Started by upstream project "BIOFORMATS-test-repo" build number 261 originally caused by: Started by upstream project "Trigger" build number 285 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins6755614623343637810.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41131_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:21:36,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:36,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:21:36,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:36,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:36,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:36,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:36,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:36,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:36,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:36,636 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:36,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:36,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:36,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:36,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:36,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:36,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:36,835 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:36,836 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:36,836 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:36,836 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:36,836 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:21:36,837 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:21:36,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-20 00:21:36,846] [main] java.version = 17.0.2 [testng] 00:21:36,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:36,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:36,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-20_00-21-36.log] [testng] 00:21:36,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-20 00:21:36,894] [main] testng.directory = /data [testng] [2024-11-20 00:21:36,894] [main] testng.configDirectory = /config [testng] [2024-11-20 00:21:36,902] [main] testng.multiplier = 1.0 [testng] [2024-11-20 00:21:36,903] [main] testng.in-memory = false [testng] [2024-11-20 00:21:36,903] [main] testng.allow-missing = false [testng] [2024-11-20 00:21:36,903] [main] user.language = en [testng] [2024-11-20 00:21:36,903] [main] user.country = ${user.country} [testng] [2024-11-20 00:21:36,903] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-20 00:21:56,887] [main] ---------------------------------------- [testng] [2024-11-20 00:21:56,887] [main] Total files: 315 [testng] [2024-11-20 00:21:56,887] [main] Scan time: 19.984 s (63 ms/file) [testng] [2024-11-20 00:21:56,887] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-20 00:34:45,308] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] 00:34:45,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:34:45,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:45,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-20_00-34-45.log] [testng] 00:34:45,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f774a49 - End of configuration. [testng] [2024-11-20 00:34:45,729] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] 00:34:45,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:34:45,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:45,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-20_00-34-45.log] [testng] 00:34:45,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61df14ff - End of configuration. [testng] [2024-11-20 00:34:46,347] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.oir: [testng] 00:34:46,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:34:46,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:46,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-20_00-34-46.log] [testng] 00:34:46,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55479d70 - End of configuration. [testng] [2024-11-20 00:34:47,099] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] 00:34:47,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:34:47,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:47,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-20_00-34-47.log] [testng] 00:34:47,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@363b93d - End of configuration. [testng] [2024-11-20 00:34:47,947] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] 00:34:47,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:34:47,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:47,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-20_00-34-47.log] [testng] 00:34:47,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5db63935 - End of configuration. [testng] [2024-11-20 00:34:50,121] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] 00:34:50,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:34:50,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:50,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-20_00-34-50.log] [testng] 00:34:50,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff05873 - End of configuration. [testng] [2024-11-20 00:34:51,336] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] 00:34:51,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:34:51,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:51,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-20_00-34-51.log] [testng] 00:34:51,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70ffce53 - End of configuration. [testng] [2024-11-20 00:34:51,893] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] 00:34:51,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:34:51,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:51,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-20_00-34-51.log] [testng] 00:34:51,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5331b506 - End of configuration. [testng] [2024-11-20 00:34:52,620] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] 00:34:52,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:34:52,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:52,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-20_00-34-52.log] [testng] 00:34:52,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cff0c00 - End of configuration. [testng] [2024-11-20 00:34:53,375] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] 00:34:53,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:34:53,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:53,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-20_00-34-53.log] [testng] 00:34:53,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d7ca38c - End of configuration. [testng] [2024-11-20 00:34:54,408] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] 00:34:54,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:34:54,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:54,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-20_00-34-54.log] [testng] 00:34:54,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7db61a70 - End of configuration. [testng] [2024-11-20 00:34:55,177] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir: [testng] 00:34:55,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:34:55,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:55,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-20_00-34-55.log] [testng] 00:34:55,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@627dde3e - End of configuration. [testng] [2024-11-20 00:35:24,489] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-11-20 00:35:25,091] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-11-20 00:35:26,237] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-11-20 00:35:27,220] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-11-20 00:35:28,006] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-11-20 00:35:28,690] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-11-20 00:35:29,487] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-11-20 00:35:30,672] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-11-20 00:35:31,711] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-11-20 00:35:37,742] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-11-20 00:35:38,601] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-11-20 00:35:40,197] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-11-20 00:35:41,105] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-11-20 00:35:41,689] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-11-20 00:35:43,122] [pool-1-thread-11] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-11-20 00:35:45,719] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-11-20 00:35:46,463] [pool-1-thread-8] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-11-20 00:35:47,211] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-11-20 00:35:47,685] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-11-20 00:35:48,241] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-11-20 00:35:51,783] [pool-1-thread-7] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-11-20 00:35:53,601] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-11-20 00:35:54,190] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-11-20 00:35:56,177] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-11-20 00:35:57,076] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-11-20 00:35:57,682] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-11-20 00:35:59,100] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-11-20 00:36:00,772] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-11-20 00:36:04,148] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-11-20 00:36:05,043] [pool-1-thread-6] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-11-20 00:36:06,695] [pool-1-thread-4] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-11-20 00:36:07,382] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-11-20 00:36:08,987] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-11-20 00:36:10,255] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-11-20 00:36:11,090] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-11-20 00:36:13,007] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-11-20 00:36:13,597] [pool-1-thread-5] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-11-20 00:36:16,959] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-11-20 00:36:18,293] [pool-1-thread-7] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-11-20 00:36:20,095] [pool-1-thread-6] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-11-20 00:36:21,520] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-11-20 00:36:22,854] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-11-20 00:36:25,239] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-11-20 00:36:25,918] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-11-20 00:36:28,147] [pool-1-thread-5] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-11-20 00:36:31,971] [pool-1-thread-7] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-11-20 00:36:32,646] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-11-20 00:36:33,486] [pool-1-thread-8] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-11-20 00:36:34,566] [pool-1-thread-6] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-11-20 00:36:36,260] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-11-20 00:36:37,628] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-11-20 00:36:39,111] [pool-1-thread-4] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-11-20 00:36:39,834] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-11-20 00:36:40,412] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-11-20 00:36:43,921] [pool-1-thread-7] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-11-20 00:36:44,708] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-11-20 00:36:45,974] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-11-20 00:36:46,517] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-11-20 00:36:48,209] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-11-20 00:36:50,002] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-11-20 00:36:52,375] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-11-20 00:36:52,964] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-11-20 00:36:53,575] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-11-20 00:36:55,365] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-11-20 00:36:59,111] [pool-1-thread-10] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-11-20 00:36:59,322] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-11-20 00:37:00,720] [pool-1-thread-1] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-11-20 00:37:01,968] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-11-20 00:37:03,242] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-11-20 00:37:04,683] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-11-20 00:37:05,457] [pool-1-thread-3] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-11-20 00:37:06,275] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-11-20 00:37:07,531] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-11-20 00:37:08,357] [pool-1-thread-10] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-11-20 00:37:11,226] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-11-20 00:37:13,340] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-11-20 00:37:14,373] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-11-20 00:37:15,240] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-11-20 00:37:17,181] [pool-1-thread-10] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-11-20 00:37:18,128] [pool-1-thread-4] Initializing /data/olympus/XYZt.vsi: [testng] [2024-11-20 00:37:18,640] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-11-20 00:37:20,546] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-11-20 00:37:26,877] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-11-20 00:37:27,668] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-11-20 00:37:28,453] [pool-1-thread-9] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-11-20 00:37:29,042] [pool-1-thread-5] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-11-20 00:37:31,100] [pool-1-thread-12] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-11-20 00:37:32,654] [pool-1-thread-3] Initializing /data/qa-17270/image1.oir: [testng] [2024-11-20 00:37:34,798] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-11-20 00:37:37,193] [pool-1-thread-1] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-11-20 00:37:38,326] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-11-20 00:37:43,151] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-11-20 00:37:48,849] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-11-20 00:37:50,535] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-11-20 00:37:51,615] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-11-20 00:37:57,232] [pool-1-thread-12] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-11-20 00:37:59,323] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-11-20 00:38:00,064] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-11-20 00:38:01,497] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-11-20 00:38:05,577] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-11-20 00:38:10,632] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-11-20 00:38:11,428] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-11-20 00:38:12,238] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-11-20 00:38:12,833] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-11-20 00:38:13,523] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-11-20 00:38:14,323] [pool-1-thread-4] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-11-20 00:39:04,934] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-11-20 00:39:08,600] [pool-1-thread-9] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-11-20 00:39:09,060] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-11-20 00:39:09,901] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-11-20 00:39:11,730] [pool-1-thread-12] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-11-20 00:39:15,771] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-11-20 00:39:16,675] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-11-20 00:39:21,362] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-11-20 00:39:22,458] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-11-20 00:39:23,546] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-11-20 00:39:24,243] [pool-1-thread-6] Initializing /data/qa-17919/f10187.oir: [testng] [2024-11-20 00:39:44,924] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-11-20 00:39:47,667] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-20 00:39:48,784] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-11-20 00:39:49,815] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-11-20 00:39:51,389] [pool-1-thread-10] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-11-20 00:39:55,794] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-11-20 00:39:57,576] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-11-20 00:40:01,119] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-11-20 00:40:02,937] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-11-20 00:40:04,595] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-11-20 00:40:05,126] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-11-20 00:40:08,010] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-11-20 00:40:09,453] [pool-1-thread-1] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-11-20 00:40:10,015] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-11-20 00:40:11,917] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-20 00:40:13,837] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-11-20 00:40:15,344] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-11-20 00:40:16,344] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-11-20 00:40:20,086] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-11-20 00:40:20,644] [pool-1-thread-11] Initializing /data/qa-17270/stack1.oir: [testng] [2024-11-20 00:40:23,706] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-11-20 00:40:25,911] [pool-1-thread-3] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-11-20 00:40:26,568] [pool-1-thread-10] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-11-20 00:40:28,662] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-11-20 00:40:32,333] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-11-20 00:40:32,817] [pool-1-thread-3] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-11-20 00:40:33,804] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-11-20 00:40:34,155] [pool-1-thread-10] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-11-20 00:40:35,633] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-11-20 00:40:38,032] [pool-1-thread-7] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-11-20 00:40:43,738] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-11-20 00:40:45,806] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-11-20 00:40:46,626] [pool-1-thread-10] Initializing /data/olympus/XYZt.oir: [testng] [2024-11-20 00:40:48,250] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-11-20 00:40:48,762] [pool-1-thread-11] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-11-20 00:40:49,256] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-11-20 00:40:54,163] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-11-20 00:40:54,753] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-11-20 00:40:58,828] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-11-20 00:41:01,666] [pool-1-thread-2] Initializing /data/qa-17917/f10010.oir: [testng] [2024-11-20 00:41:29,065] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-11-20 00:41:33,756] [pool-1-thread-12] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-11-20 00:41:36,350] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-11-20 00:41:39,995] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-11-20 00:41:45,486] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-11-20 00:41:50,651] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-11-20 00:41:53,001] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-11-20 00:41:57,895] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-11-20 00:41:59,244] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-11-20 00:42:03,005] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-11-20 00:42:07,741] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-11-20 00:42:10,945] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-11-20 00:42:12,568] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-11-20 00:42:21,925] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-11-20 00:42:23,726] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-11-20 00:42:24,807] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-11-20 00:42:30,164] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-11-20 00:42:34,485] [pool-1-thread-11] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-11-20 00:42:36,443] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-11-20 00:42:41,461] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-11-20 00:42:50,618] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-11-20 00:42:55,010] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-11-20 00:42:57,411] [pool-1-thread-11] Initializing /data/qa-17335/1.oir: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 51 minutes 54 seconds Finished: SUCCESS