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Started by upstream project "BIOFORMATS-test-repo" build number 259 originally caused by: Started by upstream project "Trigger" build number 283 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11332224519263505540.sh + '[' targa = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_40830_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:38:11,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:38:11,784 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:38:11,784 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:38:11,785 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:38:11,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:38:11,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:38:11,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:38:11,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:38:11,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:38:11,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:38:11,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:38:11,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:38:12,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:38:12,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:38:12,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:38:12,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:38:12,068 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:38:12,068 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:38:12,068 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:38:12,069 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:38:12,069 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:38:12,070 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:38:12,070 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 284 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-18 00:38:12,081] [main] java.version = 1.8.0_342 [testng] 00:38:12,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:38:12,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:12,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-18_00-38-12.log] [testng] 00:38:12,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-18 00:38:12,137] [main] testng.directory = /data [testng] [2024-11-18 00:38:12,137] [main] testng.configDirectory = /config [testng] [2024-11-18 00:38:12,154] [main] testng.multiplier = 1.0 [testng] [2024-11-18 00:38:12,155] [main] testng.in-memory = false [testng] [2024-11-18 00:38:12,155] [main] testng.allow-missing = false [testng] [2024-11-18 00:38:12,156] [main] user.language = fr [testng] [2024-11-18 00:38:12,156] [main] user.country = FR [testng] [2024-11-18 00:38:12,156] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-18 00:38:12,705] [main] ---------------------------------------- [testng] [2024-11-18 00:38:12,705] [main] Total files: 21 [testng] [2024-11-18 00:38:12,705] [main] Scan time: 0.549 s (26 ms/file) [testng] [2024-11-18 00:38:12,705] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-18 00:38:18,700] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA: [testng] 00:38:18,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:38:18,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:18,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-18_00-38-18.log] [testng] 00:38:18,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e85899 - End of configuration. [testng] [2024-11-18 00:38:18,880] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA: [testng] 00:38:18,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:38:18,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:18,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-18_00-38-18.log] [testng] 00:38:18,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ea044ae - End of configuration. [testng] [2024-11-18 00:38:19,081] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 00:38:19,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:38:19,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:19,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-18_00-38-19.log] [testng] 00:38:19,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@128f67d0 - End of configuration. [testng] [2024-11-18 00:38:19,251] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 00:38:19,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:38:19,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:19,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-18_00-38-19.log] [testng] 00:38:19,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24c1092 - End of configuration. [testng] [2024-11-18 00:38:19,425] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:38:19,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:38:19,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:19,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-18_00-38-19.log] [testng] 00:38:19,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d4acaa4 - End of configuration. [testng] [2024-11-18 00:38:19,582] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:38:19,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:38:19,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:19,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-18_00-38-19.log] [testng] 00:38:19,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@390d4af7 - End of configuration. [testng] [2024-11-18 00:38:19,732] [pool-1-thread-7] Initializing /data/samples/CTC16.TGA: [testng] 00:38:19,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:38:19,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:19,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-18_00-38-19.log] [testng] 00:38:19,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26f9cda2 - End of configuration. [testng] [2024-11-18 00:38:19,910] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] 00:38:19,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:38:19,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:19,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-18_00-38-19.log] [testng] 00:38:19,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e1ba1ff - End of configuration. [testng] [2024-11-18 00:38:20,074] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: [testng] 00:38:20,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:38:20,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:20,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-18_00-38-20.log] [testng] 00:38:20,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b752e4 - End of configuration. [testng] [2024-11-18 00:38:20,233] [pool-1-thread-4] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:38:20,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:38:20,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:20,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-18_00-38-20.log] [testng] 00:38:20,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@454507c4 - End of configuration. [testng] [2024-11-18 00:38:20,400] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] 00:38:20,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:38:20,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:20,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-18_00-38-20.log] [testng] 00:38:20,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67137a57 - End of configuration. [testng] [2024-11-18 00:38:20,574] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] 00:38:20,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:38:20,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:20,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-18_00-38-20.log] [testng] 00:38:20,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46fcde9d - End of configuration. [testng] [2024-11-18 00:38:23,925] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] [2024-11-18 00:38:24,208] [pool-1-thread-3] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-11-18 00:38:24,487] [pool-1-thread-5] Initializing /data/samples/CBW8.TGA: [testng] [2024-11-18 00:38:24,753] [pool-1-thread-7] Initializing /data/samples/XING_B32.TGA: [testng] [2024-11-18 00:38:24,986] [pool-1-thread-1] Initializing /data/samples/UTC24.TGA: [testng] [2024-11-18 00:38:25,138] [pool-1-thread-6] Initializing /data/samples/UTC32.TGA: [testng] [2024-11-18 00:38:25,287] [pool-1-thread-10] Initializing /data/samples/UBW8.TGA: [testng] [2024-11-18 00:38:25,537] [pool-1-thread-12] Initializing /data/samples/XING_T32.TGA: [testng] [2024-11-18 00:38:25,852] [pool-1-thread-2] Initializing /data/samples/UTC16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS