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Started by upstream project "BIOFORMATS-test-repo" build number 31 originally caused by: Started by upstream project "Trigger" build number 35 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1991556235099522926.sh + '[' fei = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4100_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:14:47,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:14:47,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:14:47,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:14:47,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:14:47,420 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:14:47,421 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:14:47,421 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:14:47,421 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:14:47,421 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 07:14:47,422 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 07:14:47,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 416 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-12 07:14:47,432] [main] java.version = 1.8.0_342 [testng] 07:14:47,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:14:47,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:47,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_07-14-47.log] [testng] 07:14:47,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-12 07:14:47,492] [main] testng.directory = /data [testng] [2024-04-12 07:14:47,492] [main] testng.configDirectory = /config [testng] [2024-04-12 07:14:47,506] [main] testng.multiplier = 1.0 [testng] [2024-04-12 07:14:47,506] [main] testng.in-memory = false [testng] [2024-04-12 07:14:47,507] [main] testng.allow-missing = false [testng] [2024-04-12 07:14:47,507] [main] user.language = en [testng] [2024-04-12 07:14:47,507] [main] user.country = ${user.country} [testng] [2024-04-12 07:14:47,507] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-12 07:14:49,154] [main] ---------------------------------------- [testng] [2024-04-12 07:14:49,155] [main] Total files: 21 [testng] [2024-04-12 07:14:49,155] [main] Scan time: 1.647 s (78 ms/file) [testng] [2024-04-12 07:14:49,155] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-12 07:14:51,793] [pool-1-thread-1] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] 07:14:51,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:14:51,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:51,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_07-14-51.log] [testng] 07:14:51,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cd758ea - End of configuration. [testng] [2024-04-12 07:14:51,861] [pool-1-thread-12] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] 07:14:51,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:14:51,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:51,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_07-14-51.log] [testng] 07:14:51,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7898ce18 - End of configuration. [testng] [2024-04-12 07:14:51,923] [pool-1-thread-11] Initializing /data/venu/VENU.TIF: [testng] 07:14:51,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:14:51,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:51,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_07-14-51.log] [testng] 07:14:51,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33676ff2 - End of configuration. [testng] [2024-04-12 07:14:51,956] [pool-1-thread-10] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] 07:14:51,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:14:51,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:51,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_07-14-51.log] [testng] 07:14:51,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5447b196 - End of configuration. [testng] [2024-04-12 07:14:51,985] [pool-1-thread-9] Initializing /data/venu/VENU03.IMG: [testng] 07:14:51,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:14:51,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:51,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_07-14-51.log] [testng] 07:14:51,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa04bca - End of configuration. [testng] [2024-04-12 07:14:52,001] [pool-1-thread-8] Initializing /data/steffen/Batman_008.tif: [testng] 07:14:52,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:14:52,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:52,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_07-14-52.log] [testng] 07:14:52,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e69e37b - End of configuration. [testng] [2024-04-12 07:14:52,036] [pool-1-thread-7] Initializing /data/venu/VENU_Five.TIF: [testng] 07:14:52,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:14:52,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:52,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_07-14-52.log] [testng] 07:14:52,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63aa2ee0 - End of configuration. [testng] [2024-04-12 07:14:52,070] [pool-1-thread-6] Initializing /data/venu/VENU_Four.TIF: [testng] 07:14:52,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:14:52,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:52,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_07-14-52.log] [testng] 07:14:52,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@705ed2c6 - End of configuration. [testng] [2024-04-12 07:14:52,152] [pool-1-thread-5] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 07:14:52,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:14:52,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:52,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_07-14-52.log] [testng] 07:14:52,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be9db1d - End of configuration. [testng] [2024-04-12 07:14:52,198] [pool-1-thread-4] Initializing /data/venu/VENU_Six.TIF: [testng] 07:14:52,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:14:52,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:52,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_07-14-52.log] [testng] 07:14:52,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18851297 - End of configuration. [testng] [2024-04-12 07:14:52,229] [pool-1-thread-3] Initializing /data/venu/VENU_Eight.TIF: [testng] 07:14:52,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:14:52,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:52,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_07-14-52.log] [testng] 07:14:52,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7961b322 - End of configuration. [testng] [2024-04-12 07:14:52,263] [pool-1-thread-2] Initializing /data/venu/VENU03.TIF: [testng] 07:14:52,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:14:52,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:52,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_07-14-52.log] [testng] 07:14:52,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b33b21 - End of configuration. [testng] [2024-04-12 07:14:54,501] [pool-1-thread-10] Initializing /data/venu/VENU_Seven.TIF: [testng] [2024-04-12 07:14:54,534] [pool-1-thread-3] Initializing /data/venu/VENU01.TIF: [testng] [2024-04-12 07:14:54,578] [pool-1-thread-6] Initializing /data/venu/VENU01.IMG: [testng] [2024-04-12 07:14:54,593] [pool-1-thread-5] Initializing /data/venu/VENU02.TIF: [testng] [2024-04-12 07:14:54,647] [pool-1-thread-9] Initializing /data/venu/VENU02.IMG: [testng] [2024-04-12 07:14:54,661] [pool-1-thread-2] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 seconds Finished: SUCCESS