Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 259
originally caused by:
 Started by upstream project "Trigger" build number 283
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins8579965753183792971.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_40864_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 01:30:31,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:30:31,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 01:30:31,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:30:31,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:30:31,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:30:31,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:30:31,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:30:31,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:30:31,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:30:31,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:30:31,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:30:31,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:30:32,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:30:32,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:30:32,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:30:32,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:30:32,227 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:30:32,227 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:30:32,227 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:30:32,227 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:30:32,228 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 01:30:32,228 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 01:30:32,228 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 269 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-18 01:30:32,238] [main] java.version = 1.8.0_342
   [testng] 01:30:32,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:30:32,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:32,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-18_01-30-32.log]
   [testng] 01:30:32,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-11-18 01:30:32,291] [main] testng.directory = /data
   [testng] [2024-11-18 01:30:32,291] [main] testng.configDirectory = /config
   [testng] [2024-11-18 01:30:32,304] [main] testng.multiplier = 1.0
   [testng] [2024-11-18 01:30:32,304] [main] testng.in-memory = false
   [testng] [2024-11-18 01:30:32,304] [main] testng.allow-missing = false
   [testng] [2024-11-18 01:30:32,304] [main] user.language = fr
   [testng] [2024-11-18 01:30:32,304] [main] user.country = FR
   [testng] [2024-11-18 01:30:32,304] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-11-18 01:30:32,923] [main] ----------------------------------------
   [testng] [2024-11-18 01:30:32,924] [main] Total files: 15
   [testng] [2024-11-18 01:30:32,924] [main] Scan time: 0.618 s (41 ms/file)
   [testng] [2024-11-18 01:30:32,924] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-18 01:30:44,216] [pool-1-thread-1] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc: 
   [testng] 01:30:44,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:30:44,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:44,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-18_01-30-44.log]
   [testng] 01:30:44,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46e9363e - End of configuration.
   [testng] [2024-11-18 01:30:47,117] [pool-1-thread-12] Initializing /data/samples/N3/average_305_mask_1mm.mnc: 
   [testng] 01:30:47,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:30:47,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:47,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-18_01-30-47.log]
   [testng] 01:30:47,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f050689 - End of configuration.
   [testng] [2024-11-18 01:30:47,456] [pool-1-thread-11] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: 
   [testng] 01:30:47,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:30:47,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:47,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-18_01-30-47.log]
   [testng] 01:30:47,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26ddf4b8 - End of configuration.
   [testng] [2024-11-18 01:30:47,762] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc: 
   [testng] 01:30:47,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:30:47,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:47,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-18_01-30-47.log]
   [testng] 01:30:47,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ac4f378 - End of configuration.
   [testng] [2024-11-18 01:30:48,198] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc: 
   [testng] 01:30:48,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:30:48,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:48,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-18_01-30-48.log]
   [testng] 01:30:48,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ed0d0ee - End of configuration.
   [testng] [2024-11-18 01:30:48,480] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: 
   [testng] 01:30:48,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:30:48,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:48,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-18_01-30-48.log]
   [testng] 01:30:48,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76284d7a - End of configuration.
   [testng] [2024-11-18 01:30:48,828] [pool-1-thread-7] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc: 
   [testng] 01:30:48,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:30:48,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:48,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-18_01-30-48.log]
   [testng] 01:30:48,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d651253 - End of configuration.
   [testng] [2024-11-18 01:30:49,179] [pool-1-thread-6] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: 
   [testng] 01:30:49,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:30:49,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:49,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-18_01-30-49.log]
   [testng] 01:30:49,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672a1ece - End of configuration.
   [testng] [2024-11-18 01:30:49,447] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc: 
   [testng] 01:30:49,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:30:49,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:49,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-18_01-30-49.log]
   [testng] 01:30:49,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@583278dd - End of configuration.
   [testng] [2024-11-18 01:30:49,714] [pool-1-thread-4] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: 
   [testng] 01:30:49,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:30:49,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:49,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-18_01-30-49.log]
   [testng] 01:30:49,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@518da28f - End of configuration.
   [testng] [2024-11-18 01:30:50,016] [pool-1-thread-3] Initializing /data/qa-17215/IBSR01.mnc: 
   [testng] 01:30:50,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:30:50,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:50,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-18_01-30-50.log]
   [testng] 01:30:50,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@554593db - End of configuration.
   [testng] [2024-11-18 01:30:50,383] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_atlas_cerebellum_avg_53_mask_1mm.mnc: 
   [testng] 01:30:50,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:30:50,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:30:50,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-18_01-30-50.log]
   [testng] 01:30:50,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@703fde5c - End of configuration.

BUILD SUCCESSFUL
Total time: 44 seconds
Finished: SUCCESS