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Started by upstream project "BIOFORMATS-test-repo" build number 260 originally caused by: Started by upstream project "Trigger" build number 284 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins14567559787006807757.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_40998_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:43:44,543 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:43:44,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:43:44,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:44,545 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:44,546 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:43:44,546 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:43:44,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:43:44,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:44,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:44,548 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:43:44,548 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:43:44,548 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:43:44,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:43:44,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:43:44,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:43:44,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:43:44,749 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:43:44,749 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:43:44,749 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:43:44,750 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:43:44,750 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:43:44,750 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:43:44,751 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-19 00:43:44,759] [main] java.version = 11.0.16 [testng] 00:43:44,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:43:44,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:44,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-19_00-43-44.log] [testng] 00:43:44,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-19 00:43:44,808] [main] testng.directory = /data [testng] [2024-11-19 00:43:44,808] [main] testng.configDirectory = /config [testng] [2024-11-19 00:43:44,818] [main] testng.multiplier = 1.0 [testng] [2024-11-19 00:43:44,820] [main] testng.in-memory = false [testng] [2024-11-19 00:43:44,820] [main] testng.allow-missing = false [testng] [2024-11-19 00:43:44,820] [main] user.language = en [testng] [2024-11-19 00:43:44,820] [main] user.country = ${user.country} [testng] [2024-11-19 00:43:44,820] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-19 00:44:00,279] [main] ---------------------------------------- [testng] [2024-11-19 00:44:00,280] [main] Total files: 259 [testng] [2024-11-19 00:44:00,280] [main] Scan time: 15.459 s (59 ms/file) [testng] [2024-11-19 00:44:00,280] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-19 00:50:03,589] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] 00:50:03,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:50:03,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:03,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-19_00-50-03.log] [testng] 00:50:03,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a927bf3 - End of configuration. [testng] [2024-11-19 00:50:03,832] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib: [testng] 00:50:03,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:50:03,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:03,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-19_00-50-03.log] [testng] 00:50:03,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c5073d - End of configuration. [testng] [2024-11-19 00:50:04,076] [pool-1-thread-11] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 00:50:04,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:50:04,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:04,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-19_00-50-04.log] [testng] 00:50:04,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@221e2cf - End of configuration. [testng] [2024-11-19 00:50:04,491] [pool-1-thread-10] Initializing /data/marc/V0606J.oib: [testng] 00:50:04,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:50:04,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:04,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-19_00-50-04.log] [testng] 00:50:04,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77a793b2 - End of configuration. [testng] [2024-11-19 00:50:06,073] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] 00:50:06,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:50:06,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:06,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-19_00-50-06.log] [testng] 00:50:06,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@231bf243 - End of configuration. [testng] [2024-11-19 00:50:06,100] [pool-1-thread-8] Initializing /data/karl/Image0009.oib: [testng] 00:50:06,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:50:06,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:06,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-19_00-50-06.log] [testng] 00:50:06,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@442eaed1 - End of configuration. [testng] [2024-11-19 00:50:06,243] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] 00:50:06,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:50:06,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:06,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-19_00-50-06.log] [testng] 00:50:06,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@603c4e6d - End of configuration. [testng] [2024-11-19 00:50:06,633] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] 00:50:06,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:50:06,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:06,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-19_00-50-06.log] [testng] 00:50:06,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@690b4f85 - End of configuration. [testng] [2024-11-19 00:50:07,009] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF: [testng] 00:50:07,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:50:07,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:07,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-19_00-50-07.log] [testng] 00:50:07,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5151e102 - End of configuration. [testng] [2024-11-19 00:50:10,746] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] 00:50:10,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:50:10,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:10,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-19_00-50-10.log] [testng] 00:50:10,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ba7d155 - End of configuration. [testng] [2024-11-19 00:50:10,877] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] 00:50:10,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:50:10,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:10,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-19_00-50-10.log] [testng] 00:50:10,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@557de69f - End of configuration. [testng] [2024-11-19 00:50:11,061] [pool-1-thread-2] Initializing /data/brian/Lambda10nm.oib: [testng] 00:50:11,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:50:11,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:11,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-19_00-50-11.log] [testng] 00:50:11,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d00ac51 - End of configuration. [testng] [2024-11-19 00:50:13,676] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-19 00:50:13,890] [pool-1-thread-8] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-19 00:50:17,132] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] [2024-11-19 00:50:17,879] [pool-1-thread-1] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-19 00:50:18,213] [pool-1-thread-12] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-19 00:50:18,581] [pool-1-thread-3] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-19 00:50:19,839] [pool-1-thread-7] Initializing /data/glen/simulstack.oib: [testng] [2024-11-19 00:50:20,179] [pool-1-thread-6] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-19 00:50:21,278] [pool-1-thread-11] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-19 00:50:22,106] [pool-1-thread-3] Initializing /data/david/Image0016.oif: [testng] [2024-11-19 00:50:22,862] [pool-1-thread-9] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-19 00:50:25,846] [pool-1-thread-1] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-19 00:50:27,777] [pool-1-thread-12] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-19 00:50:29,075] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-19 00:50:29,500] [pool-1-thread-11] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-19 00:50:29,831] [pool-1-thread-4] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-19 00:50:30,345] [pool-1-thread-6] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-19 00:50:31,465] [pool-1-thread-10] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-19 00:50:33,267] [pool-1-thread-7] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-19 00:50:33,323] [pool-1-thread-4] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-19 00:50:33,991] [pool-1-thread-11] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-19 00:50:42,669] [pool-1-thread-12] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-19 00:50:55,544] [pool-1-thread-7] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-19 00:50:56,407] [pool-1-thread-6] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-19 00:50:57,536] [pool-1-thread-10] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-19 00:50:59,995] [pool-1-thread-1] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-19 00:51:01,641] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-19 00:51:04,676] [pool-1-thread-6] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-19 00:51:37,561] [pool-1-thread-10] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-19 00:51:46,004] [pool-1-thread-3] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-19 00:52:45,964] [pool-1-thread-7] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-19 00:52:48,316] [pool-1-thread-4] Initializing /data/allan/62909#1.oib: [testng] [2024-11-19 00:52:50,923] [pool-1-thread-1] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-19 00:52:53,627] [pool-1-thread-4] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-19 00:53:03,453] [pool-1-thread-7] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-19 00:53:06,732] [pool-1-thread-7] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-19 00:54:22,592] [pool-1-thread-3] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-19 00:54:26,153] [pool-1-thread-3] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-19 00:55:10,726] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-19 00:55:17,958] [pool-1-thread-3] Initializing /data/jae/Image0001.oib: [testng] [2024-11-19 00:55:24,835] [pool-1-thread-3] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-19 00:56:05,706] [pool-1-thread-3] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-19 00:56:12,933] [pool-1-thread-3] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-19 00:57:06,941] [pool-1-thread-3] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-19 00:57:12,786] [pool-1-thread-3] Initializing /data/michael/CELL3.oib: [testng] [2024-11-19 00:57:17,420] [pool-1-thread-3] Initializing /data/simon/never_worked.oib: [testng] [2024-11-19 00:57:23,053] [pool-1-thread-3] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-19 00:57:51,533] [pool-1-thread-3] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-19 00:57:56,993] [pool-1-thread-3] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-19 00:58:02,298] [pool-1-thread-3] Initializing /data/johannes/step1.bmp: [testng] [2024-11-19 00:58:04,859] [pool-1-thread-3] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-19 00:58:10,551] [pool-1-thread-3] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-19 00:58:15,436] [pool-1-thread-3] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-19 00:58:35,613] [pool-1-thread-3] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-19 00:58:41,104] [pool-1-thread-3] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-19 01:00:49,323] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] [2024-11-19 01:03:52,896] [pool-1-thread-8] Initializing /data/brian/FLIP.oib: [testng] [2024-11-19 01:03:58,809] [pool-1-thread-8] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-19 01:04:06,757] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-19 01:04:10,707] [pool-1-thread-8] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-19 01:04:14,051] [pool-1-thread-1] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-19 01:04:15,737] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-19 01:04:20,869] [pool-1-thread-8] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-19 01:04:39,519] [pool-1-thread-1] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-19 01:04:43,412] [pool-1-thread-1] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-19 01:04:47,413] [pool-1-thread-1] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-19 01:06:02,360] [pool-1-thread-10] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-19 01:06:05,854] [pool-1-thread-3] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-19 01:06:11,519] [pool-1-thread-10] Initializing /data/christian/20min.oif: [testng] [2024-11-19 01:06:29,862] [pool-1-thread-10] Initializing /data/marc/V0606L.oib: [testng] [2024-11-19 01:06:41,707] [pool-1-thread-3] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-19 01:06:48,234] [pool-1-thread-10] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-19 01:07:09,138] [pool-1-thread-10] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-19 01:07:10,774] [pool-1-thread-10] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-19 01:07:13,362] [pool-1-thread-10] Initializing /data/aryeh/1h.oib: [testng] [2024-11-19 01:07:20,519] [pool-1-thread-10] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-19 01:07:25,181] [pool-1-thread-10] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-19 01:07:36,884] [pool-1-thread-9] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-19 01:07:37,878] [pool-1-thread-9] Initializing /data/david/Image0016.oib: [testng] [2024-11-19 01:07:40,740] [pool-1-thread-9] Initializing /data/monica/Image0056.oif: [testng] [2024-11-19 01:07:42,020] [pool-1-thread-4] Initializing /data/glen/Image0002.oif: [testng] [2024-11-19 01:08:07,681] [pool-1-thread-9] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-19 01:08:12,101] [pool-1-thread-9] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-19 01:08:16,622] [pool-1-thread-9] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-19 01:08:44,703] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-19 01:08:49,092] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-19 01:08:54,519] [pool-1-thread-9] Initializing /data/johannes/step3.bmp: [testng] [2024-11-19 01:08:56,451] [pool-1-thread-9] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-19 01:10:41,879] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-19 01:10:46,393] [pool-1-thread-11] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-19 01:10:52,685] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-19 01:10:55,912] [pool-1-thread-2] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-19 01:10:58,871] [pool-1-thread-11] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-19 01:11:01,013] [pool-1-thread-2] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-19 01:11:10,191] [pool-1-thread-11] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-19 01:11:46,190] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-19 01:11:54,002] [pool-1-thread-9] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-19 01:13:00,270] [pool-1-thread-3] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-19 01:13:05,692] [pool-1-thread-3] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-19 01:13:09,967] [pool-1-thread-3] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-19 01:13:15,600] [pool-1-thread-3] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-19 01:13:21,708] [pool-1-thread-3] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-19 01:18:03,961] [pool-1-thread-10] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-19 01:19:42,555] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-19 01:19:51,819] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-19 01:20:00,664] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-19 01:20:09,424] [pool-1-thread-5] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-19 01:20:23,251] [pool-1-thread-5] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-19 01:20:32,450] [pool-1-thread-5] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-19 01:20:42,592] [pool-1-thread-5] Initializing /data/sten/01.oib: [testng] [2024-11-19 01:20:50,456] [pool-1-thread-5] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-19 01:20:59,103] [pool-1-thread-5] Initializing /data/johannes/step2.bmp: [testng] [2024-11-19 01:21:02,947] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-19 01:24:43,790] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-19 01:24:51,817] [pool-1-thread-12] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-19 01:24:58,652] [pool-1-thread-12] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-11-19 01:25:37,173] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-19 01:25:42,343] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-19 01:25:48,616] [pool-1-thread-12] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-19 01:25:53,118] [pool-1-thread-12] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-19 01:25:57,824] [pool-1-thread-12] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-19 01:26:01,487] [pool-1-thread-8] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-19 01:26:03,457] [pool-1-thread-12] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-19 01:26:31,055] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-19 01:26:37,908] [pool-1-thread-4] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-19 01:26:58,508] [pool-1-thread-8] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-19 01:26:59,361] [pool-1-thread-12] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-19 01:27:06,307] [pool-1-thread-8] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-19 01:27:10,288] [pool-1-thread-12] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-19 01:27:15,926] [pool-1-thread-12] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-19 01:27:17,520] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-19 01:27:23,608] [pool-1-thread-12] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 01:53:55,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:53:55,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:55,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-19_01-53-55.log] [testng] 01:53:55,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30e7fbb0 - End of configuration. [testng] 02:37:53,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:37:53,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:53,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-19_02-37-53.log] [testng] 02:37:53,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f116270 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 114 minutes 12 seconds Finished: SUCCESS