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Started by upstream project "BIOFORMATS-test-repo" build number 258 originally caused by: Started by upstream project "Trigger" build number 282 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4159275929591912880.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40717_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:45:00,208 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:45:00,209 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:45:00,209 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:45:00,210 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:45:00,211 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:45:00,211 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:45:00,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:45:00,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:45:00,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:45:00,213 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:45:00,214 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:45:00,214 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:45:00,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:45:00,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:45:00,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:45:00,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:45:00,420 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:45:00,421 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:45:00,421 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:45:00,421 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:45:00,421 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:45:00,422 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:45:00,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-17 01:45:00,432] [main] java.version = 17.0.2 [testng] 01:45:00,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:45:00,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:00,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-17_01-45-00.log] [testng] 01:45:00,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-17 01:45:00,482] [main] testng.directory = /data [testng] [2024-11-17 01:45:00,483] [main] testng.configDirectory = /config [testng] [2024-11-17 01:45:00,492] [main] testng.multiplier = 1.0 [testng] [2024-11-17 01:45:00,493] [main] testng.in-memory = false [testng] [2024-11-17 01:45:00,493] [main] testng.allow-missing = false [testng] [2024-11-17 01:45:00,493] [main] user.language = en [testng] [2024-11-17 01:45:00,493] [main] user.country = ${user.country} [testng] [2024-11-17 01:45:00,493] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-17 01:47:40,170] [main] ---------------------------------------- [testng] [2024-11-17 01:47:40,170] [main] Total files: 268 [testng] [2024-11-17 01:47:40,170] [main] Scan time: 159.676 s (595 ms/file) [testng] [2024-11-17 01:47:40,170] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-17 01:51:14,307] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] 01:51:14,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:51:14,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:14,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-17_01-51-14.log] [testng] 01:51:14,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c93ad19 - End of configuration. [testng] [2024-11-17 01:51:14,688] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] 01:51:14,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:51:14,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:14,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-17_01-51-14.log] [testng] 01:51:14,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46cfa7c4 - End of configuration. [testng] [2024-11-17 01:51:14,911] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] 01:51:14,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:51:14,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:14,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-17_01-51-14.log] [testng] 01:51:14,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@93012bd - End of configuration. [testng] [2024-11-17 01:51:15,178] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 01:51:15,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:51:15,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:15,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-17_01-51-15.log] [testng] 01:51:15,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cbc69b5 - End of configuration. [testng] [2024-11-17 01:51:15,414] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 01:51:15,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:51:15,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:15,415 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-17_01-51-15.log] [testng] 01:51:15,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bdd8e78 - End of configuration. [testng] [2024-11-17 01:51:15,666] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] 01:51:15,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:51:15,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:15,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-17_01-51-15.log] [testng] 01:51:15,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6423d2ec - End of configuration. [testng] [2024-11-17 01:51:15,913] [pool-1-thread-7] Initializing /data/steve/TIFF/HAFF SEM: [testng] 01:51:15,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:51:15,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:15,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-17_01-51-15.log] [testng] 01:51:15,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e7952f - End of configuration. [testng] [2024-11-17 01:51:16,813] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] 01:51:16,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:51:16,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:16,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-17_01-51-16.log] [testng] 01:51:16,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cd5c641 - End of configuration. [testng] [2024-11-17 01:51:17,044] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] 01:51:17,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:51:17,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:17,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-17_01-51-17.log] [testng] 01:51:17,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bf042b4 - End of configuration. [testng] [2024-11-17 01:51:17,269] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits: [testng] 01:51:17,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:51:17,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:17,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-17_01-51-17.log] [testng] 01:51:17,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12e33669 - End of configuration. [testng] [2024-11-17 01:51:17,345] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] 01:51:17,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:51:17,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:17,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-17_01-51-17.log] [testng] 01:51:17,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f549148 - End of configuration. [testng] [2024-11-17 01:51:18,157] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 01:51:18,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:51:18,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:18,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-17_01-51-18.log] [testng] 01:51:18,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18720faf - End of configuration. [testng] [2024-11-17 01:51:21,243] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-11-17 01:51:22,358] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-11-17 01:51:22,626] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-11-17 01:51:23,445] [pool-1-thread-8] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-11-17 01:51:23,679] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-11-17 01:51:24,545] [pool-1-thread-11] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-11-17 01:51:24,861] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-11-17 01:51:25,974] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-11-17 01:51:27,748] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-11-17 01:51:28,239] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-11-17 01:51:28,628] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-11-17 01:51:28,869] [pool-1-thread-4] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-11-17 01:51:29,531] [pool-1-thread-6] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-11-17 01:51:30,513] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-11-17 01:51:30,753] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-11-17 01:51:31,009] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-11-17 01:51:31,256] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-11-17 01:51:34,010] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-11-17 01:51:34,541] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-11-17 01:51:35,550] [pool-1-thread-12] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-11-17 01:51:35,707] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-11-17 01:51:35,858] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-11-17 01:51:36,273] [pool-1-thread-9] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-11-17 01:51:37,099] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-11-17 01:51:37,461] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-11-17 01:51:38,106] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-11-17 01:51:39,895] [pool-1-thread-3] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-11-17 01:51:40,200] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-11-17 01:51:41,882] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-11-17 01:51:42,208] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-11-17 01:51:42,499] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-11-17 01:51:42,776] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-11-17 01:51:43,655] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-11-17 01:51:44,029] [pool-1-thread-10] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-11-17 01:51:45,344] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-11-17 01:51:47,414] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-11-17 01:51:47,879] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-11-17 01:51:48,078] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-11-17 01:51:49,095] [pool-1-thread-1] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-11-17 01:51:50,211] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-11-17 01:51:50,497] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-11-17 01:51:51,940] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-11-17 01:51:52,563] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-11-17 01:51:52,756] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-11-17 01:51:54,320] [pool-1-thread-6] Initializing /data/steve/FITS/M104.fits: [testng] [2024-11-17 01:51:54,456] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-11-17 01:51:54,831] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-11-17 01:51:55,893] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-11-17 01:51:57,219] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-11-17 01:51:58,567] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-11-17 01:52:00,009] [pool-1-thread-3] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-11-17 01:52:00,880] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-11-17 01:52:02,428] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-11-17 01:52:03,759] [pool-1-thread-6] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-11-17 01:52:05,130] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-11-17 01:52:05,532] [pool-1-thread-5] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-11-17 01:52:05,984] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-11-17 01:52:06,156] [pool-1-thread-2] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-11-17 01:52:06,664] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-11-17 01:52:08,664] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-11-17 01:52:09,423] [pool-1-thread-3] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-11-17 01:52:10,921] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-11-17 01:52:11,417] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-11-17 01:52:11,652] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-11-17 01:52:11,868] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-11-17 01:52:13,284] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-11-17 01:52:14,682] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-11-17 01:52:15,199] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-11-17 01:52:15,630] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-11-17 01:52:16,783] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-11-17 01:52:17,642] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-11-17 01:52:18,726] [pool-1-thread-7] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-11-17 01:52:19,393] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-11-17 01:52:21,465] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-11-17 01:52:23,245] [pool-1-thread-8] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-11-17 01:52:27,834] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-11-17 01:52:31,456] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-11-17 01:52:33,222] [pool-1-thread-4] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-11-17 01:52:33,618] [pool-1-thread-3] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-11-17 01:52:34,192] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-11-17 01:52:34,465] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-11-17 01:52:34,735] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-11-17 01:52:35,171] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-11-17 01:52:36,087] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-11-17 01:52:38,359] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-11-17 01:52:38,780] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-11-17 01:52:39,041] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-11-17 01:52:39,467] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-11-17 01:52:41,398] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-11-17 01:52:42,590] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-11-17 01:52:43,085] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-11-17 01:52:43,198] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-11-17 01:52:44,978] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-11-17 01:52:45,618] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-11-17 01:52:46,134] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-11-17 01:52:46,530] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-11-17 01:52:47,361] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-11-17 01:52:47,793] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-11-17 01:52:47,924] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-11-17 01:52:49,270] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-11-17 01:52:49,610] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-11-17 01:52:49,986] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-11-17 01:52:50,615] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-11-17 01:52:51,859] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-11-17 01:52:53,088] [pool-1-thread-6] Initializing /data/steve/FITS/M13.fits: [testng] [2024-11-17 01:52:53,964] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-11-17 01:52:55,491] [pool-1-thread-1] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-11-17 01:52:57,479] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-11-17 01:52:58,239] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-11-17 01:52:58,768] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-11-17 01:52:59,157] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-11-17 01:52:59,715] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-11-17 01:53:00,850] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-11-17 01:53:01,187] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-11-17 01:53:01,380] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-11-17 01:53:03,623] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-11-17 01:53:04,404] [pool-1-thread-9] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-11-17 01:53:06,290] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-11-17 01:53:06,811] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-11-17 01:53:07,337] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-11-17 01:53:07,833] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-11-17 01:53:08,051] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-11-17 01:53:09,712] [pool-1-thread-6] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-11-17 01:53:11,033] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-11-17 01:53:12,303] [pool-1-thread-1] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-11-17 01:53:13,571] [pool-1-thread-3] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-11-17 01:53:14,705] [pool-1-thread-12] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-11-17 01:53:15,878] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-11-17 01:53:17,088] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-11-17 01:53:17,480] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-11-17 01:53:18,477] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-11-17 01:53:19,579] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-11-17 01:53:21,058] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-11-17 01:53:21,427] [pool-1-thread-5] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-11-17 01:53:22,126] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-11-17 01:53:22,422] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-11-17 01:53:23,024] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-11-17 01:53:24,318] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-11-17 01:53:24,640] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-11-17 01:53:25,530] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-11-17 01:53:25,994] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-11-17 01:53:26,451] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-11-17 01:53:26,887] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-11-17 01:53:27,264] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-11-17 01:53:27,877] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-11-17 01:53:28,182] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-11-17 01:53:28,612] [pool-1-thread-3] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-11-17 01:53:29,530] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 minutes 41 seconds Finished: SUCCESS