106550915224.sh + '[' pict = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40515_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:46:25,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:46:25,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:46:25,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:46:25,671 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:46:25,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:46:25,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:46:25,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:46:25,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:46:25,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:46:25,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:46:25,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:46:25,673 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:46:25,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:46:25,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:46:25,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:46:25,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:46:25,874 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:46:25,874 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:46:25,874 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:46:25,874 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:46:25,874 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:46:25,875 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:46:25,875 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-16 00:46:25,884] [main] java.version = 11.0.16 [testng] 00:46:25,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:46:25,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:25,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-16_00-46-25.log] [testng] 00:46:25,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-16 00:46:25,934] [main] testng.directory = /data [testng] [2024-11-16 00:46:25,934] [main] testng.configDirectory = /config [testng] [2024-11-16 00:46:25,944] [main] testng.multiplier = 1.0 [testng] [2024-11-16 00:46:25,945] [main] testng.in-memory = false [testng] [2024-11-16 00:46:25,945] [main] testng.allow-missing = false [testng] [2024-11-16 00:46:25,945] [main] user.language = en [testng] [2024-11-16 00:46:25,946] [main] user.country = ${user.country} [testng] [2024-11-16 00:46:25,946] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-16 00:46:26,535] [main] ---------------------------------------- [testng] [2024-11-16 00:46:26,535] [main] Total files: 25 [testng] [2024-11-16 00:46:26,536] [main] Scan time: 0.589 s (23 ms/file) [testng] [2024-11-16 00:46:26,536] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-16 00:46:28,709] [pool-1-thread-1] Initializing /data/brian/images/TRU256.PCT: [testng] 00:46:28,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:46:28,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:28,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-16_00-46-28.log] [testng] 00:46:28,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@413210e3 - End of configuration. [testng] [2024-11-16 00:46:28,764] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 00:46:28,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:46:28,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:28,765 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-16_00-46-28.log] [testng] 00:46:28,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37c6d2f7 - End of configuration. [testng] [2024-11-16 00:46:28,811] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT: [testng] 00:46:28,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:46:28,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:28,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-16_00-46-28.log] [testng] 00:46:28,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70a550df - End of configuration. [testng] [2024-11-16 00:46:28,864] [pool-1-thread-10] Initializing /data/misc/swlogo.pict: [testng] 00:46:28,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:46:28,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:28,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-16_00-46-28.log] [testng] 00:46:28,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@699338c9 - End of configuration. [testng] [2024-11-16 00:46:28,914] [pool-1-thread-9] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:46:28,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:46:28,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:28,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-16_00-46-28.log] [testng] 00:46:28,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@629275ca - End of configuration. [testng] [2024-11-16 00:46:28,964] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] 00:46:28,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:46:28,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:28,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-16_00-46-28.log] [testng] 00:46:28,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51912cee - End of configuration. [testng] [2024-11-16 00:46:28,971] [pool-1-thread-7] Initializing /data/jqd/sixteenBit.pict: [testng] 00:46:28,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:46:28,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:28,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-16_00-46-28.log] [testng] 00:46:28,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153f88b6 - End of configuration. [testng] [2024-11-16 00:46:29,019] [pool-1-thread-6] Initializing /data/jqd/mire32.pict: [testng] 00:46:29,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:46:29,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:29,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-16_00-46-29.log] [testng] 00:46:29,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c37dfb - End of configuration. [testng] [2024-11-16 00:46:29,065] [pool-1-thread-5] Initializing /data/jqd/mireSixteen.pict: [testng] 00:46:29,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:46:29,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:29,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-16_00-46-29.log] [testng] 00:46:29,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d712584 - End of configuration. [testng] [2024-11-16 00:46:29,104] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT: [testng] 00:46:29,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:46:29,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:29,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-16_00-46-29.log] [testng] 00:46:29,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2973fbc3 - End of configuration. [testng] [2024-11-16 00:46:29,156] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 00:46:29,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:46:29,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:29,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-16_00-46-29.log] [testng] 00:46:29,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b0ffa2a - End of configuration. [testng] [2024-11-16 00:46:29,302] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 00:46:29,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:46:29,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:29,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-16_00-46-29.log] [testng] 00:46:29,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31dcf4c1 - End of configuration. [testng] [2024-11-16 00:46:30,960] [pool-1-thread-8] Initializing /data/misc/planet2.pict: [testng] [2024-11-16 00:46:31,016] [pool-1-thread-6] Initializing /data/brian/images/BLU.PCT: [testng] [2024-11-16 00:46:31,064] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-11-16 00:46:31,282] [pool-1-thread-9] Initializing /data/brian/images/BLK.PCT: [testng] [2024-11-16 00:46:31,370] [pool-1-thread-1] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-11-16 00:46:31,437] [pool-1-thread-11] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-11-16 00:46:31,497] [pool-1-thread-12] Initializing /data/brian/images/GRN.PCT: [testng] [2024-11-16 00:46:31,668] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-11-16 00:46:31,773] [pool-1-thread-10] Initializing /data/jqd/32bit.pict: [testng] [2024-11-16 00:46:31,847] [pool-1-thread-7] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-11-16 00:46:32,559] [pool-1-thread-6] Initializing /data/misc/planet.pict: [testng] [2024-11-16 00:46:32,671] [pool-1-thread-8] Initializing /data/brian/images/RED.PCT: [testng] [2024-11-16 00:46:32,841] [pool-1-thread-2] Initializing /data/brian/images/VENUS.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS