Started by upstream project "BIOFORMATS-test-repo" build number 260 originally caused by: Started by upstream project "Trigger" build number 284 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16845599294701831255.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40967_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:21:52,675 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:52,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:21:52,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:52,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:52,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:52,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:52,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:52,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:52,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:52,680 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:52,680 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:52,680 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:52,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:52,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:52,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:52,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:52,880 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:52,880 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:52,880 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:52,880 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:52,880 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:21:52,881 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:21:52,881 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-19 00:21:52,890] [main] java.version = 11.0.16 [testng] 00:21:52,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:52,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:52,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-19_00-21-52.log] [testng] 00:21:52,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-19 00:21:52,939] [main] testng.directory = /data [testng] [2024-11-19 00:21:52,939] [main] testng.configDirectory = /config [testng] [2024-11-19 00:21:52,949] [main] testng.multiplier = 1.0 [testng] [2024-11-19 00:21:52,950] [main] testng.in-memory = false [testng] [2024-11-19 00:21:52,950] [main] testng.allow-missing = false [testng] [2024-11-19 00:21:52,950] [main] user.language = en [testng] [2024-11-19 00:21:52,950] [main] user.country = ${user.country} [testng] [2024-11-19 00:21:52,950] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-19 00:22:14,282] [main] ---------------------------------------- [testng] [2024-11-19 00:22:14,283] [main] Total files: 315 [testng] [2024-11-19 00:22:14,283] [main] Scan time: 21.332 s (67 ms/file) [testng] [2024-11-19 00:22:14,283] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-19 00:32:42,171] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] 00:32:42,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:32:42,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:42,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-19_00-32-42.log] [testng] 00:32:42,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc657c3 - End of configuration. [testng] [2024-11-19 00:32:42,716] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] 00:32:42,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:32:42,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:42,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-19_00-32-42.log] [testng] 00:32:42,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d654f97 - End of configuration. [testng] [2024-11-19 00:32:42,943] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] 00:32:42,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:32:42,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:42,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-19_00-32-42.log] [testng] 00:32:42,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560dcf3c - End of configuration. [testng] [2024-11-19 00:32:43,089] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] 00:32:43,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:32:43,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:43,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-19_00-32-43.log] [testng] 00:32:43,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7192c39f - End of configuration. [testng] [2024-11-19 00:32:43,322] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] 00:32:43,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:32:43,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:43,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-19_00-32-43.log] [testng] 00:32:43,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6daab0f1 - End of configuration. [testng] [2024-11-19 00:32:43,442] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif: [testng] 00:32:43,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:32:43,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:43,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-19_00-32-43.log] [testng] 00:32:43,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56c2de22 - End of configuration. [testng] [2024-11-19 00:32:43,660] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] 00:32:43,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:32:43,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:43,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-19_00-32-43.log] [testng] 00:32:43,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a963949 - End of configuration. [testng] [2024-11-19 00:32:43,969] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] 00:32:43,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:32:43,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:43,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-19_00-32-43.log] [testng] 00:32:43,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d667206 - End of configuration. [testng] [2024-11-19 00:32:44,259] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] 00:32:44,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:32:44,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:44,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-19_00-32-44.log] [testng] 00:32:44,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cc9785c - End of configuration. [testng] [2024-11-19 00:32:44,467] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] 00:32:44,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:32:44,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:44,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-19_00-32-44.log] [testng] 00:32:44,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43d7e66f - End of configuration. [testng] [2024-11-19 00:32:44,837] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] 00:32:44,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:32:44,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:44,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-19_00-32-44.log] [testng] 00:32:44,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@239bcff4 - End of configuration. [testng] [2024-11-19 00:32:45,138] [pool-1-thread-2] Initializing /data/qa-17270/image1.oir: [testng] 00:32:45,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:32:45,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:45,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-19_00-32-45.log] [testng] 00:32:45,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10d70aa5 - End of configuration. [testng] [2024-11-19 00:32:49,104] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-11-19 00:32:50,175] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-11-19 00:32:50,542] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-11-19 00:32:52,967] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-11-19 00:32:53,961] [pool-1-thread-8] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-11-19 00:32:54,467] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-11-19 00:32:54,943] [pool-1-thread-3] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-11-19 00:32:54,965] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-11-19 00:32:56,357] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-11-19 00:32:57,522] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-11-19 00:33:01,050] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-11-19 00:33:03,584] [pool-1-thread-12] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-11-19 00:33:04,082] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-11-19 00:33:04,999] [pool-1-thread-6] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-11-19 00:33:05,664] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-19 00:33:06,200] [pool-1-thread-3] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-11-19 00:33:07,352] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-11-19 00:33:08,548] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-11-19 00:33:11,903] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-11-19 00:33:12,789] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-11-19 00:33:13,301] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-11-19 00:33:13,844] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-11-19 00:33:14,540] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-11-19 00:33:17,653] [pool-1-thread-1] Initializing /data/olympus/XYZt.oir: [testng] [2024-11-19 00:33:19,927] [pool-1-thread-11] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-11-19 00:33:20,457] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-11-19 00:33:20,878] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-11-19 00:33:21,252] [pool-1-thread-7] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-11-19 00:33:24,805] [pool-1-thread-5] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-11-19 00:33:25,311] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-11-19 00:33:25,870] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-11-19 00:33:28,370] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-11-19 00:33:29,591] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-11-19 00:33:29,988] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-11-19 00:33:31,497] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-11-19 00:33:32,289] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-11-19 00:33:33,201] [pool-1-thread-7] Initializing /data/olympus/XYZt.vsi: [testng] [2024-11-19 00:33:35,037] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-11-19 00:33:35,424] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-11-19 00:33:36,022] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-11-19 00:33:36,398] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-11-19 00:33:37,609] [pool-1-thread-7] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-11-19 00:34:00,733] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-11-19 00:34:01,170] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-11-19 00:34:02,283] [pool-1-thread-4] Initializing /data/qa-17917/f10010.oir: [testng] [2024-11-19 00:34:32,217] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-11-19 00:34:33,762] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-11-19 00:34:34,224] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-11-19 00:34:34,675] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-11-19 00:34:34,992] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-11-19 00:34:36,645] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-11-19 00:34:38,501] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-11-19 00:34:39,699] [pool-1-thread-2] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-11-19 00:34:42,931] [pool-1-thread-5] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-11-19 00:34:43,575] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-19 00:34:44,284] [pool-1-thread-12] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-11-19 00:34:45,073] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-11-19 00:34:47,686] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-11-19 00:34:49,634] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-11-19 00:34:54,356] [pool-1-thread-5] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-11-19 00:34:56,260] [pool-1-thread-8] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-11-19 00:34:56,838] [pool-1-thread-11] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-11-19 00:35:01,631] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-11-19 00:35:08,303] [pool-1-thread-8] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-11-19 00:35:09,564] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-11-19 00:35:10,252] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-11-19 00:35:11,702] [pool-1-thread-12] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-11-19 00:35:12,290] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-11-19 00:35:15,934] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-11-19 00:35:19,248] [pool-1-thread-12] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-11-19 00:35:20,570] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-11-19 00:35:21,483] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-11-19 00:35:22,288] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-11-19 00:35:23,667] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-11-19 00:35:27,029] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-11-19 00:35:28,773] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-11-19 00:35:29,478] [pool-1-thread-5] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-11-19 00:35:30,656] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-11-19 00:35:32,045] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-11-19 00:35:32,492] [pool-1-thread-11] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-11-19 00:35:35,227] [pool-1-thread-6] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-11-19 00:35:38,040] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-19 00:35:38,594] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-11-19 00:35:39,529] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-11-19 00:35:40,856] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-11-19 00:35:47,307] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-11-19 00:35:48,094] [pool-1-thread-8] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-11-19 00:35:49,382] [pool-1-thread-5] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-11-19 00:35:56,282] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-11-19 00:35:58,658] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-11-19 00:36:00,516] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-11-19 00:36:02,120] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-11-19 00:36:04,445] [pool-1-thread-5] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-11-19 00:37:09,545] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-11-19 00:37:11,514] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-11-19 00:37:12,909] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-11-19 00:37:14,177] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-11-19 00:37:15,753] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-11-19 00:37:20,884] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-11-19 00:37:21,536] [pool-1-thread-8] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-11-19 00:37:21,966] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-11-19 00:37:22,466] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-11-19 00:37:23,515] [pool-1-thread-6] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-11-19 00:37:26,752] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-11-19 00:37:30,264] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-11-19 00:37:31,394] [pool-1-thread-8] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-11-19 00:37:31,998] [pool-1-thread-11] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-11-19 00:37:32,943] [pool-1-thread-6] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-11-19 00:37:35,500] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-11-19 00:37:37,416] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-11-19 00:37:40,044] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-11-19 00:37:40,316] [pool-1-thread-11] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-11-19 00:37:42,372] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-11-19 00:37:43,109] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-11-19 00:37:45,089] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-11-19 00:37:46,049] [pool-1-thread-11] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-11-19 00:37:46,559] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-11-19 00:37:49,123] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-11-19 00:37:49,713] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-11-19 00:37:50,819] [pool-1-thread-8] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-11-19 00:37:52,354] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-11-19 00:37:55,868] [pool-1-thread-6] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-11-19 00:37:58,007] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-11-19 00:37:58,990] [pool-1-thread-2] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-11-19 00:37:59,704] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-11-19 00:38:00,906] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-11-19 00:38:04,633] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-11-19 00:38:05,593] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-11-19 00:38:05,871] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-11-19 00:38:06,598] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-11-19 00:38:06,895] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-11-19 00:38:10,477] [pool-1-thread-2] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-11-19 00:38:10,918] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-11-19 00:38:11,387] [pool-1-thread-3] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-11-19 00:38:12,068] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-11-19 00:38:12,764] [pool-1-thread-9] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-11-19 00:38:15,862] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-11-19 00:38:17,012] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-11-19 00:38:19,888] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-11-19 00:38:20,762] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-11-19 00:38:22,222] [pool-1-thread-3] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-11-19 00:38:23,452] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-11-19 00:38:24,704] [pool-1-thread-2] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-11-19 00:38:31,953] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-11-19 00:38:33,005] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-11-19 00:38:33,499] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-11-19 00:38:34,255] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-11-19 00:38:38,520] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-11-19 00:38:42,663] [pool-1-thread-1] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-11-19 00:38:43,153] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-11-19 00:38:43,554] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-11-19 00:38:44,994] [pool-1-thread-3] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-11-19 00:38:45,399] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-11-19 00:38:50,382] [pool-1-thread-7] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-11-19 00:38:50,916] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-11-19 00:38:52,344] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-11-19 00:38:53,237] [pool-1-thread-9] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-11-19 00:39:01,920] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-11-19 00:39:05,691] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-11-19 00:39:08,567] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-11-19 00:39:10,611] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-11-19 00:39:11,427] [pool-1-thread-3] Initializing /data/qa-17270/stack1.oir: [testng] [2024-11-19 00:39:16,446] [pool-1-thread-4] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-11-19 00:39:17,148] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-11-19 00:39:17,844] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-11-19 00:39:21,272] [pool-1-thread-1] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-11-19 00:39:25,446] [pool-1-thread-11] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-11-19 00:39:32,865] [pool-1-thread-4] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-11-19 00:39:34,462] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-11-19 00:39:36,048] [pool-1-thread-6] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-11-19 00:39:39,192] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-11-19 00:39:41,199] [pool-1-thread-3] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-11-19 00:39:42,546] [pool-1-thread-8] Initializing /data/qa-17335/1.oir: [testng] [2024-11-19 00:39:43,906] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-11-19 00:39:47,874] [pool-1-thread-1] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-11-19 00:39:48,348] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-11-19 00:39:49,557] [pool-1-thread-8] Initializing /data/qa-17919/f10187.oir: [testng] [2024-11-19 00:40:08,403] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-11-19 00:40:10,689] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-11-19 00:40:11,343] [pool-1-thread-7] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 51 minutes 17 seconds Finished: SUCCESS