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Started by upstream project "BIOFORMATS-test-repo" build number 31 originally caused by: Started by upstream project "Trigger" build number 35 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1167925340793154031.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4083_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:10:52,762 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:10:52,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 07:10:52,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:10:52,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:10:52,768 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:10:52,768 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:10:52,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:10:52,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:10:52,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:10:52,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:10:52,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:10:52,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:10:53,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:10:53,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:10:53,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:10:53,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:10:53,095 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:10:53,095 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:10:53,095 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:10:53,095 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:10:53,096 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 07:10:53,097 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 07:10:53,097 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 328 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-12 07:10:53,108] [main] java.version = 1.8.0_342 [testng] 07:10:53,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:10:53,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:10:53,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_07-10-53.log] [testng] 07:10:53,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-12 07:10:53,166] [main] testng.directory = /data [testng] [2024-04-12 07:10:53,166] [main] testng.configDirectory = /config [testng] [2024-04-12 07:10:53,180] [main] testng.multiplier = 1.0 [testng] [2024-04-12 07:10:53,180] [main] testng.in-memory = false [testng] [2024-04-12 07:10:53,180] [main] testng.allow-missing = false [testng] [2024-04-12 07:10:53,180] [main] user.language = en [testng] [2024-04-12 07:10:53,181] [main] user.country = ${user.country} [testng] [2024-04-12 07:10:53,181] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-12 07:11:12,777] [main] ---------------------------------------- [testng] [2024-04-12 07:11:12,777] [main] Total files: 283 [testng] [2024-04-12 07:11:12,777] [main] Scan time: 19.596 s (69 ms/file) [testng] [2024-04-12 07:11:12,777] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-12 07:20:18,181] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 07:20:18,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:20:18,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:18,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_07-20-18.log] [testng] 07:20:18,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@872e81b - End of configuration. [testng] [2024-04-12 07:20:18,250] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 07:20:18,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:20:18,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:18,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_07-20-18.log] [testng] 07:20:18,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11d461aa - End of configuration. [testng] [2024-04-12 07:20:18,342] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif: [testng] 07:20:18,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:20:18,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:18,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_07-20-18.log] [testng] 07:20:18,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cd43c3f - End of configuration. [testng] [2024-04-12 07:20:18,519] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] 07:20:18,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:20:18,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:18,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_07-20-18.log] [testng] 07:20:18,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6924d50b - End of configuration. [testng] [2024-04-12 07:20:19,310] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] 07:20:19,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:20:19,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:19,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_07-20-19.log] [testng] 07:20:19,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cca6b6d - End of configuration. [testng] [2024-04-12 07:20:19,371] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] 07:20:19,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:20:19,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:19,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_07-20-19.log] [testng] 07:20:19,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f961cf0 - End of configuration. [testng] [2024-04-12 07:20:19,469] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] 07:20:19,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:20:19,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:19,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_07-20-19.log] [testng] 07:20:19,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69842784 - End of configuration. [testng] [2024-04-12 07:20:19,553] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] 07:20:19,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:20:19,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:19,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_07-20-19.log] [testng] 07:20:19,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d28f394 - End of configuration. [testng] [2024-04-12 07:20:19,648] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] 07:20:19,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:20:19,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:19,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_07-20-19.log] [testng] 07:20:19,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d6cdc - End of configuration. [testng] [2024-04-12 07:20:20,081] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] 07:20:20,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:20:20,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:20,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_07-20-20.log] [testng] 07:20:20,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52842a73 - End of configuration. [testng] [2024-04-12 07:20:20,223] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 07:20:20,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:20:20,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:20,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_07-20-20.log] [testng] 07:20:20,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3671c8f2 - End of configuration. [testng] [2024-04-12 07:20:20,281] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir: [testng] 07:20:20,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:20:20,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:20:20,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_07-20-20.log] [testng] 07:20:20,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d59b647 - End of configuration. [testng] [2024-04-12 07:20:24,679] [pool-1-thread-12] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-04-12 07:20:25,167] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-04-12 07:20:25,404] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-04-12 07:20:25,640] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-04-12 07:20:25,777] [pool-1-thread-11] Initializing /data/olympus/XYZt.vsi: [testng] [2024-04-12 07:20:25,837] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-04-12 07:20:26,191] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-04-12 07:20:26,273] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-04-12 07:20:26,881] [pool-1-thread-2] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-04-12 07:20:27,719] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-04-12 07:20:28,721] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-04-12 07:20:28,866] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-04-12 07:20:34,685] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-04-12 07:20:34,975] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-04-12 07:20:35,195] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-04-12 07:20:35,289] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-04-12 07:20:35,924] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-04-12 07:20:36,156] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-04-12 07:20:36,580] [pool-1-thread-1] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-04-12 07:20:36,943] [pool-1-thread-8] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-04-12 07:20:37,245] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-04-12 07:20:37,330] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-04-12 07:20:37,419] [pool-1-thread-6] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-04-12 07:20:37,778] [pool-1-thread-3] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-04-12 07:20:38,473] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-04-12 07:20:39,219] [pool-1-thread-8] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-04-12 07:21:06,894] [pool-1-thread-9] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-04-12 07:21:06,973] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-04-12 07:21:07,793] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-04-12 07:21:07,966] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-04-12 07:21:08,246] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-04-12 07:21:08,431] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-04-12 07:21:08,767] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-04-12 07:21:09,033] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-04-12 07:21:09,277] [pool-1-thread-3] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-04-12 07:21:09,634] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-04-12 07:21:10,220] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-04-12 07:21:10,852] [pool-1-thread-2] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-04-12 07:21:11,521] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-04-12 07:21:11,819] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-04-12 07:21:11,965] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-04-12 07:21:13,096] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-04-12 07:21:13,380] [pool-1-thread-9] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-04-12 07:21:14,956] [pool-1-thread-12] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-04-12 07:21:15,518] [pool-1-thread-7] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-04-12 07:21:15,642] [pool-1-thread-6] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-04-12 07:21:15,729] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-04-12 07:21:16,117] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-04-12 07:21:16,246] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-04-12 07:21:17,133] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-04-12 07:21:17,367] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-04-12 07:21:17,454] [pool-1-thread-10] Initializing /data/qa-17919/f10187.oir: [testng] [2024-04-12 07:21:48,918] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-04-12 07:21:49,198] [pool-1-thread-6] Initializing /data/qa-17270/image1.oir: [testng] [2024-04-12 07:21:49,368] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-04-12 07:21:49,518] [pool-1-thread-4] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-04-12 07:21:49,845] [pool-1-thread-1] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-04-12 07:21:50,416] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-04-12 07:21:50,487] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-04-12 07:21:50,566] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-04-12 07:21:52,829] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-04-12 07:21:52,988] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-04-12 07:21:53,398] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-04-12 07:21:53,613] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-04-12 07:21:54,245] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-04-12 07:21:54,480] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-04-12 07:21:54,635] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-04-12 07:21:56,112] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-04-12 07:21:57,007] [pool-1-thread-5] Initializing 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/data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-04-12 07:22:23,153] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-04-12 07:22:25,963] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-04-12 07:22:27,467] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-04-12 07:22:29,054] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-04-12 07:22:30,609] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-04-12 07:22:31,130] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-04-12 07:22:32,592] [pool-1-thread-4] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-04-12 07:22:49,420] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-04-12 07:22:52,635] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-04-12 07:22:52,836] [pool-1-thread-12] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-04-12 07:22:53,042] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-04-12 07:22:54,250] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-04-12 07:22:54,963] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-04-12 07:22:56,136] [pool-1-thread-3] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-04-12 07:22:56,315] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-04-12 07:22:57,286] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-04-12 07:22:57,334] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-04-12 07:22:57,464] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-04-12 07:23:01,952] [pool-1-thread-3] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-04-12 07:23:02,028] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-04-12 07:23:03,407] [pool-1-thread-7] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-04-12 07:23:07,032] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-04-12 07:23:07,616] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-04-12 07:23:07,686] [pool-1-thread-6] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-04-12 07:23:11,024] [pool-1-thread-9] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-04-12 07:23:11,744] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-04-12 07:23:12,899] [pool-1-thread-9] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-04-12 07:23:13,803] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-04-12 07:23:13,864] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-04-12 07:23:14,287] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-04-12 07:23:15,104] [pool-1-thread-3] Initializing /data/qa-17917/f10010.oir: [testng] [2024-04-12 07:24:01,465] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-04-12 07:24:01,905] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-04-12 07:24:04,766] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-04-12 07:24:14,052] [pool-1-thread-11] Initializing /data/qa-17335/1.oir: [testng] [2024-04-12 07:24:14,757] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-04-12 07:24:15,911] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-04-12 07:24:16,680] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-04-12 07:24:17,484] [pool-1-thread-11] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-04-12 07:24:18,599] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-04-12 07:24:19,838] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-04-12 07:24:21,299] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-04-12 07:24:22,634] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-04-12 07:24:23,864] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-04-12 07:24:36,364] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-04-12 07:24:49,012] [pool-1-thread-2] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-04-12 07:24:56,745] [pool-1-thread-9] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-04-12 07:24:58,040] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-04-12 07:24:59,549] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-04-12 07:25:00,512] [pool-1-thread-9] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-04-12 07:25:02,075] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-04-12 07:25:03,297] [pool-1-thread-6] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-04-12 07:25:06,656] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-04-12 07:25:08,511] [pool-1-thread-7] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-04-12 07:25:42,720] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-04-12 07:25:43,487] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-04-12 07:25:44,468] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-04-12 07:25:44,669] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-04-12 07:25:44,815] [pool-1-thread-6] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-04-12 07:25:45,659] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-04-12 07:25:46,615] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-04-12 07:25:47,085] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-04-12 07:25:47,877] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-04-12 07:25:49,185] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-04-12 07:25:49,431] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-04-12 07:25:50,387] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-04-12 07:25:53,449] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-04-12 07:25:53,835] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-04-12 07:25:55,090] [pool-1-thread-5] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-04-12 07:25:55,610] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-04-12 07:25:56,298] [pool-1-thread-5] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-04-12 07:26:00,286] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-04-12 07:26:01,724] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-04-12 07:26:03,483] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-04-12 07:26:03,929] [pool-1-thread-2] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-04-12 07:28:35,366] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-04-12 07:28:53,450] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-04-12 07:28:54,397] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-04-12 07:28:54,477] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-04-12 07:28:56,102] [pool-1-thread-9] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-04-12 07:28:56,665] [pool-1-thread-12] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-04-12 07:28:57,953] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-04-12 07:28:58,375] [pool-1-thread-12] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-04-12 07:28:59,087] [pool-1-thread-9] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-04-12 07:29:00,118] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-04-12 07:29:23,309] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-04-12 07:29:25,546] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-04-12 07:29:27,560] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-04-12 07:29:28,936] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-04-12 07:29:30,988] [pool-1-thread-5] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-04-12 07:29:40,003] [pool-1-thread-4] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-04-12 07:29:41,380] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-04-12 07:29:42,657] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-04-12 07:29:42,943] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-04-12 07:29:45,148] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-04-12 07:29:46,467] [pool-1-thread-5] Initializing /data/qa-16871/Clipboard.tif: [testng] 08:25:03,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:25:03,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:25:03,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_08-25-03.log] [testng] 08:25:03,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b06e50 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 74 minutes 15 seconds Finished: SUCCESS