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Started by upstream project "BIOFORMATS-test-repo" build number 259 originally caused by: Started by upstream project "Trigger" build number 283 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins13472327434837069185.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_40793_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:21:59,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:59,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:59,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:59,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:59,562 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:59,562 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:59,562 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:59,563 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:59,563 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 00:21:59,564 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 00:21:59,564 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 459 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-18 00:21:59,573] [main] java.version = 1.8.0_342 [testng] 00:21:59,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:59,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:59,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-18_00-21-59.log] [testng] 00:21:59,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-18 00:21:59,681] [main] testng.directory = /data [testng] [2024-11-18 00:21:59,682] [main] testng.configDirectory = /config [testng] [2024-11-18 00:21:59,697] [main] testng.multiplier = 1.0 [testng] [2024-11-18 00:21:59,697] [main] testng.in-memory = false [testng] [2024-11-18 00:21:59,697] [main] testng.allow-missing = false [testng] [2024-11-18 00:21:59,697] [main] user.language = fr [testng] [2024-11-18 00:21:59,698] [main] user.country = FR [testng] [2024-11-18 00:21:59,698] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-18 00:22:00,604] [main] ---------------------------------------- [testng] [2024-11-18 00:22:00,604] [main] Total files: 36 [testng] [2024-11-18 00:22:00,604] [main] Scan time: 0.906 s (25 ms/file) [testng] [2024-11-18 00:22:00,604] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-18 00:22:02,172] [pool-1-thread-1] Initializing /data/generated/mri-stack12.pcx: [testng] 00:22:02,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:02,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-18_00-22-02.log] [testng] 00:22:02,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e4be40d - End of configuration. [testng] [2024-11-18 00:22:02,217] [pool-1-thread-12] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] 00:22:02,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:02,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-18_00-22-02.log] [testng] 00:22:02,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49e0eebc - End of configuration. [testng] [2024-11-18 00:22:02,230] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx: [testng] 00:22:02,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:02,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-18_00-22-02.log] [testng] 00:22:02,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@609a802b - End of configuration. [testng] [2024-11-18 00:22:02,243] [pool-1-thread-10] Initializing /data/generated/mri-stack4.pcx: [testng] 00:22:02,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:02,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-18_00-22-02.log] [testng] 00:22:02,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d0a485d - End of configuration. [testng] [2024-11-18 00:22:02,255] [pool-1-thread-9] Initializing /data/generated/mri-stack6.pcx: [testng] 00:22:02,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:02,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-18_00-22-02.log] [testng] 00:22:02,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd95b50 - End of configuration. [testng] [2024-11-18 00:22:02,267] [pool-1-thread-8] Initializing /data/generated/mri-stack10.pcx: [testng] 00:22:02,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:02,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-18_00-22-02.log] [testng] 00:22:02,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34a453a4 - End of configuration. [testng] [2024-11-18 00:22:02,278] [pool-1-thread-7] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 00:22:02,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:22:02,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-18_00-22-02.log] [testng] 00:22:02,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@877dac4 - End of configuration. [testng] [2024-11-18 00:22:02,292] [pool-1-thread-6] Initializing /data/generated/mri-stack3.pcx: [testng] 00:22:02,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:22:02,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-18_00-22-02.log] [testng] 00:22:02,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d58301 - End of configuration. [testng] [2024-11-18 00:22:02,303] [pool-1-thread-5] Initializing /data/generated/mri-stack14.pcx: [testng] 00:22:02,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:22:02,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-18_00-22-02.log] [testng] 00:22:02,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56f78f24 - End of configuration. [testng] [2024-11-18 00:22:02,316] [pool-1-thread-4] Initializing /data/generated/mri-stack19.pcx: [testng] 00:22:02,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:22:02,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-18_00-22-02.log] [testng] 00:22:02,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4322e9ef - End of configuration. [testng] [2024-11-18 00:22:02,325] [pool-1-thread-3] Initializing /data/generated/mri-stack17.pcx: [testng] 00:22:02,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:22:02,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-18_00-22-02.log] [testng] 00:22:02,327 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fab7a6a - End of configuration. [testng] [2024-11-18 00:22:02,336] [pool-1-thread-2] Initializing /data/generated/mri-stack7.pcx: [testng] 00:22:02,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:22:02,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-18_00-22-02.log] [testng] 00:22:02,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a30d2fe - End of configuration. [testng] [2024-11-18 00:22:06,487] [pool-1-thread-9] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-11-18 00:22:06,501] [pool-1-thread-5] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-11-18 00:22:06,512] [pool-1-thread-1] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-11-18 00:22:06,524] [pool-1-thread-4] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-11-18 00:22:06,538] [pool-1-thread-2] Initializing /data/generated/mri-stack15.pcx: [testng] [2024-11-18 00:22:06,545] [pool-1-thread-3] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-11-18 00:22:06,556] [pool-1-thread-10] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-11-18 00:22:06,563] [pool-1-thread-6] Initializing /data/generated/mri-stack23.pcx: [testng] [2024-11-18 00:22:06,570] [pool-1-thread-11] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-11-18 00:22:06,577] [pool-1-thread-8] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-11-18 00:22:06,593] [pool-1-thread-7] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-11-18 00:22:06,605] [pool-1-thread-12] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-11-18 00:22:07,478] [pool-1-thread-12] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-11-18 00:22:07,489] [pool-1-thread-2] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-11-18 00:22:07,519] [pool-1-thread-6] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-11-18 00:22:07,563] [pool-1-thread-5] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-11-18 00:22:07,590] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] [2024-11-18 00:22:07,614] [pool-1-thread-11] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-11-18 00:22:07,633] [pool-1-thread-7] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-11-18 00:22:07,657] [pool-1-thread-1] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-11-18 00:22:07,678] [pool-1-thread-10] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-11-18 00:22:07,891] [pool-1-thread-4] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-11-18 00:22:08,020] [pool-1-thread-12] Initializing /data/generated/mri-stack1.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS