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Started by upstream project "BIOFORMATS-test-repo" build number 257 originally caused by: Started by upstream project "Trigger" build number 281 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5284568703260010218.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40553_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:47:38,749 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:47:38,750 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 01:47:38,750 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:47:38,751 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:47:38,752 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:47:38,752 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:47:38,752 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:47:38,752 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:47:38,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:47:38,754 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:47:38,754 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:47:38,754 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:47:38,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:47:38,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:47:38,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:47:38,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:47:38,944 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:47:38,945 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:47:38,945 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:47:38,945 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:47:38,945 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 01:47:38,946 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 01:47:38,946 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-16 01:47:38,954] [main] java.version = 11.0.16 [testng] 01:47:38,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:47:38,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:38,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-16_01-47-38.log] [testng] 01:47:39,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-16 01:47:39,002] [main] testng.directory = /data [testng] [2024-11-16 01:47:39,002] [main] testng.configDirectory = /config [testng] [2024-11-16 01:47:39,011] [main] testng.multiplier = 1.0 [testng] [2024-11-16 01:47:39,012] [main] testng.in-memory = false [testng] [2024-11-16 01:47:39,012] [main] testng.allow-missing = false [testng] [2024-11-16 01:47:39,013] [main] user.language = en [testng] [2024-11-16 01:47:39,013] [main] user.country = ${user.country} [testng] [2024-11-16 01:47:39,013] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-16 01:50:54,812] [main] ---------------------------------------- [testng] [2024-11-16 01:50:54,812] [main] Total files: 268 [testng] [2024-11-16 01:50:54,812] [main] Scan time: 195.799 s (730 ms/file) [testng] [2024-11-16 01:50:54,812] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-16 01:55:44,834] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] 01:55:44,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:55:44,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:44,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-16_01-55-44.log] [testng] 01:55:44,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24c082a1 - End of configuration. [testng] [2024-11-16 01:55:45,415] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] 01:55:45,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:55:45,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:45,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-16_01-55-45.log] [testng] 01:55:45,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7336ed37 - End of configuration. [testng] [2024-11-16 01:55:45,701] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] 01:55:45,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:55:45,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:45,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-16_01-55-45.log] [testng] 01:55:45,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c1010d8 - End of configuration. [testng] [2024-11-16 01:55:47,260] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] 01:55:47,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:55:47,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:47,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-16_01-55-47.log] [testng] 01:55:47,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64c0482a - End of configuration. [testng] [2024-11-16 01:55:47,656] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] 01:55:47,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:55:47,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:47,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-16_01-55-47.log] [testng] 01:55:47,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53182484 - End of configuration. [testng] [2024-11-16 01:55:48,065] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 01:55:48,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:55:48,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:48,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-16_01-55-48.log] [testng] 01:55:48,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@497e252c - End of configuration. [testng] [2024-11-16 01:55:48,408] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] 01:55:48,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:55:48,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:48,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-16_01-55-48.log] [testng] 01:55:48,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54496c6d - End of configuration. [testng] [2024-11-16 01:55:49,551] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] 01:55:49,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:55:49,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:49,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-16_01-55-49.log] [testng] 01:55:49,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@794b3b0a - End of configuration. [testng] [2024-11-16 01:55:49,869] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 01:55:49,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:55:49,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:49,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-16_01-55-49.log] [testng] 01:55:49,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66e9ed07 - End of configuration. [testng] [2024-11-16 01:55:50,209] [pool-1-thread-4] Initializing /data/steve/FITS/M13.fits: [testng] 01:55:50,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:55:50,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:50,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-16_01-55-50.log] [testng] 01:55:50,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5161eacf - End of configuration. [testng] [2024-11-16 01:55:50,369] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] 01:55:50,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:55:50,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:50,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-16_01-55-50.log] [testng] 01:55:50,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@266e47f5 - End of configuration. [testng] [2024-11-16 01:55:51,500] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] 01:55:51,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:55:51,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:51,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-16_01-55-51.log] [testng] 01:55:51,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10ed7719 - End of configuration. [testng] [2024-11-16 01:55:55,466] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-11-16 01:55:57,292] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-11-16 01:55:57,706] [pool-1-thread-9] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-11-16 01:55:59,034] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-11-16 01:56:00,362] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-11-16 01:56:00,643] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-11-16 01:56:01,742] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-11-16 01:56:06,160] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-11-16 01:56:06,510] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-11-16 01:56:07,216] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-11-16 01:56:07,470] [pool-1-thread-4] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-11-16 01:56:08,840] [pool-1-thread-11] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-11-16 01:56:10,164] [pool-1-thread-3] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-11-16 01:56:11,437] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-11-16 01:56:11,877] [pool-1-thread-7] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-11-16 01:56:13,577] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-11-16 01:56:14,131] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-11-16 01:56:16,219] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-11-16 01:56:16,841] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-11-16 01:56:18,128] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-11-16 01:56:18,525] [pool-1-thread-7] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-11-16 01:56:20,006] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-11-16 01:56:20,256] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-11-16 01:56:20,905] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-11-16 01:56:21,167] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-11-16 01:56:22,977] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-11-16 01:56:24,399] [pool-1-thread-1] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-11-16 01:56:25,960] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-11-16 01:56:26,900] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-11-16 01:56:27,373] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-11-16 01:56:27,794] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-11-16 01:56:28,847] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-11-16 01:56:29,671] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-11-16 01:56:31,740] [pool-1-thread-4] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-11-16 01:56:33,178] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-11-16 01:56:34,434] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-11-16 01:56:34,654] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-11-16 01:56:35,155] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-11-16 01:56:35,686] [pool-1-thread-7] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-11-16 01:56:37,660] [pool-1-thread-3] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-11-16 01:56:38,694] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-11-16 01:56:40,089] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-11-16 01:56:41,587] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-11-16 01:56:41,913] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-11-16 01:56:42,512] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-11-16 01:56:43,935] [pool-1-thread-9] Initializing /data/steve/FITS/M51.fits: [testng] [2024-11-16 01:56:44,075] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-11-16 01:56:47,407] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-11-16 01:56:48,837] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-11-16 01:56:50,363] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-11-16 01:56:51,726] [pool-1-thread-12] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-11-16 01:56:52,244] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-11-16 01:56:53,558] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-11-16 01:56:54,765] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-11-16 01:56:55,108] [pool-1-thread-9] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-11-16 01:56:55,700] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-11-16 01:56:59,219] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-11-16 01:56:59,818] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-11-16 01:57:00,343] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-11-16 01:57:00,834] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-11-16 01:57:01,208] [pool-1-thread-12] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-11-16 01:57:02,383] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-11-16 01:57:02,757] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-11-16 01:57:03,036] [pool-1-thread-1] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-11-16 01:57:05,508] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-11-16 01:57:06,077] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-11-16 01:57:07,423] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-11-16 01:57:08,209] [pool-1-thread-5] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-11-16 01:57:08,525] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-11-16 01:57:09,012] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-11-16 01:57:10,327] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-11-16 01:57:10,651] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-11-16 01:57:11,019] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-11-16 01:57:11,156] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-11-16 01:57:11,936] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-11-16 01:57:13,905] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-11-16 01:57:15,893] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-11-16 01:57:16,598] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-11-16 01:57:17,922] [pool-1-thread-12] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-11-16 01:57:18,364] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-11-16 01:57:18,592] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-11-16 01:57:18,922] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-11-16 01:57:19,128] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-11-16 01:57:20,143] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-11-16 01:57:22,571] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-11-16 01:57:23,896] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-11-16 01:57:24,354] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-11-16 01:57:24,777] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-11-16 01:57:26,108] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-11-16 01:57:26,311] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-11-16 01:57:26,827] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-11-16 01:57:27,373] [pool-1-thread-4] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-11-16 01:57:28,472] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-11-16 01:57:29,614] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-11-16 01:57:30,292] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-11-16 01:57:30,724] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-11-16 01:57:31,519] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-11-16 01:57:31,958] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-11-16 01:57:32,105] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-11-16 01:57:33,612] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-11-16 01:57:34,047] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-11-16 01:57:34,518] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-11-16 01:57:35,000] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-11-16 01:57:36,350] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-11-16 01:57:37,597] [pool-1-thread-12] Initializing /data/steve/FITS/M104.fits: [testng] [2024-11-16 01:57:37,726] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-11-16 01:57:38,356] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-11-16 01:57:39,012] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-11-16 01:57:40,113] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-11-16 01:57:40,639] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-11-16 01:57:41,140] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-11-16 01:57:42,388] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-11-16 01:57:42,767] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-11-16 01:57:44,409] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-11-16 01:57:44,706] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-11-16 01:57:45,377] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-11-16 01:57:45,848] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-11-16 01:57:47,475] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-11-16 01:57:48,119] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-11-16 01:57:49,333] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-11-16 01:57:49,730] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-11-16 01:57:50,091] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-11-16 01:57:50,605] [pool-1-thread-8] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-11-16 01:57:51,993] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-11-16 01:57:52,758] [pool-1-thread-4] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-11-16 01:57:54,119] [pool-1-thread-12] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-11-16 01:57:55,760] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-11-16 01:57:56,543] [pool-1-thread-1] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-11-16 01:57:57,200] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-11-16 01:57:57,626] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-11-16 01:57:58,013] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-11-16 01:57:58,528] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-11-16 01:57:59,495] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-11-16 01:57:59,979] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-11-16 01:58:00,414] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-11-16 01:58:01,364] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-11-16 01:58:02,575] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-11-16 01:58:03,257] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-11-16 01:58:03,728] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-11-16 01:58:04,208] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-11-16 01:58:04,596] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-11-16 01:58:05,025] [pool-1-thread-1] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-11-16 01:58:05,336] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-11-16 01:58:05,981] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-11-16 01:58:06,542] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-11-16 01:58:07,837] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-11-16 01:58:08,636] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-11-16 01:58:10,232] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 minutes 37 seconds Finished: SUCCESS