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Started by upstream project "BIOFORMATS-test-repo" build number 259 originally caused by: Started by upstream project "Trigger" build number 283 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins250539011768577499.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_40926_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:16:06,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:16:06,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:16:06,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:16:06,435 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:16:06,435 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:16:06,435 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:16:06,435 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:16:06,435 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:16:06,436 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:16:06,436 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:16:06,436 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:16:06,436 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:16:06,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:16:06,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:16:06,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:16:06,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:16:06,702 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:16:06,702 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:16:06,702 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:16:06,703 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:16:06,703 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:16:06,704 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:16:06,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 268 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-18 03:16:06,714] [main] java.version = 1.8.0_342 [testng] 03:16:06,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:16:06,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:06,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-18_03-16-06.log] [testng] 03:16:06,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-18 03:16:06,767] [main] testng.directory = /data [testng] [2024-11-18 03:16:06,767] [main] testng.configDirectory = /config [testng] [2024-11-18 03:16:06,779] [main] testng.multiplier = 1.0 [testng] [2024-11-18 03:16:06,780] [main] testng.in-memory = false [testng] [2024-11-18 03:16:06,780] [main] testng.allow-missing = false [testng] [2024-11-18 03:16:06,780] [main] user.language = fr [testng] [2024-11-18 03:16:06,780] [main] user.country = FR [testng] [2024-11-18 03:16:06,780] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-18 03:16:08,879] [main] ---------------------------------------- [testng] [2024-11-18 03:16:08,879] [main] Total files: 32 [testng] [2024-11-18 03:16:08,879] [main] Scan time: 2.099 s (65 ms/file) [testng] [2024-11-18 03:16:08,879] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-18 03:16:22,182] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc: [testng] 03:16:22,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:16:22,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:22,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-18_03-16-22.log] [testng] 03:16:22,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ad8ce96 - End of configuration. [testng] [2024-11-18 03:16:22,429] [pool-1-thread-12] Initializing /data/keith/test.1sc: [testng] 03:16:22,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:16:22,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:22,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-18_03-16-22.log] [testng] 03:16:22,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70a1561b - End of configuration. [testng] [2024-11-18 03:16:22,681] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] 03:16:22,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:16:22,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:22,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-18_03-16-22.log] [testng] 03:16:22,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a6b6422 - End of configuration. [testng] [2024-11-18 03:16:23,543] [pool-1-thread-10] Initializing /data/geert/bad example1.1sc.jpg: [testng] 03:16:23,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:16:23,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:23,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-18_03-16-23.log] [testng] 03:16:23,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3538b535 - End of configuration. [testng] [2024-11-18 03:16:23,654] [pool-1-thread-9] Initializing /data/samples/imagesEight.1sc: [testng] 03:16:23,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:16:23,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:23,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-18_03-16-23.log] [testng] 03:16:23,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e165d77 - End of configuration. [testng] [2024-11-18 03:16:23,937] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] 03:16:23,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:16:23,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:23,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-18_03-16-23.log] [testng] 03:16:23,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c819e9d - End of configuration. [testng] [2024-11-18 03:16:24,192] [pool-1-thread-7] Initializing /data/keith/PF020328saur v3.1sc: [testng] 03:16:24,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:16:24,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:24,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-18_03-16-24.log] [testng] 03:16:24,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79d106c0 - End of configuration. [testng] [2024-11-18 03:16:24,421] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] 03:16:24,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:16:24,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:24,422 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-18_03-16-24.log] [testng] 03:16:24,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fbecab1 - End of configuration. [testng] [2024-11-18 03:16:24,655] [pool-1-thread-5] Initializing /data/geert/bad example1.jpg: [testng] 03:16:24,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:16:24,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:24,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-18_03-16-24.log] [testng] 03:16:24,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d5f3883 - End of configuration. [testng] [2024-11-18 03:16:24,769] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] 03:16:24,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:16:24,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:24,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-18_03-16-24.log] [testng] 03:16:24,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49eb99bc - End of configuration. [testng] [2024-11-18 03:16:25,033] [pool-1-thread-3] Initializing /data/keith/test2.1sc: [testng] 03:16:25,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:16:25,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:25,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-18_03-16-25.log] [testng] 03:16:25,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b439539 - End of configuration. [testng] [2024-11-18 03:16:25,265] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] 03:16:25,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:16:25,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:25,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-18_03-16-25.log] [testng] 03:16:25,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7916712c - End of configuration. [testng] [2024-11-18 03:16:29,650] [pool-1-thread-9] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-11-18 03:16:29,941] [pool-1-thread-7] Initializing /data/geert/bad example1.1sc: [testng] [2024-11-18 03:16:30,215] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-11-18 03:16:31,136] [pool-1-thread-12] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-11-18 03:16:31,503] [pool-1-thread-1] Initializing /data/qa-29469/good.1sc: [testng] [2024-11-18 03:16:31,847] [pool-1-thread-10] Initializing /data/keith/pg020410saur3.1sc: [testng] [2024-11-18 03:16:32,111] [pool-1-thread-5] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-11-18 03:16:32,391] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2024-11-18 03:16:33,295] [pool-1-thread-4] Initializing /data/geert/good example1.1sc: [testng] [2024-11-18 03:16:33,588] [pool-1-thread-6] Initializing /data/adrian/test_img.1sc: [testng] [2024-11-18 03:16:36,834] [pool-1-thread-10] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2024-11-18 03:16:37,184] [pool-1-thread-5] Initializing /data/qa-29459/bad.jpg: [testng] [2024-11-18 03:16:37,393] [pool-1-thread-9] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-11-18 03:16:38,385] [pool-1-thread-2] Initializing /data/david/Opened in imageJ.tiff: [testng] [2024-11-18 03:16:39,386] [pool-1-thread-11] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-11-18 03:16:39,734] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-11-18 03:16:40,060] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-11-18 03:16:41,010] [pool-1-thread-6] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-11-18 03:16:41,139] [pool-1-thread-7] Initializing /data/qa-29459/bad.1sc: [testng] [2024-11-18 03:16:41,557] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 45 seconds Finished: SUCCESS