![[Jenkins]](/jenkins/static/8dc2a4ee/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 259 originally caused by: Started by upstream project "Trigger" build number 283 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins6037443531489505187.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_40950_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:14:31,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:14:31,396 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:14:31,396 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:14:31,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:14:31,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:14:31,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:14:31,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:14:31,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:14:31,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:14:31,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:14:31,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:14:31,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:14:31,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:14:31,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:14:31,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:14:31,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:14:31,656 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:14:31,657 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:14:31,657 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:14:31,657 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:14:31,657 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:14:31,658 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:14:31,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 260 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-18 04:14:31,668] [main] java.version = 1.8.0_342 [testng] 04:14:31,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:14:31,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:31,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-18_04-14-31.log] [testng] 04:14:31,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-18 04:14:31,720] [main] testng.directory = /data [testng] [2024-11-18 04:14:31,720] [main] testng.configDirectory = /config [testng] [2024-11-18 04:14:31,732] [main] testng.multiplier = 1.0 [testng] [2024-11-18 04:14:31,732] [main] testng.in-memory = false [testng] [2024-11-18 04:14:31,732] [main] testng.allow-missing = false [testng] [2024-11-18 04:14:31,732] [main] user.language = fr [testng] [2024-11-18 04:14:31,732] [main] user.country = FR [testng] [2024-11-18 04:14:31,732] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-18 04:14:35,777] [main] ---------------------------------------- [testng] [2024-11-18 04:14:35,778] [main] Total files: 22 [testng] [2024-11-18 04:14:35,778] [main] Scan time: 4.045 s (183 ms/file) [testng] [2024-11-18 04:14:35,778] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-18 04:14:49,828] [pool-1-thread-1] Initializing /data/converted/clown8c.ipw: [testng] 04:14:49,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:14:49,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:49,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-18_04-14-49.log] [testng] 04:14:49,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6150b1c5 - End of configuration. [testng] [2024-11-18 04:14:50,087] [pool-1-thread-12] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 04:14:50,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:14:50,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:50,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-18_04-14-50.log] [testng] 04:14:50,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f423351 - End of configuration. [testng] [2024-11-18 04:14:50,401] [pool-1-thread-11] Initializing /data/converted/mitosis-test.seq: [testng] 04:14:50,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:14:50,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:50,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-18_04-14-50.log] [testng] 04:14:50,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b2fe50 - End of configuration. [testng] [2024-11-18 04:14:50,699] [pool-1-thread-10] Initializing /data/converted/clown.ipw: [testng] 04:14:50,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:14:50,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:50,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-18_04-14-50.log] [testng] 04:14:50,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f114c58 - End of configuration. [testng] [2024-11-18 04:14:50,968] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 04:14:50,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:14:50,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:50,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-18_04-14-50.log] [testng] 04:14:50,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52ddc950 - End of configuration. [testng] [2024-11-18 04:14:51,262] [pool-1-thread-8] Initializing /data/samples/HEART.SEQ: [testng] 04:14:51,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:14:51,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:51,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-18_04-14-51.log] [testng] 04:14:51,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@516adaa1 - End of configuration. [testng] [2024-11-18 04:14:51,546] [pool-1-thread-7] Initializing /data/converted/clown8c.tif: [testng] 04:14:51,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:14:51,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:51,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-18_04-14-51.log] [testng] 04:14:51,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d9b10d8 - End of configuration. [testng] [2024-11-18 04:14:52,207] [pool-1-thread-6] Initializing /data/alex/AFAset0003.ips: [testng] 04:14:52,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:14:52,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:52,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-18_04-14-52.log] [testng] 04:14:52,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38df8878 - End of configuration. [testng] [2024-11-18 04:14:52,535] [pool-1-thread-5] Initializing /data/samples/TISSUE.TIF: [testng] 04:14:52,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:14:52,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:52,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-18_04-14-52.log] [testng] 04:14:52,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@464722fc - End of configuration. [testng] [2024-11-18 04:14:53,257] [pool-1-thread-4] Initializing /data/converted/clown.tif: [testng] 04:14:53,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:14:53,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:53,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-18_04-14-53.log] [testng] 04:14:53,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4edc71a1 - End of configuration. [testng] [2024-11-18 04:14:53,600] [pool-1-thread-3] Initializing /data/xiuwen/head2.seq: [testng] 04:14:53,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:14:53,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:53,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-18_04-14-53.log] [testng] 04:14:53,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47561006 - End of configuration. [testng] [2024-11-18 04:14:53,956] [pool-1-thread-2] Initializing /data/converted/dub01.pic: [testng] 04:14:53,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:14:53,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:53,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-18_04-14-53.log] [testng] 04:14:53,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b0242e3 - End of configuration. [testng] [2024-11-18 04:14:58,353] [pool-1-thread-1] Initializing /data/converted/dub01.ipw: [testng] [2024-11-18 04:14:58,634] [pool-1-thread-4] Initializing /data/converted/mitosis-test.tif: [testng] [2024-11-18 04:14:59,396] [pool-1-thread-10] Initializing /data/converted/clown.seq: [testng] [2024-11-18 04:14:59,681] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-11-18 04:15:00,420] [pool-1-thread-2] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-11-18 04:15:01,158] [pool-1-thread-8] Initializing /data/converted/dub01.seq: [testng] [2024-11-18 04:15:01,498] [pool-1-thread-12] Initializing /data/converted/clown8c.seq: [testng] [2024-11-18 04:15:01,853] [pool-1-thread-9] Initializing /data/samples/PROBE.TIF: [testng] [2024-11-18 04:15:03,479] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 11 seconds Finished: SUCCESS