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Started by upstream project "BIOFORMATS-test-repo" build number 258 originally caused by: Started by upstream project "Trigger" build number 282 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins16433567781607432921.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40757_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:07:31,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:07:31,401 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 03:07:31,401 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:07:31,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:07:31,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:07:31,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:07:31,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:07:31,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:07:31,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:07:31,404 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:07:31,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:07:31,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:07:31,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:07:31,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:07:31,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:07:31,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:07:31,609 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:07:31,609 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:07:31,609 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:07:31,610 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:07:31,610 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 03:07:31,611 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 03:07:31,611 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-17 03:07:31,620] [main] java.version = 17.0.2 [testng] 03:07:31,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:07:31,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:07:31,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-17_03-07-31.log] [testng] 03:07:31,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-17 03:07:31,671] [main] testng.directory = /data [testng] [2024-11-17 03:07:31,671] [main] testng.configDirectory = /config [testng] [2024-11-17 03:07:31,680] [main] testng.multiplier = 1.0 [testng] [2024-11-17 03:07:31,680] [main] testng.in-memory = false [testng] [2024-11-17 03:07:31,681] [main] testng.allow-missing = false [testng] [2024-11-17 03:07:31,681] [main] user.language = en [testng] [2024-11-17 03:07:31,681] [main] user.country = ${user.country} [testng] [2024-11-17 03:07:31,681] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-17 03:08:28,888] [main] ---------------------------------------- [testng] [2024-11-17 03:08:28,888] [main] Total files: 15735 [testng] [2024-11-17 03:08:28,888] [main] Scan time: 57.207 s (3 ms/file) [testng] [2024-11-17 03:08:28,888] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-17 03:09:25,401] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 03:09:25,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:09:25,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:25,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-17_03-09-25.log] [testng] 03:09:25,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77d2faf8 - End of configuration. [testng] [2024-11-17 03:09:25,697] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 03:09:25,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:09:25,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:25,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-17_03-09-25.log] [testng] 03:09:25,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@679f858e - End of configuration. [testng] [2024-11-17 03:09:26,433] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 03:09:26,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:09:26,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:26,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-17_03-09-26.log] [testng] 03:09:26,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@296ef60b - End of configuration. [testng] [2024-11-17 03:09:26,751] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 03:09:26,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:09:26,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:26,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-17_03-09-26.log] [testng] 03:09:26,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4032987e - End of configuration. [testng] [2024-11-17 03:09:28,245] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 03:09:28,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:09:28,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:28,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-17_03-09-28.log] [testng] 03:09:28,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d0995c8 - End of configuration. [testng] [2024-11-17 03:09:28,791] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 03:09:28,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:09:28,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:28,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-17_03-09-28.log] [testng] 03:09:28,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@612c0260 - End of configuration. [testng] [2024-11-17 03:09:29,399] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 03:09:29,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:09:29,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:29,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-17_03-09-29.log] [testng] 03:09:29,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16463d5c - End of configuration. [testng] [2024-11-17 03:09:29,920] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 03:09:29,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:09:29,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:29,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-17_03-09-29.log] [testng] 03:09:29,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35248130 - End of configuration. [testng] [2024-11-17 03:09:30,417] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 03:09:30,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:09:30,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:30,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-17_03-09-30.log] [testng] 03:09:30,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e4f9772 - End of configuration. [testng] [2024-11-17 03:09:30,797] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 03:09:30,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:09:30,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:30,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-17_03-09-30.log] [testng] 03:09:30,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46ba660e - End of configuration. [testng] [2024-11-17 03:09:31,147] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 03:09:31,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:09:31,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:31,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-17_03-09-31.log] [testng] 03:09:31,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4daf266f - End of configuration. [testng] [2024-11-17 03:09:31,446] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 03:09:31,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:09:31,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:31,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-17_03-09-31.log] [testng] 03:09:31,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4494f4e5 - End of configuration. [testng] [2024-11-17 03:09:42,399] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-11-17 03:09:47,205] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-11-17 03:09:48,117] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-11-17 03:10:03,793] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-11-17 03:11:37,190] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-11-17 03:11:40,450] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-11-17 03:11:47,715] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-11-17 03:12:01,119] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-11-17 03:12:27,785] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-11-17 03:12:44,485] [pool-1-thread-4] Initializing /data/converted/michel/a.tif: [testng] [2024-11-17 03:12:47,698] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-11-17 03:12:56,090] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-11-17 03:13:04,567] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-11-17 03:13:19,179] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-11-17 03:13:26,488] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-11-17 03:13:36,970] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-11-17 03:13:42,587] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-11-17 03:13:44,758] [pool-1-thread-12] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-11-17 03:13:53,786] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-11-17 03:13:54,854] [pool-1-thread-6] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-11-17 03:14:10,603] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-11-17 03:14:16,737] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-11-17 03:14:25,034] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-11-17 03:14:31,174] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-11-17 03:14:52,026] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-11-17 03:14:54,708] [pool-1-thread-6] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-11-17 03:15:05,952] [pool-1-thread-2] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-11-17 03:15:08,647] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-11-17 03:15:13,569] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-11-17 03:15:30,924] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-11-17 03:16:00,673] [pool-1-thread-12] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-11-17 03:16:31,534] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-11-17 03:16:52,676] [pool-1-thread-12] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-11-17 03:17:05,963] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-11-17 03:17:13,478] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-11-17 03:19:51,772] [pool-1-thread-7] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-11-17 03:20:29,384] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-11-17 03:21:02,915] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif: [testng] [2024-11-17 03:21:31,053] [pool-1-thread-4] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-11-17 03:21:32,673] [pool-1-thread-1] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-11-17 03:22:10,962] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-11-17 03:22:22,946] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-11-17 03:22:44,596] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-11-17 03:22:47,282] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-11-17 03:23:05,954] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-11-17 03:24:32,163] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-11-17 03:26:17,968] [pool-1-thread-7] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-11-17 03:28:33,112] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-11-17 03:28:46,671] [pool-1-thread-10] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-11-17 03:29:06,063] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-11-17 03:29:46,397] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-11-17 03:30:04,295] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-11-17 03:34:13,222] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-11-17 03:34:43,199] [pool-1-thread-3] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-11-17 03:34:46,934] [pool-1-thread-8] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-11-17 03:35:07,001] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-11-17 03:35:27,671] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-11-17 03:36:54,253] [pool-1-thread-1] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-11-17 03:37:21,529] [pool-1-thread-1] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-11-17 03:37:29,593] [pool-1-thread-10] Initializing /data/scott/Slide133-04.tif: [testng] [2024-11-17 03:37:33,503] [pool-1-thread-4] Initializing /data/converted/converted/2chz.tif: [testng] [2024-11-17 03:37:59,357] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-11-17 03:39:34,725] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-11-17 03:40:54,686] [pool-1-thread-4] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-11-17 03:41:01,130] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-11-17 03:41:11,346] [pool-1-thread-1] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-11-17 03:41:38,749] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-11-17 03:41:55,135] [pool-1-thread-5] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-11-17 03:42:21,155] [pool-1-thread-5] Initializing /data/converted/michel/c.tif: [testng] [2024-11-17 03:42:35,131] [pool-1-thread-7] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-11-17 03:42:44,014] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-11-17 03:43:05,030] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-11-17 03:43:13,305] [pool-1-thread-3] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-11-17 03:43:38,840] [pool-1-thread-7] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-11-17 03:45:16,272] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-11-17 03:45:42,919] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-11-17 03:46:09,813] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-11-17 03:46:53,581] [pool-1-thread-8] Initializing /data/converted/dietmar/138.tif: [testng] [2024-11-17 03:47:39,737] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-11-17 03:48:52,092] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-11-17 03:50:41,307] [pool-1-thread-4] Initializing /data/converted/dietmar/137.tif: [testng] [2024-11-17 03:51:29,560] [pool-1-thread-1] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-11-17 03:51:35,498] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-11-17 03:52:23,264] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-11-17 03:53:10,718] [pool-1-thread-6] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-11-17 03:53:18,464] [pool-1-thread-1] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-11-17 03:53:19,988] [pool-1-thread-3] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-11-17 03:53:37,237] [pool-1-thread-7] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-11-17 03:53:43,379] [pool-1-thread-6] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-11-17 03:54:02,065] [pool-1-thread-1] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-11-17 03:54:05,068] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-11-17 03:54:11,545] [pool-1-thread-6] Initializing /data/scott/Slide133-11.tif: [testng] [2024-11-17 03:54:30,562] [pool-1-thread-8] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-11-17 03:54:33,704] [pool-1-thread-1] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-11-17 03:54:38,810] [pool-1-thread-6] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-11-17 03:55:17,309] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-11-17 03:55:37,809] [pool-1-thread-1] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-11-17 03:55:43,539] [pool-1-thread-12] Initializing /data/converted/michel/d.tif: [testng] [2024-11-17 03:55:45,094] [pool-1-thread-10] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-11-17 03:56:09,378] [pool-1-thread-10] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-11-17 03:56:12,152] [pool-1-thread-12] Initializing /data/scott/Slide133-01.tif: [testng] [2024-11-17 03:56:29,592] [pool-1-thread-3] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-11-17 03:56:31,328] [pool-1-thread-10] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-11-17 03:56:38,970] [pool-1-thread-12] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-11-17 03:57:02,694] [pool-1-thread-12] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-11-17 03:57:11,439] [pool-1-thread-10] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-11-17 03:57:24,504] [pool-1-thread-4] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-11-17 03:57:28,932] [pool-1-thread-12] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-11-17 03:57:45,081] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-11-17 03:57:53,060] [pool-1-thread-12] Initializing /data/converted/nicolas/image.tif: [testng] [2024-11-17 03:58:07,472] [pool-1-thread-9] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-11-17 03:58:13,039] [pool-1-thread-12] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-11-17 03:58:16,652] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 04:35:26,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:35:26,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:35:26,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-17_04-35-26.log] [testng] 04:35:26,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41fc5625 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 88 minutes 0 seconds Finished: SUCCESS